IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2327	 46.23	-1	2583554..2584189	-	211	170081990	yfdX	ECDH10B_2540	-	hypothetical protein
2328	 40.22	-2	2584485..2584760	+	91	170081991	ypdI	ECDH10B_2541	-	lipoprotein involved in colanic acid biosynthesis
2329	 48.15	0	2584837..2585079	-	80	170081992	yfdY	ECDH10B_2542	-	inner membrane protein
2330	 51.47	0	2585432..2586352	+	306	170081993	lpxP	ECDH10B_2543	-	palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase
2331	 54.96	0	2586844..2588082	-	412	170081994	yfdZ	ECDH10B_2544	-	prediected aminotransferase, PLP-dependent
2332	 51.41	0	2588458..2590155	+	565	170081995	ypdA	ECDH10B_2545	-	sensory kinase in two-component system with YpdB
2333	 47.48	0	2590170..2590904	+	244	170081996	ypdB	ECDH10B_2546	-	response regulator in two-component system withYpdA
2334	 53.61	0	2590917..2591774	+	285	170081997	ypdC	ECDH10B_2547	-	DNA-binding protein
2335	 55.21	0	2591777..2594272	-	831	170081998	ypdD	ECDH10B_2548	-	fused PTS enzymes: Hpr component; enzyme I component; enzyme IIA component
2336	 58.29	+1	2594297..2595334	-	345	170081999	ypdE	ECDH10B_2549	-	peptidase
2337	 56.81	+1	2595334..2596419	-	361	170082000	ypdF	ECDH10B_2550	-	peptidase
2338	 54.33	0	2596434..2597681	-	415	170082001	ypdG	ECDH10B_2551	-	enzyme IIC component of PTS
2339	 51.38	0	2597703..2598029	-	108	170082002	ypdH	ECDH10B_2552	-	enzyme IIB component of PTS
2340	 51.55	0	2598248..2599213	-	321	170082003	glk	ECDH10B_2553	-	glucokinase
2341	 53.86	0	2599417..2600673	+	418	170082004	yfeO	ECDH10B_2554	-	ion channel protein
2342	 54.13	0	2600788..2601114	+	108	170082005	ypeC	ECDH10B_2555	-	hypothetical protein
2343	 53.27	0	2601255..2602493	-	412	170082006	mntH	ECDH10B_2556	-	manganese/divalent cation transporter
2344	 49.88	0	2602829..2604031	+	400	170082007	nupC	ECDH10B_2557	-	nucleoside (except guanosine) transporter
2345	 51.93	0	2604118..2605230	+	370	170082008	insL-3	ECDH10B_2558	-	IS186/IS421 transposase
2346	 49.00	0	2605430..2607619	-	729	170082009	yfeA	ECDH10B_2559	-	diguanylate cyclase
2347	 50.14	0	2608254..2608598	+	114	170082010	yfeC	ECDH10B_2562	-	DNA-binding transcriptional regulator
2348	 46.06	-1	2608600..2608992	+	130	170082011	yfeD	ECDH10B_2563	-	DNA-binding transcriptional regulator
2349	 52.54	0	2609044..2610459	-	471	170082012	gltX	ECDH10B_2564	-	glutamyl-tRNA synthetase
2350	 50.51	0	2611380..2612264	-	294	170082013	xapR	ECDH10B_2569	-	DNA-binding transcriptional activator
2351	 48.05	0	2612516..2613772	-	418	170082014	xapB	ECDH10B_2570	-	xanthosine transporter
2352	 51.68	0	2613832..2614665	-	277	170082015	xapA	ECDH10B_2571	-	purine nucleoside phosphorylase II
2353	 45.23	-1	2614914..2615678	+	254	170082016	yfeN	ECDH10B_2572	-	outer membrane protein
2354	 53.94	0	2615717..2616643	-	308	170082017	yfeR	ECDH10B_2573	-	DNA-binding transcriptional regulator
2355	 51.75	0	2616733..2617731	+	332	170082018	yfeH	ECDH10B_2574	-	inner membrane protein
2356	 51.60	0	2617728..2617946	-	72	170082019	ypeB	ECDH10B_2575	-	hypothetical protein
2357	 54.41	0	2617948..2619963	-	671	170082020	ligA	ECDH10B_2576	-	DNA ligase, NAD(+)-dependent
2358	 55.12	0	2620034..2621020	-	328	170082021	zipA	ECDH10B_2577	-	cell division protein involved in Z ring assembly
