IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2410	 50.26	0	2668453..2669403	+	316	170082073	talA	ECDH10B_2629	-	transaldolase A
2411	 54.64	0	2669423..2671426	+	667	170082074	tktB	ECDH10B_2630	-	transketolase 2, thiamin-binding
2412	 54.60	0	2671521..2672564	-	347	170082075	ypfG	ECDH10B_2631	-	hypothetical protein
2413	 48.61	0	2672690..2673265	-	191	170082076	yffH	ECDH10B_2632	-	NUDIX hydrolase
2414	 55.71	0	2673333..2675312	-	659	170082077	aegA	ECDH10B_2633	-	fused oxidoreductase: FeS binding subunit; NAD/FAD-binding subunit
2415	 51.62	0	2675518..2677218	+	566	170082078	narQ	ECDH10B_2634	-	sensory histidine kinase in two-component regulatory system with NarP (NarL)
2416	 54.46	0	2677382..2680495	+	1037	170082079	acrD	ECDH10B_2635	-	aminoglycoside/multidrug efflux system
2417	 46.78	0	2681034..2681390	+	118	170082080	yffB	ECDH10B_2636	-	hypothetical protein
2418	 53.46	0	2681394..2682521	+	375	170082081	dapE	ECDH10B_2637	-	N-succinyl-diaminopimelate deacylase
2419	 48.26	0	2682549..2682749	+	66	170082082	ypfN	ECDH10B_2638	-	hypothetical protein
2420	 53.93	0	2682859..2683557	-	232	170082083	ypfH	ECDH10B_2639	-	hydrolase
2421	 55.26	0	2683631..2685646	-	671	170082084	ypfI	ECDH10B_2640	-	hydrolase
2422	 53.59	0	2685661..2686524	-	287	170082085	ypfJ	ECDH10B_2641	-	hypothetical protein
2423	 52.24	0	2686692..2687405	-	237	170082086	purC	ECDH10B_2642	-	phosphoribosylaminoimidazole-succinocarboxamide synthetase
2424	 55.46	0	2687618..2688652	-	344	170082087	nlpB	ECDH10B_2643	-	lipoprotein
2425	 51.76	0	2688669..2689547	-	292	170082088	dapA	ECDH10B_2644	-	dihydrodipicolinate synthase
2426	 50.09	0	2689693..2690265	+	190	170082089	gcvR	ECDH10B_2645	-	DNA-binding transcriptional repressor, regulatory protein accessory to GcvA
2427	 49.47	0	2690265..2690735	+	156	170082090	bcp	ECDH10B_2646	-	thiol peroxidase, thioredoxin-dependent
2428	 56.31	+1	2690988..2691605	+	205	170082091	hyfA	ECDH10B_2647	-	hydrogenase 4, 4Fe-4S subunit
2429	 54.73	0	2691605..2693623	+	672	170082092	hyfB	ECDH10B_2648	-	hydrogenase 4, membrane subunit
2430	 53.69	0	2693634..2694581	+	315	170082093	hyfC	ECDH10B_2649	-	hydrogenase 4, membrane subunit
2431	 55.35	0	2694598..2696037	+	479	170082094	hyfD	ECDH10B_2650	-	hydrogenase 4, membrane subunit
2432	 53.30	0	2696049..2696699	+	216	170082095	hyfE	ECDH10B_2651	-	hydrogenase 4, membrane subunit
2433	 53.89	0	2696704..2698284	+	526	170082096	hyfF	ECDH10B_2652	-	hydrogenase 4, membrane subunit
2434	 54.32	0	2698274..2699941	+	555	170082097	hyfG	ECDH10B_2653	-	hydrogenase 4, subunit
2435	 54.95	0	2699951..2700496	+	181	170082098	hyfH	ECDH10B_2654	-	hydrogenase 4, Fe-S subunit
2436	 55.73	0	2700493..2701251	+	252	170082099	hyfI	ECDH10B_2655	-	hydrogenase 4, Fe-S subunit
2437	 52.66	0	2701244..2701657	+	137	170082100	hyfJ	ECDH10B_2656	-	processing element hydrogenase 4
2438	 52.61	0	2701687..2703699	+	670	170082101	hyfR	ECDH10B_2657	-	DNA-binding transcriptional activator, formate sensing
2439	 51.24	0	2703721..2704569	+	282	170082102	focB	ECDH10B_2658	-	formate transporter
2440	 54.14	0	2704607..2705668	-	353	170082103	yfgO	ECDH10B_2659	-	inner membrane protein
