IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.13   STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2261	 52.55	0	2515017..2515703	-	228	170081924	hisQ	ECDH10B_2470	-	histidine/lysine/arginine/ornithine ABC transporter membrane protein
2262	 48.79	0	2515793..2516575	-	260	170081925	hisJ	ECDH10B_2471	-	histidine/lysine/arginine/ornithine ABC transporter periplasmic-binding protein
2263	 50.19	0	2516796..2517578	-	260	170081926	argT	ECDH10B_2472	-	lysine/arginine/ornithine ABC transporter periplasmic-binding protein
2264	 53.16	0	2517844..2518413	-	189	170081927	ubiX	ECDH10B_2473	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2265	 52.90	0	2518508..2520025	-	505	170081928	purF	ECDH10B_2474	-	amidophosphoribosyltransferase
2266	 49.08	0	2520062..2520550	-	162	170081929	cvpA	ECDH10B_2475	-	membrane protein required for colicin V production
2267	 57.01	+1	2520809..2521471	-	220	170081930	dedD	ECDH10B_2476	-	hypothetical protein
2268	 56.03	+1	2521461..2522729	-	422	170081931	folC	ECDH10B_2477	-	bifunctional folylpolyglutamate synthase and dihydrofolate synthase
2269	 55.41	0	2522799..2523713	-	304	170081932	accD	ECDH10B_2478	-	acetyl-CoA carboxylase, beta (carboxyltranferase) subunit
2270	 48.94	0	2523869..2524528	-	219	170081933	dedA	ECDH10B_2479	-	inner membrane protein
2271	 55.35	0	2524611..2525423	-	270	170081934	truA	ECDH10B_2480	-	tRNA pseudouridine synthase A
2272	 54.93	0	2525423..2526436	-	337	170081935	usg	ECDH10B_2481	-	semialdehyde dehydrogenase
2273	 53.03	0	2526502..2527638	-	378	170081936	pdxB	ECDH10B_2482	-	erythronate-4-phosphate dehydrogenase
2274	 52.01	0	2527737..2528732	+	331	170081937	flk	ECDH10B_2483	-	flagella assembly protein
2275	 56.57	+1	2528729..2529907	-	392	170081938	yfcJ	ECDH10B_2484	-	transporter
2276	 56.59	+1	2530172..2531392	-	406	170081939	fabB	ECDH10B_2485	-	3-oxoacyl-[acyl-carrier-protein] synthase I
2277	 52.86	0	2531551..2533557	+	668	170081940	mnmC	ECDH10B_2486	-	bifunctional 5-carboxymethylamino-methyl-2-thiouridine oxidoreductase and 5-aminomethyl-2-thiouridine methylase
2278	 52.69	0	2533678..2533956	-	92	170081941	yfcL	ECDH10B_2487	-	hypothetical protein
2279	 50.27	0	2533990..2534538	-	182	170081942	yfcM	ECDH10B_2488	-	hypothetical protein
2280	 52.72	0	2534538..2535347	-	269	170081943	yfcA	ECDH10B_2489	-	inner membrane protein
2281	 55.39	0	2535347..2536171	-	274	170081944	mepA	ECDH10B_2490	-	murein DD-endopeptidase
2282	 56.72	+1	2536175..2537260	-	361	170081945	aroC	ECDH10B_2491	-	chorismate synthase
2283	 52.52	0	2537295..2538227	-	310	170081946	prmB	ECDH10B_2492	-	ribosomal protein L3 N5-glutamine methyltransferase
2284	 53.26	0	2538393..2538944	+	183	170081947	yfcN	ECDH10B_2493	-	hypothetical protein
2285	 45.50	-1	2539015..2539836	-	273	170081948	yfcO	ECDH10B_2494	-	hypothetical protein
2286	 48.70	0	2539838..2540377	-	179	170081949	yfcP	ECDH10B_2495	-	fimbrial-like adhesin protein
2287	 46.63	0	2540374..2540862	-	162	170081950	yfcQ	ECDH10B_2496	-	fimbrial-like adhesin protein
2288	 49.12	0	2540859..2541371	-	170	170081951	yfcR	ECDH10B_2497	-	fimbrial-like adhesin protein
2289	 51.00	0	2541371..2542123	-	250	170081952	yfcS	ECDH10B_2498	-	periplasmic pilus chaperone
2290	 53.29	0	2542143..2543039	-	298	170081953	yfcT	ECDH10B_2499	-	outer membrane export usher protein
