IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2351	 48.05	0	2612516..2613772	-	418	170082014	xapB	ECDH10B_2570	-	xanthosine transporter
2352	 51.68	0	2613832..2614665	-	277	170082015	xapA	ECDH10B_2571	-	purine nucleoside phosphorylase II
2353	 45.23	-1	2614914..2615678	+	254	170082016	yfeN	ECDH10B_2572	-	outer membrane protein
2354	 53.94	0	2615717..2616643	-	308	170082017	yfeR	ECDH10B_2573	-	DNA-binding transcriptional regulator
2355	 51.75	0	2616733..2617731	+	332	170082018	yfeH	ECDH10B_2574	-	inner membrane protein
2356	 51.60	0	2617728..2617946	-	72	170082019	ypeB	ECDH10B_2575	-	hypothetical protein
2357	 54.41	0	2617948..2619963	-	671	170082020	ligA	ECDH10B_2576	-	DNA ligase, NAD(+)-dependent
2358	 55.12	0	2620034..2621020	-	328	170082021	zipA	ECDH10B_2577	-	cell division protein involved in Z ring assembly
2359	 50.13	0	2621250..2622011	+	253	170082022	cysZ	ECDH10B_2578	-	inner membrane protein
2360	 50.31	0	2622196..2623167	+	323	170082023	cysK	ECDH10B_2579	-	cysteine synthase A, O-acetylserine sulfhydrolase A subunit
2361	 50.78	0	2623551..2623808	+	85	170082024	ptsH	ECDH10B_2580	-	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)
2362	 49.65	0	2623853..2625580	+	575	170082025	ptsI	ECDH10B_2581	-	PEP-protein phosphotransferase of PTS system (enzyme I)
2363	 47.25	0	2625621..2626130	+	169	170082026	crr	ECDH10B_2582	-	glucose-specific enzyme IIA component of PTS
2364	 52.23	0	2626173..2627024	-	283	170082027	pdxK	ECDH10B_2583	-	pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase
2365	 46.40	0	2627129..2627503	+	124	170082028	yfeK	ECDH10B_2584	-	hypothetical protein
2366	 39.18	-2	2627536..2628270	+	244	170082029	yfeS	ECDH10B_2585	-	hypothetical protein
2367	 56.47	+1	2628459..2629370	-	303	170082030	cysM	ECDH10B_2586	-	cysteine synthase B (O-acetylserine sulfhydrolase B)
2368	 58.65	+1	2629504..2630601	-	365	170082031	cysA	ECDH10B_2587	-	sulfate/thiosulfate ABC transporter ATP-binding protein
2369	 56.62	+1	2630591..2631466	-	291	170082032	cysW	ECDH10B_2588	-	sulfate/thiosulfate ABC transporter membrane protein
2370	 56.24	+1	2631466..2632299	-	277	170082033	cysU	ECDH10B_2589	-	sulfate/thiosulfate ABC transporter membrane protein
2371	 53.79	0	2632299..2633315	-	338	170082034	cysP	ECDH10B_2590	-	thiosulfate ABC transporter periplasmic substrate-binding protein
2372	 55.30	0	2633619..2634410	-	263	170082035	ucpA	ECDH10B_2591	-	oxidoredutase, sulfate metabolism protein
2373	 51.63	0	2634539..2635396	-	285	170082036	yfeT	ECDH10B_2592	-	DNA-binding transcriptional regulator
2374	 53.51	0	2635560..2636456	+	298	170082037	yfeU	ECDH10B_2593	-	PTS component
2375	 56.56	+1	2636460..2637884	+	474	170082038	murP	ECDH10B_2594	-	fused PTS enzymes: IIB component; IIC component
2376	 51.88	0	2637889..2639193	+	434	170082039	yfeW	ECDH10B_2595	-	periplasmic esterase
2377	 56.00	+1	2639433..2640332	-	299	170082040	yfeX	ECDH10B_2596	-	hypothetical protein
2378	 50.87	0	2640428..2641003	-	191	170082041	yfeY	ECDH10B_2597	-	hypothetical protein
2379	 52.89	0	2641064..2641513	-	149	170082042	yfeZ	ECDH10B_2598	-	inner membrane protein
2380	 51.64	0	2641500..2641925	-	141	170082043	ypeA	ECDH10B_2599	-	acyltransferase