2359	 50.13	0	2621250..2622011	+	253	170082022	cysZ	ECDH10B_2578	-	inner membrane protein
2360	 50.31	0	2622196..2623167	+	323	170082023	cysK	ECDH10B_2579	-	cysteine synthase A, O-acetylserine sulfhydrolase A subunit
2361	 50.78	0	2623551..2623808	+	85	170082024	ptsH	ECDH10B_2580	-	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)
2362	 49.65	0	2623853..2625580	+	575	170082025	ptsI	ECDH10B_2581	-	PEP-protein phosphotransferase of PTS system (enzyme I)
2363	 47.25	0	2625621..2626130	+	169	170082026	crr	ECDH10B_2582	-	glucose-specific enzyme IIA component of PTS
2364	 52.23	0	2626173..2627024	-	283	170082027	pdxK	ECDH10B_2583	-	pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase
2365	 46.40	0	2627129..2627503	+	124	170082028	yfeK	ECDH10B_2584	-	hypothetical protein
2366	 39.18	-2	2627536..2628270	+	244	170082029	yfeS	ECDH10B_2585	-	hypothetical protein
2367	 56.47	+1	2628459..2629370	-	303	170082030	cysM	ECDH10B_2586	-	cysteine synthase B (O-acetylserine sulfhydrolase B)
2368	 58.65	+1	2629504..2630601	-	365	170082031	cysA	ECDH10B_2587	-	sulfate/thiosulfate ABC transporter ATP-binding protein
2369	 56.62	+1	2630591..2631466	-	291	170082032	cysW	ECDH10B_2588	-	sulfate/thiosulfate ABC transporter membrane protein
2370	 56.24	+1	2631466..2632299	-	277	170082033	cysU	ECDH10B_2589	-	sulfate/thiosulfate ABC transporter membrane protein
2371	 53.79	0	2632299..2633315	-	338	170082034	cysP	ECDH10B_2590	-	thiosulfate ABC transporter periplasmic substrate-binding protein
2372	 55.30	0	2633619..2634410	-	263	170082035	ucpA	ECDH10B_2591	-	oxidoredutase, sulfate metabolism protein
2373	 51.63	0	2634539..2635396	-	285	170082036	yfeT	ECDH10B_2592	-	DNA-binding transcriptional regulator
2374	 53.51	0	2635560..2636456	+	298	170082037	yfeU	ECDH10B_2593	-	PTS component
2375	 56.56	+1	2636460..2637884	+	474	170082038	murP	ECDH10B_2594	-	fused PTS enzymes: IIB component; IIC component
2376	 51.88	0	2637889..2639193	+	434	170082039	yfeW	ECDH10B_2595	-	periplasmic esterase
2377	 56.00	+1	2639433..2640332	-	299	170082040	yfeX	ECDH10B_2596	-	hypothetical protein
2378	 50.87	0	2640428..2641003	-	191	170082041	yfeY	ECDH10B_2597	-	hypothetical protein
2379	 52.89	0	2641064..2641513	-	149	170082042	yfeZ	ECDH10B_2598	-	inner membrane protein
2380	 51.64	0	2641500..2641925	-	141	170082043	ypeA	ECDH10B_2599	-	acyltransferase
2381	 49.77	0	2642139..2643008	+	289	170082044	amiA	ECDH10B_2600	-	N-acetylmuramoyl-l-alanine amidase I
2382	 54.67	0	2643012..2643911	+	299	170082045	hemF	ECDH10B_2601	-	coproporphyrinogen III oxidase
2383	 53.37	0	2643917..2644969	-	350	170082046	yfeG	ECDH10B_2602	-	DNA-binding transcriptional regulator
2384	 58.08	+1	2645015..2645515	-	166	170082047	yffI	ECDH10B_2603	-	carboxysome structural protein with role in ethanolamine utilization
2385	 56.36	+1	2645528..2646187	-	219	170082048	eutL	ECDH10B_2604	-	carboxysome structural protein with role in ethanolamine utilization
2386	 56.64	+1	2646197..2647084	-	295	170082049	eutC	ECDH10B_2605	-	ethanolamine ammonia-lyase, small subunit (light chain)
2387	 55.65	0	2647105..2648466	-	453	170082050	eutB	ECDH10B_2606	-	ethanolamine ammonia-lyase, large subunit, heavy chain
2388	 53.47	0	2648558..2649853	+	431	170082051	intZ	ECDH10B_2607	-	CPZ-55 prophage; integrase