2291	 51.01	0	2543052..2544788	-	578	170081954	yfcU	ECDH10B_2500	-	export usher protein
2292	 46.10	-1	2544870..2545433	-	187	170081955	yfcV	ECDH10B_2502	-	fimbrial-like adhesin protein
2293	 53.29	0	2546114..2546599	-	161	170081956	sixA	ECDH10B_2503	-	phosphohistidine phosphatase
2294	 52.26	0	2546802..2548946	-	714	170081957	fadJ	ECDH10B_2504	-	fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase
2295	 55.84	0	2548946..2550256	-	436	170081958	yfcY	ECDH10B_2505	-	beta-ketoacyl-CoA thiolase, anaerobic, subunit
2296	 51.58	0	2550437..2550721	-	94	170081959	yfcZ	ECDH10B_2506	-	hypothetical protein
2297	 49.81	0	2551087..2552433	+	448	170081960	fadL	ECDH10B_2507	-	long-chain fatty acid outer membrane transporter
2298	 35.51	-2	2552799..2553857	+	352	170081961	yfdF	ECDH10B_2508	-	hypothetical protein
2299	 51.85	0	2554039..2554794	-	251	170081962	vacJ	ECDH10B_2509	-	lipoprotein
2300	 48.55	0	2555088..2556020	+	310	170081963	yfdC	ECDH10B_2510	-	inner membrane protein
2301	 47.75	0	2556332..2557489	+	385	170081964	intS	ECDH10B_2512	-	CPS-53 (KpLE1) prophage; prophage CPS-53 integrase
2302	 46.01	-1	2557642..2558004	+	120	170081965	yfdG	ECDH10B_2513	-	CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase)
2303	 39.52	-2	2558001..2558921	+	306	170081966	yfdH	ECDH10B_2514	-	CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase
2304	 27.55	-2	2558918..2560249	+	443	170081967	yfdI	ECDH10B_2515	-	CPS-53 (KpLE1) prophage; inner membrane protein
2305	 45.58	-1	2560864..2561304	-	146	170081968	yfdK	ECDH10B_2517	-	CPS-53 (KpLE1) prophage; hypothetical protein
2306	 49.52	0	2561331..2561849	-	172	170081969	yfdL	ECDH10B_2518	-	CPS-53 (KpLE1) prophage; hypothetical protein
2307	 52.54	0	2561899..2562174	-	91	170081970	yfdM	ECDH10B_2519	-	CPS-53 (KpLE1) prophage; methyltransferase
2308	 54.34	0	2562174..2562668	-	164	170081971	yfdN	ECDH10B_2520	-	CPS-53 (KpLE1) prophage; hypothetical protein
2309	 56.10	+1	2562665..2563033	-	122	170081972	yfdO	ECDH10B_2521	-	CPS-53 (KpLE1) prophage; defective phage replication protein O
2310	 49.44	0	2563307..2563753	+	148	170081973	yfdP	ECDH10B_2522	-	CPS-53 (KpLE1) prophage; hypothetical protein
2311	 45.70	-1	2563819..2564643	+	274	170081974	yfdQ	ECDH10B_2523	-	CPS-53 (KpLE1) prophage; hypothetical protein
2312	 46.18	-1	2564771..2565307	+	178	170081975	yfdR	ECDH10B_2524	-	CPS-53 (KpLE1) prophage; hypothetical protein
2313	 47.11	0	2565298..2565660	+	120	170081976	yfdS	ECDH10B_2525	-	CPS-53 (KpLE1) prophage; hypothetical protein
2314	 42.81	-1	2565660..2565965	+	101	170081977	yfdT	ECDH10B_2526	-	CPS-53 (KpLE1) prophage; hypothetical protein
2315	 43.26	-1	2565881..2566021	+	46	170081978	ypdJ	ECDH10B_2527	-	hypothetical protein
2316	 43.78	-1	2566097..2566297	+	66	170081979	torI	ECDH10B_2528	-	response regulator inhibitor for tor operon
2317	 48.08	0	2566481..2567416	-	311	170081980	dsdC	ECDH10B_2529	-	DNA-binding transcriptional dual regulator
2318	 48.73	0	2567634..2568971	+	445	170081981	dsdX	ECDH10B_2530	-	transporter
2319	 50.87	0	2568989..2570317	+	442	170081982	dsdA	ECDH10B_2531	-	D-serine ammonia-lyase
2320	 41.65	-1	2570425..2571963	-	512	170081983	emrY	ECDH10B_2532	-	multidrug efflux system
