IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.13   STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
188	 50.95	0	217647..218225	+	192	170079851	lpcA	ECDH10B_0204	-	D-sedoheptulose 7-phosphate isomerase
189	 53.65	0	218431..219198	+	255	170079852	yafJ	ECDH10B_0205	-	amidotransfease
190	 48.45	0	219169..219909	-	246	170079853	yafK	ECDH10B_0206	-	hypothetical protein
191	 39.43	-2	220065..220343	-	92	170079854	yafQ	ECDH10B_0207	-	toxin of the YafQ-DinJ toxin-antitoxin system
192	 46.74	0	220346..220606	-	86	170079855	dinJ	ECDH10B_0208	-	antitoxin of YafQ-DinJ toxin-antitoxin system
193	 52.27	0	220816..221565	+	249	170079856	yafL	ECDH10B_0209	-	C40 family peptidase
194	 44.78	-1	221741..222238	+	165	170079857	yafM	ECDH10B_0210	-	hypothetical protein
195	 54.17	0	225002..226057	+	351	170079858	dinB	ECDH10B_0213	-	DNA polymerase IV
196	 42.18	-1	226109..226402	+	97	170079859	yafN	ECDH10B_0214	-	antitoxin of the YafO-YafN toxin-antitoxin system
197	 43.61	-1	226405..226803	+	132	170079860	yafO	ECDH10B_0215	-	toxin of the YafO-YafN toxin-antitoxin system
198	 43.27	-1	226813..227265	+	150	170079861	yafP	ECDH10B_0216	-	acyltransferase
199	 51.37	0	228363..229820	-	485	170079862	pepD	ECDH10B_0219	-	aminoacyl-histidine dipeptidase (peptidase D)
200	 51.85	0	230081..230539	+	152	170079863	gpt	ECDH10B_0220	-	guanine-xanthine phosphoribosyltransferase
201	 53.65	0	230631..231875	+	414	170079864	frsA	ECDH10B_0221	-	fermentation/respiration switch protein
202	 50.50	0	231933..232334	+	133	170079865	crl	ECDH10B_0222	-	DNA-binding transcriptional regulator
203	 44.70	-1	232373..233428	-	351	170079866	phoE	ECDH10B_0223	-	outer membrane phosphoporin protein E
204	 56.25	+1	233716..234819	+	367	170079867	proB	ECDH10B_0224	-	gamma-glutamate kinase
205	 54.31	0	234831..236084	+	417	170079868	proA	ECDH10B_0225	-	gamma-glutamylphosphate reductase
206	 51.17	0	236656..236997	-	113	170079869	ykfI	ECDH10B_0227	-	CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system
207	 56.92	+1	237018..237335	-	105	170079870	yafW	ECDH10B_0228	-	CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system
208	 55.86	0	237354..237575	-	73	170079871	ykfH	ECDH10B_0229	-	hypothetical protein
209	 58.49	+1	237584..238060	-	158	170079872	ykfG	ECDH10B_0230	-	CP4-6 prophage; DNA repair protein
210	 55.56	0	238076..238534	-	152	170079873	yafX	ECDH10B_0231	-	CP4-6 prophage; hypothetical protein
211	 58.75	+1	238632..238871	-	79	170079874	ykfF	ECDH10B_0232	-	CP4-6 prophage; hypothetical protein
212	 52.56	0	238948..239415	-	155	170079875	ykfB	ECDH10B_0233	-	CP4-6 prophage; hypothetical protein
213	 50.68	0	239438..239881	-	147	170079876	yafY	ECDH10B_0234	-	CP4-6 prophage; inner membrane lipoprotein
214	 57.79	+1	240512..241333	-	273	170079877	yafZ	ECDH10B_0237	-	CP4-6 prophage; hypothetical protein
215	 56.83	+1	241425..242288	-	287	170079878	ykfA	ECDH10B_0238	-	CP4-6 prophage; GTP-binding protein
216	 47.99	0	242617..243510	-	297	170079879	perR	ECDH10B_0239	-	CP4-6 prophage; DNA-binding transcriptional regulator
217	 43.70	-1	243570..243974	+	134	170079880	insN-1	ECDH10B_0240	-	CP4-6 prophage; partial regulator of insertion element IS911A