2389	 44.39	-1	2650044..2650685	+	213	170082052	yffL	ECDH10B_2608	-	CPZ-55 prophage; hypothetical protein
2390	 48.78	0	2651155..2651400	+	81	170082053	yffM	ECDH10B_2609	-	CPZ-55 prophage; hypothetical protein
2391	 46.61	0	2651397..2651780	+	127	170082054	yffN	ECDH10B_2610	-	CPZ-55 prophage; hypothetical protein
2392	 48.92	0	2651898..2652314	+	138	170082055	yffO	ECDH10B_2611	-	CPZ-55 prophage; hypothetical protein
2393	 52.36	0	2652311..2652904	+	197	170082056	yffP	ECDH10B_2612	-	CPZ-55 prophage; hypothetical protein
2394	 44.02	-1	2653364..2653756	+	130	170082057	yffQ	ECDH10B_2613	-	CPZ-55 prophage; hypothetical protein
2395	 44.02	-1	2653767..2654159	+	130	170082058	yffR	ECDH10B_2614	-	CPZ-55 prophage; hypothetical protein
2396	 49.88	0	2654280..2655119	+	279	170082059	yffS	ECDH10B_2615	-	CPZ-55 prophage; hypothetical protein
2397	 59.12	+1	2655268..2656671	-	467	170082060	eutA	ECDH10B_2616	-	reactivating factor for ethanolamine ammonia lyase
2398	 55.18	0	2656668..2657894	-	408	170082061	eutH	ECDH10B_2617	-	inner membrane protein
2399	 58.59	+1	2658111..2659298	-	395	170082062	eutG	ECDH10B_2618	-	alcohol dehydrogenase in ethanolamine utilization
2400	 58.66	+1	2659288..2660124	-	278	170082063	eutJ	ECDH10B_2619	-	chaperonin, ethanolamine utilization protein
2401	 57.12	+1	2660135..2661538	-	467	170082064	eutE	ECDH10B_2620	-	aldehyde dehydrogenase
2402	 53.12	0	2661550..2661837	-	95	170082065	cchB	ECDH10B_2621	-	carboxysome structural protein, ethanolamine utilization protein
2403	 58.16	+1	2661944..2662237	-	97	170082066	cchA	ECDH10B_2622	-	carboxysome structural protein, ethanolamine utilization protein
2404	 58.21	+1	2662276..2663292	-	338	170082067	eutI	ECDH10B_2623	-	phosphotransacetylase subunit
2405	 58.58	+1	2663289..2664092	-	267	170082068	eutT	ECDH10B_2624	-	cobalamin adenosyltransferase in ethanolamine utilization
2406	 55.98	+1	2664089..2664790	-	233	170082069	eutQ	ECDH10B_2625	-	hypothetical protein
2407	 49.79	0	2664765..2665244	-	159	170082070	eutP	ECDH10B_2626	-	hypothetical protein
2408	 50.60	0	2665257..2665592	-	111	170082071	ypfE	ECDH10B_2627	-	carboxysome structural protein with role in ethanol utilization
2409	 54.12	0	2665885..2668164	-	759	170082072	maeB	ECDH10B_2628	-	fused malic enzyme oxidoreductase; phosphotransacetylase
2410	 50.26	0	2668453..2669403	+	316	170082073	talA	ECDH10B_2629	-	transaldolase A
2411	 54.64	0	2669423..2671426	+	667	170082074	tktB	ECDH10B_2630	-	transketolase 2, thiamin-binding
2412	 54.60	0	2671521..2672564	-	347	170082075	ypfG	ECDH10B_2631	-	hypothetical protein
2413	 48.61	0	2672690..2673265	-	191	170082076	yffH	ECDH10B_2632	-	NUDIX hydrolase
2414	 55.71	0	2673333..2675312	-	659	170082077	aegA	ECDH10B_2633	-	fused oxidoreductase: FeS binding subunit; NAD/FAD-binding subunit
2415	 51.62	0	2675518..2677218	+	566	170082078	narQ	ECDH10B_2634	-	sensory histidine kinase in two-component regulatory system with NarP (NarL)
2416	 54.46	0	2677382..2680495	+	1037	170082079	acrD	ECDH10B_2635	-	aminoglycoside/multidrug efflux system
2417	 46.78	0	2681034..2681390	+	118	170082080	yffB	ECDH10B_2636	-	hypothetical protein
2418	 53.46	0	2681394..2682521	+	375	170082081	dapE	ECDH10B_2637	-	N-succinyl-diaminopimelate deacylase
2419	 48.26	0	2682549..2682749