2321	 41.92	-1	2571963..2573126	-	387	170081984	emrK	ECDH10B_2533	-	EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component
2322	 40.00	-2	2573542..2574156	+	204	170081985	evgA	ECDH10B_2534	-	DNA-binding response regulator in two-component regulatory system with EvgS
2323	 45.46	-1	2577810..2578955	-	381	170081986	yfdE	ECDH10B_2536	-	CoA-transferase, NAD(P)-binding
2324	 44.76	-1	2579029..2579973	-	314	170081987	yfdV	ECDH10B_2537	-	transporter
2325	 46.61	0	2580043..2581737	-	564	170081988	oxc	ECDH10B_2538	-	oxalyl-CoA decarboxylase
2326	 47.08	0	2581791..2583041	-	416	170081989	frc	ECDH10B_2539	-	formyl-CoA transferase, NAD(P)-binding
2327	 46.23	-1	2583554..2584189	-	211	170081990	yfdX	ECDH10B_2540	-	hypothetical protein
2328	 40.22	-2	2584485..2584760	+	91	170081991	ypdI	ECDH10B_2541	-	lipoprotein involved in colanic acid biosynthesis
2329	 48.15	0	2584837..2585079	-	80	170081992	yfdY	ECDH10B_2542	-	inner membrane protein
2330	 51.47	0	2585432..2586352	+	306	170081993	lpxP	ECDH10B_2543	-	palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase
2331	 54.96	0	2586844..2588082	-	412	170081994	yfdZ	ECDH10B_2544	-	prediected aminotransferase, PLP-dependent
2332	 51.41	0	2588458..2590155	+	565	170081995	ypdA	ECDH10B_2545	-	sensory kinase in two-component system with YpdB
2333	 47.48	0	2590170..2590904	+	244	170081996	ypdB	ECDH10B_2546	-	response regulator in two-component system withYpdA
2334	 53.61	0	2590917..2591774	+	285	170081997	ypdC	ECDH10B_2547	-	DNA-binding protein
2335	 55.21	0	2591777..2594272	-	831	170081998	ypdD	ECDH10B_2548	-	fused PTS enzymes: Hpr component; enzyme I component; enzyme IIA component
2336	 58.29	+1	2594297..2595334	-	345	170081999	ypdE	ECDH10B_2549	-	peptidase
2337	 56.81	+1	2595334..2596419	-	361	170082000	ypdF	ECDH10B_2550	-	peptidase
2338	 54.33	0	2596434..2597681	-	415	170082001	ypdG	ECDH10B_2551	-	enzyme IIC component of PTS
2339	 51.38	0	2597703..2598029	-	108	170082002	ypdH	ECDH10B_2552	-	enzyme IIB component of PTS
2340	 51.55	0	2598248..2599213	-	321	170082003	glk	ECDH10B_2553	-	glucokinase
2341	 53.86	0	2599417..2600673	+	418	170082004	yfeO	ECDH10B_2554	-	ion channel protein
2342	 54.13	0	2600788..2601114	+	108	170082005	ypeC	ECDH10B_2555	-	hypothetical protein
2343	 53.27	0	2601255..2602493	-	412	170082006	mntH	ECDH10B_2556	-	manganese/divalent cation transporter
2344	 49.88	0	2602829..2604031	+	400	170082007	nupC	ECDH10B_2557	-	nucleoside (except guanosine) transporter
2345	 51.93	0	2604118..2605230	+	370	170082008	insL-3	ECDH10B_2558	-	IS186/IS421 transposase
2346	 49.00	0	2605430..2607619	-	729	170082009	yfeA	ECDH10B_2559	-	diguanylate cyclase
2347	 50.14	0	2608254..2608598	+	114	170082010	yfeC	ECDH10B_2562	-	DNA-binding transcriptional regulator
2348	 46.06	-1	2608600..2608992	+	130	170082011	yfeD	ECDH10B_2563	-	DNA-binding transcriptional regulator
2349	 52.54	0	2609044..2610459	-	471	170082012	gltX	ECDH10B_2564	-	glutamyl-tRNA synthetase
2350	 50.51	0	2611380..2612264	-	294	170082013	xapR	ECDH10B_2569	-	DNA-binding transcriptional activator
2351	 48.05	0	2612516..2613772	-	418	170082014	xapB	ECDH10B_2570	-	xanthosine transporter
2352	 51.68	0	2613832..2614665	-	277	170082015	xapA	ECDH10B_2571	-	purine nucleoside phosphorylase II
2353	 45.23	-1	2614914..2615678	+	254