218	 45.83	-1	243931..245082	+	383	170079881	insI-1	ECDH10B_0241	-	CP4-6 prophage; IS30 transposase
219	 55.63	0	245158..245583	+	141	170079882	insO-1	ECDH10B_0243	-	CP4-6 prophage; partial transposase of insertion element IS911A
220	 54.67	0	247429..248445	-	338	170079883	insH-1	ECDH10B_0245	-	CP4-6 prophage; IS5 transposase and trans-activator
221	 54.84	0	248653..250056	+	467	170079884	mmuP	ECDH10B_0246	-	CP4-6 prophage; S-methylmethionine transporter
222	 60.34	+1	250043..250975	+	310	170079885	mmuM	ECDH10B_0247	-	CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase
223	 56.35	+1	251084..252130	-	348	170079886	afuC	ECDH10B_0248	-	CP4-6 prophage; ferric ABC transporter ATP-binding protein
224	 55.92	+1	252142..252504	-	120	170079887	afuB	ECDH10B_0249	-	CP4-6 prophage; ferric ABC transporter membrane protein
225	 55.16	0	252506..253009	-	167	170079888	insB-2	ECDH10B_0250	-	CP4-6 prophage; IS1 transposase InsAB'
226	 53.26	0	252928..253203	-	91	170079889	insA-2	ECDH10B_0251	-	CP4-6 prophage; IS1 repressor protein InsA
227	 45.13	-1	253352..253690	-	112	170079890	ykgN	ECDH10B_0252	-	IS protein
228	 51.00	0	253713..254063	-	116	170079891	yagB	ECDH10B_0253	-	CP4-6 prophage; hypothetical protein
229	 62.08	+2	254157..255311	-	384	170079892	yagA	ECDH10B_0254	-	CP4-6 prophage; DNA-binding transcriptional regulator
230	 61.18	+2	255585..256514	+	309	170079893	yagE	ECDH10B_0255	-	CP4-6 prophage; lyase/synthase
231	 66.77	+2	256529..258496	+	655	170079894	yagF	ECDH10B_0256	-	CP4-6 prophage; dehydratase
232	 62.47	+2	258723..260105	+	460	170079895	yagG	ECDH10B_0257	-	CP4-6 prophage; sugar transporter
233	 64.37	+2	260117..261727	+	536	170079896	yagH	ECDH10B_0258	-	CP4-6 prophage; xylosidase/arabinosidase
234	 58.81	+1	264075..265079	-	334	170079897	argF	ECDH10B_0261	-	CP4-6 prophage; ornithine carbamoyltransferase 2, chain F
235	 55.16	0	265423..265926	-	167	170079898	insB-3	ECDH10B_0262	-	CP4-6 prophage; IS1 transposase InsAB'
236	 53.26	0	265845..266120	-	91	170079899	insA-3	ECDH10B_0263	-	CP4-6 prophage; IS1 repressor protein InsA
237	 48.91	0	266274..267005	+	243	170079900	yagJ	ECDH10B_0264	-	CP4-6 prophage; hypothetical protein
238	 44.82	-1	267096..267722	-	208	170079901	yagK	ECDH10B_0265	-	CP4-6 prophage; hypothetical protein
239	 37.34	-2	267994..268692	-	232	170079902	yagL	ECDH10B_0266	-	CP4-6 prophage; DNA-binding protein
240	 36.26	-2	268719..269573	-	284	170079903	yagM	ECDH10B_0267	-	CP4-6 prophage; hypothetical protein
241	 43.54	-1	269913..270353	-	146	170079904	yagN	ECDH10B_0268	-	CP4-6 prophage; hypothetical protein
242	 44.33	-1	270470..271870	-	466	170079905	intF	ECDH10B_0269	-	CP4-6 prophage; phage integrase
243	 52.55	0	272155..272565	-	136	170079906	yagP	ECDH10B_0270	-	transcriptional regulator
244	 59.98	+1	272544..273500	-	318	170079907	yagQ	ECDH10B_0271	-	hypothetical protein
245	 59.44	+1	273510..275708	-	732	170079908	yagR	ECDH10B_0272	-	oxidoreductase
246	 60.71	+2	275705..276661	-	318	170079909	yagS	ECDH10B_0273	-	oxidoreductase
247	 54.78	0	276658..277347	-	229	170079910	yagT	ECDH10B_0274	-	xanthine dehydrogenase, 2Fe-2S subunit