2441	 53.89	0	2705881..2707344	+	487	170082104	yfgC	ECDH10B_2660	-	peptidase
2442	 52.50	0	2707365..2707724	+	119	170082105	yfgD	ECDH10B_2661	-	oxidoreductase
2443	 53.15	0	2707862..2708608	-	248	170082106	hda	ECDH10B_2662	-	ATPase regulatory factor involved in DnaA inactivation
2444	 51.94	0	2708658..2709947	-	429	170082107	uraA	ECDH10B_2663	-	uracil transporter
2445	 52.95	0	2710033..2710659	-	208	170082108	upp	ECDH10B_2664	-	uracil phosphoribosyltransferase
2446	 52.89	0	2710984..2712021	+	345	170082109	purM	ECDH10B_2665	-	phosphoribosylaminoimidazole synthetase
2447	 53.68	0	2712021..2712659	+	212	170082110	purN	ECDH10B_2666	-	phosphoribosylglycinamide formyltransferase 1
2448	 48.86	0	2712831..2714897	+	688	170082111	ppk	ECDH10B_2667	-	polyphosphate kinase, component of RNA degradosome
2449	 51.17	0	2714902..2716443	+	513	170082112	ppx	ECDH10B_2668	-	exopolyphosphatase
2450	 46.61	0	2716482..2718725	-	747	170082113	yfgF	ECDH10B_2669	-	inner membrane protein
2451	 49.48	0	2719077..2719268	+	63	170082114	yfgG	ECDH10B_2670	-	hypothetical protein
2452	 47.21	0	2719579..2720097	+	172	170082115	yfgH	ECDH10B_2671	-	outer membrane lipoprotein
2453	 49.26	0	2720113..2720652	+	179	170082116	yfgI	ECDH10B_2672	-	hypothetical protein
2454	 54.12	0	2720745..2722322	-	525	170082117	guaA	ECDH10B_2673	-	GMP synthetase (glutamine aminotransferase)
2455	 54.67	0	2722391..2723857	-	488	170082118	guaB	ECDH10B_2674	-	IMP dehydrogenase
2456	 53.25	0	2724019..2725389	+	456	170082119	xseA	ECDH10B_2675	-	exonuclease VII, large subunit
2457	 47.69	0	2725386..2725601	-	71	170082120	yfgJ	ECDH10B_2676	-	hypothetical protein
2458	 52.21	0	2725671..2727143	-	490	170082121	der	ECDH10B_2677	-	GTP-binding protein
2459	 53.27	0	2727261..2728439	-	392	170082122	yfgL	ECDH10B_2678	-	protein assembly complex, lipoprotein component
2460	 49.76	0	2728450..2729070	-	206	170082123	yfgM	ECDH10B_2679	-	hypothetical protein
2461	 54.75	0	2729088..2730362	-	424	170082124	hisS	ECDH10B_2680	-	histidyl tRNA synthetase
2462	 53.26	0	2730473..2731591	-	372	170082125	ispG	ECDH10B_2681	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
2463	 54.54	0	2731618..2732631	-	337	170082126	yfgA	ECDH10B_2682	-	hypothetical protein
2464	 52.99	0	2732916..2734070	-	384	170082127	yfgB	ECDH10B_2683	-	hypothetical protein
2465	 52.31	0	2734220..2734651	-	143	170082128	ndk	ECDH10B_2684	-	multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase
2466	 56.72	+1	2734800..2737112	-	770	170082129	pbpC	ECDH10B_2685	-	fused transglycosylase; transpeptidase
2467	 52.96	0	2737113..2742074	-	1653	170082130	yfhM	ECDH10B_2686	-	hypothetical protein
2468	 53.19	0	2742281..2743126	+	281	170082131	sseA	ECDH10B_2687	-	3-mercaptopyruvate sulfurtransferase
2469	 47.10	0	2743944..2744720	-	258	170082132	sseB	ECDH10B_2689	-	rhodanase-like enzyme, sulfur transfer from thiosulfate
2470	 56.85	+1	2744862..2746145	-	427	170082133	pepB	ECDH10B_2690	-	aminopeptidase B
2471	 50.25	0	2746323..2746523	-	66	170082134	yfhJ	ECDH10B_2691	-	hypothetical protein
2472	 51.79	0	2746535..2746870	-	111	170082135	fdx	ECDH10B_2692	-	[2Fe-2S] ferredoxin
2473	 57.70	+1	2746872..2748722	-	616	170082136	hscA	ECDH10B_2693	-	DnaK-like molecular chaperone specific for IscU