2381	 49.77	0	2642139..2643008	+	289	170082044	amiA	ECDH10B_2600	-	N-acetylmuramoyl-l-alanine amidase I
2382	 54.67	0	2643012..2643911	+	299	170082045	hemF	ECDH10B_2601	-	coproporphyrinogen III oxidase
2383	 53.37	0	2643917..2644969	-	350	170082046	yfeG	ECDH10B_2602	-	DNA-binding transcriptional regulator
2384	 58.08	+1	2645015..2645515	-	166	170082047	yffI	ECDH10B_2603	-	carboxysome structural protein with role in ethanolamine utilization
2385	 56.36	+1	2645528..2646187	-	219	170082048	eutL	ECDH10B_2604	-	carboxysome structural protein with role in ethanolamine utilization
2386	 56.64	+1	2646197..2647084	-	295	170082049	eutC	ECDH10B_2605	-	ethanolamine ammonia-lyase, small subunit (light chain)
2387	 55.65	0	2647105..2648466	-	453	170082050	eutB	ECDH10B_2606	-	ethanolamine ammonia-lyase, large subunit, heavy chain
2388	 53.47	0	2648558..2649853	+	431	170082051	intZ	ECDH10B_2607	-	CPZ-55 prophage; integrase
2389	 44.39	-1	2650044..2650685	+	213	170082052	yffL	ECDH10B_2608	-	CPZ-55 prophage; hypothetical protein
2390	 48.78	0	2651155..2651400	+	81	170082053	yffM	ECDH10B_2609	-	CPZ-55 prophage; hypothetical protein
2391	 46.61	0	2651397..2651780	+	127	170082054	yffN	ECDH10B_2610	-	CPZ-55 prophage; hypothetical protein
2392	 48.92	0	2651898..2652314	+	138	170082055	yffO	ECDH10B_2611	-	CPZ-55 prophage; hypothetical protein
2393	 52.36	0	2652311..2652904	+	197	170082056	yffP	ECDH10B_2612	-	CPZ-55 prophage; hypothetical protein
2394	 44.02	-1	2653364..2653756	+	130	170082057	yffQ	ECDH10B_2613	-	CPZ-55 prophage; hypothetical protein
2395	 44.02	-1	2653767..2654159	+	130	170082058	yffR	ECDH10B_2614	-	CPZ-55 prophage; hypothetical protein
2396	 49.88	0	2654280..2655119	+	279	170082059	yffS	ECDH10B_2615	-	CPZ-55 prophage; hypothetical protein
2397	 59.12	+1	2655268..2656671	-	467	170082060	eutA	ECDH10B_2616	-	reactivating factor for ethanolamine ammonia lyase
2398	 55.18	0	2656668..2657894	-	408	170082061	eutH	ECDH10B_2617	-	inner membrane protein
2399	 58.59	+1	2658111..2659298	-	395	170082062	eutG	ECDH10B_2618	-	alcohol dehydrogenase in ethanolamine utilization
2400	 58.66	+1	2659288..2660124	-	278	170082063	eutJ	ECDH10B_2619	-	chaperonin, ethanolamine utilization protein
2401	 57.12	+1	2660135..2661538	-	467	170082064	eutE	ECDH10B_2620	-	aldehyde dehydrogenase
2402	 53.12	0	2661550..2661837	-	95	170082065	cchB	ECDH10B_2621	-	carboxysome structural protein, ethanolamine utilization protein
2403	 58.16	+1	2661944..2662237	-	97	170082066	cchA	ECDH10B_2622	-	carboxysome structural protein, ethanolamine utilization protein
2404	 58.21	+1	2662276..2663292	-	338	170082067	eutI	ECDH10B_2623	-	phosphotransacetylase subunit
2405	 58.58	+1	2663289..2664092	-	267	170082068	eutT	ECDH10B_2624	-	cobalamin adenosyltransferase in ethanolamine utilization
2406	 55.98	+1	2664089..2664790	-	233	170082069	eutQ	ECDH10B_2625	-	hypothetical protein
2407	 49.79	0	2664765..2665244	-	159	170082070	eutP	ECDH10B_2626	-	hypothetical protein
2408	 50.60	0	2665257..2665592	-	111	170082071	ypfE	ECDH10B_2627	-	carboxysome structural protein with role in ethanol utilization
2409	 54.12	0	2665885..2668164	-	759	170082072	maeB	ECDH10B_2628	-	fused malic enzyme oxidoreductase; phosphotransacetylase
2410	 50.26	0	2668453..2669403	+	316	170082073	talA	ECDH10B_2629	-	transaldolase A