248	 45.20	-1	277765..278379	+	204	170079911	yagU	ECDH10B_0275	-	inner membrane protein
249	 50.30	0	278627..278956	-	109	170079912	ykgJ	ECDH10B_0276	-	ferredoxin
250	 53.02	0	279269..279979	-	236	170079913	yagV	ECDH10B_0277	-	hypothetical protein
251	 51.58	0	279948..281591	-	547	170079914	yagW	ECDH10B_0278	-	receptor
252	 55.27	0	281581..284106	-	841	170079915	yagX	ECDH10B_0279	-	aromatic compound dioxygenase
253	 54.86	0	284132..284800	-	222	170079916	matC	ECDH10B_0280	-	hypothetical protein
254	 52.89	0	284858..285445	-	195	170079917	matB	ECDH10B_0281	-	MAT fimbrillin
255	 39.09	-2	285520..286110	-	196	170079918	matA	ECDH10B_0282	-	regulator
256	 43.86	-1	286886..287113	+	75	170079919	ykgL	ECDH10B_0283	-	hypothetical protein
257	 41.84	-1	287148..287288	-	46	170079920	ykgO	ECDH10B_0284	-	rpmJ (L36) paralog
258	 45.83	-1	287288..287551	-	87	170079921	ykgM	ECDH10B_0285	-	rpmE (L31) paralog
259	 48.31	0	289131..290018	+	295	170079922	eaeH	ECDH10B_0286	-	attaching and effacing protein, pathogenesis factor
260	 50.16	0	290056..290364	+	102	170079923	insE-1	ECDH10B_0287	-	IS3 element protein InsE
261	 55.13	0	290361..291227	+	288	170079924	insF-1	ECDH10B_0288	-	IS3 element protein InsF
262	 43.09	-1	291224..291910	-	228	170079925	ykgA	ECDH10B_0289	-	DNA-binding transcriptional regulator
263	 44.95	-1	292500..293093	-	197	170079926	ykgB	ECDH10B_0290	-	inner membrane protein
264	 35.44	-2	293105..293341	-	78	170079927	ykgI	ECDH10B_0291	-	hypothetical protein
265	 45.55	-1	293450..294775	-	441	170079928	ykgC	ECDH10B_0292	-	oxidoreductase
266	 51.23	0	295001..295855	+	284	170079929	ykgD	ECDH10B_0293	-	DNA-binding transcriptional regulator
267	 50.56	0	296382..297101	+	239	170079930	ykgE	ECDH10B_0294	-	oxidoreductase
268	 50.21	0	297112..298539	+	475	170079931	ykgF	ECDH10B_0295	-	amino acid dehydrogenase
269	 52.16	0	298532..299227	+	231	170079932	ykgG	ECDH10B_0296	-	transporter
270	 36.92	-2	299470..300138	-	222	170079933	ykgH	ECDH10B_0297	-	inner membrane protein
271	 57.09	+1	300351..302021	-	556	170079934	betA	ECDH10B_0298	-	choline dehydrogenase, a flavoprotein
272	 58.25	+1	302035..303507	-	490	170079935	betB	ECDH10B_0299	-	betaine aldehyde dehydrogenase, NAD-dependent
273	 56.80	+1	303521..304108	-	195	170079936	betI	ECDH10B_0300	-	DNA-binding transcriptional repressor
274	 55.31	0	304237..306270	+	677	170079937	betT	ECDH10B_0301	-	choline transporter of high affinity
275	 45.91	-1	307145..308233	+	362	170079938	yahA	ECDH10B_0302	-	DNA-binding transcriptional regulator
276	 49.30	0	308275..309207	-	310	170079939	yahB	ECDH10B_0303	-	DNA-bindng transcriptional regulator
277	 52.81	0	309299..309796	-	165	170079940	yahC	ECDH10B_0304	-	inner membrane protein
278	 45.38	-1	310054..310659	+	201	170079941	yahD	ECDH10B_0305	-	transcription regulator
279	 47.11	0	310699..311562	+	287	170079942	yahE	ECDH10B_0306	-	hypothetical protein
280	 55.56	0	311552..313099	+	515	170079943	yahF	ECDH10B_0307	-	acyl-CoA synthetase
281	 57.43	+1	314014..315225	+	403	170079944	mhpT	ECDH10B_0308	-	3-hydroxyphenylpropionic transporter
282	 48.15	0	315327..315866	+	179