2474	 52.33	0	2748739..2749254	-	171	170082137	hscB	ECDH10B_2694	-	DnaJ-like molecular chaperone specific for IscU
2475	 51.54	0	2749350..2749673	-	107	170082138	iscA	ECDH10B_2695	-	FeS cluster assembly protein
2476	 50.13	0	2749690..2750076	-	128	170082139	iscU	ECDH10B_2696	-	scaffold protein
2477	 53.33	0	2750104..2751318	-	404	170082140	iscS	ECDH10B_2697	-	cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent
2478	 53.58	0	2751430..2751918	-	162	170082141	iscR	ECDH10B_2698	-	Fe-S cluster-containing transcription factor
2479	 55.47	0	2752370..2753110	-	246	170082142	yfhQ	ECDH10B_2699	-	methyltransferase
2480	 54.48	0	2753229..2754032	+	267	170082143	suhB	ECDH10B_2700	-	inositol monophosphatase
2481	 50.11	0	2754150..2755031	+	293	170082144	yfhR	ECDH10B_2701	-	peptidase
2482	 51.52	0	2755222..2756502	+	426	170082145	csiE	ECDH10B_2702	-	stationary phase inducible protein
2483	 56.49	+1	2756494..2757633	-	379	170082146	hcaT	ECDH10B_2703	-	3-phenylpropionic transporter
2484	 49.83	0	2757793..2758683	-	296	170082147	hcaR	ECDH10B_2704	-	DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism
2485	 52.94	0	2758819..2760180	+	453	170082148	hcaE	ECDH10B_2705	-	3-phenylpropionate dioxygenase, large (alpha) subunit
2486	 52.22	0	2760177..2760695	+	172	170082149	hcaF	ECDH10B_2706	-	3-phenylpropionate dioxygenase, small (beta) subunit
2487	 55.45	0	2760695..2761015	+	106	170082150	hcaC	ECDH10B_2707	-	3-phenylpropionate dioxygenase ferredoxin subunit
2488	 56.09	+1	2761012..2761824	+	270	170082151	hcaB	ECDH10B_2708	-	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase
2489	 54.03	0	2761834..2763036	+	400	170082152	hcaD	ECDH10B_2709	-	phenylpropionate dioxygenase, ferredoxin reductase subunit
2490	 49.09	0	2763061..2763555	+	164	170082153	yphA	ECDH10B_2710	-	inner membrane protein
2491	 55.21	0	2763603..2764475	-	290	170082154	yphB	ECDH10B_2711	-	hypothetical protein
2492	 55.18	0	2764487..2765548	-	353	170082155	yphC	ECDH10B_2712	-	oxidoreductase, Zn-dependent and NAD(P)-binding
2493	 56.16	+1	2765614..2766612	-	332	170082156	yphD	ECDH10B_2713	-	sugar ABC transporter membrane protein
2494	 56.08	+1	2766637..2768148	-	503	170082157	yphE	ECDH10B_2714	-	sugar ABC transporter ATP-binding protein
2495	 46.14	-1	2768171..2769154	-	327	170082158	yphF	ECDH10B_2715	-	sugar ABC transporter periplasmic-binding protein
2496	 54.88	0	2769251..2772532	-	1093	170082159	yphG	ECDH10B_2716	-	hypothetical protein
2497	 50.59	0	2772650..2773843	+	397	170082160	yphH	ECDH10B_2717	-	DNA-binding transcriptional regulator
2498	 53.35	0	2774041..2775294	-	417	170082161	glyA	ECDH10B_2718	-	serine hydroxymethyltransferase
2499	 52.48	0	2775622..2776812	+	396	170082162	hmp	ECDH10B_2719	-	fused nitric oxide dioxygenase; dihydropteridine reductase 2
2500	 51.03	0	2776857..2777195	-	112	170082163	glnB	ECDH10B_2720	-	regulatory protein P-II for glutamine synthetase
2501	 54.76	0	2777256..2778590	-	444	170082164	yfhA	ECDH10B_2721	-	DNA-binding response regulator in two-component system
2502	 54.20	0	2778580..2779293	-	237	170082165	yfhG	ECDH10B_2722	-	hypothetical protein
2503	 53.15	0	2779458..2780885	-	475