2411	 54.64	0	2669423..2671426	+	667	170082074	tktB	ECDH10B_2630	-	transketolase 2, thiamin-binding
2412	 54.60	0	2671521..2672564	-	347	170082075	ypfG	ECDH10B_2631	-	hypothetical protein
2413	 48.61	0	2672690..2673265	-	191	170082076	yffH	ECDH10B_2632	-	NUDIX hydrolase
2414	 55.71	0	2673333..2675312	-	659	170082077	aegA	ECDH10B_2633	-	fused oxidoreductase: FeS binding subunit; NAD/FAD-binding subunit
2415	 51.62	0	2675518..2677218	+	566	170082078	narQ	ECDH10B_2634	-	sensory histidine kinase in two-component regulatory system with NarP (NarL)
2416	 54.46	0	2677382..2680495	+	1037	170082079	acrD	ECDH10B_2635	-	aminoglycoside/multidrug efflux system
2417	 46.78	0	2681034..2681390	+	118	170082080	yffB	ECDH10B_2636	-	hypothetical protein
2418	 53.46	0	2681394..2682521	+	375	170082081	dapE	ECDH10B_2637	-	N-succinyl-diaminopimelate deacylase
2419	 48.26	0	2682549..2682749	+	66	170082082	ypfN	ECDH10B_2638	-	hypothetical protein
2420	 53.93	0	2682859..2683557	-	232	170082083	ypfH	ECDH10B_2639	-	hydrolase
2421	 55.26	0	2683631..2685646	-	671	170082084	ypfI	ECDH10B_2640	-	hydrolase
2422	 53.59	0	2685661..2686524	-	287	170082085	ypfJ	ECDH10B_2641	-	hypothetical protein
2423	 52.24	0	2686692..2687405	-	237	170082086	purC	ECDH10B_2642	-	phosphoribosylaminoimidazole-succinocarboxamide synthetase
2424	 55.46	0	2687618..2688652	-	344	170082087	nlpB	ECDH10B_2643	-	lipoprotein
2425	 51.76	0	2688669..2689547	-	292	170082088	dapA	ECDH10B_2644	-	dihydrodipicolinate synthase
2426	 50.09	0	2689693..2690265	+	190	170082089	gcvR	ECDH10B_2645	-	DNA-binding transcriptional repressor, regulatory protein accessory to GcvA
2427	 49.47	0	2690265..2690735	+	156	170082090	bcp	ECDH10B_2646	-	thiol peroxidase, thioredoxin-dependent
2428	 56.31	+1	2690988..2691605	+	205	170082091	hyfA	ECDH10B_2647	-	hydrogenase 4, 4Fe-4S subunit
2429	 54.73	0	2691605..2693623	+	672	170082092	hyfB	ECDH10B_2648	-	hydrogenase 4, membrane subunit
2430	 53.69	0	2693634..2694581	+	315	170082093	hyfC	ECDH10B_2649	-	hydrogenase 4, membrane subunit
2431	 55.35	0	2694598..2696037	+	479	170082094	hyfD	ECDH10B_2650	-	hydrogenase 4, membrane subunit
2432	 53.30	0	2696049..2696699	+	216	170082095	hyfE	ECDH10B_2651	-	hydrogenase 4, membrane subunit
2433	 53.89	0	2696704..2698284	+	526	170082096	hyfF	ECDH10B_2652	-	hydrogenase 4, membrane subunit
2434	 54.32	0	2698274..2699941	+	555	170082097	hyfG	ECDH10B_2653	-	hydrogenase 4, subunit
2435	 54.95	0	2699951..2700496	+	181	170082098	hyfH	ECDH10B_2654	-	hydrogenase 4, Fe-S subunit
2436	 55.73	0	2700493..2701251	+	252	170082099	hyfI	ECDH10B_2655	-	hydrogenase 4, Fe-S subunit
2437	 52.66	0	2701244..2701657	+	137	170082100	hyfJ	ECDH10B_2656	-	processing element hydrogenase 4
2438	 52.61	0	2701687..2703699	+	670	170082101	hyfR	ECDH10B_2657	-	DNA-binding transcriptional activator, formate sensing
2439	 51.24	0	2703721..2704569	+	282	170082102	focB	ECDH10B_2658	-	formate transporter
2440	 54.14	0	2704607..2705668	-	353	170082103	yfgO	ECDH10B_2659	-	inner membrane protein
2441	 53.89	0	2705881..2707344	+	487	170082104	yfgC	ECDH10B_2660	-	peptidase
2442	 52.50	0	2707365..2707724	+	119	170082105	yfgD	ECDH10B_2661	-	oxidoreductase
2443	 53.15	0	2707862..2708608	-	248