IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2231	 54.71	0	2481299..2482828	-	509	170081894	nuoM	ECDH10B_2439	-	NADH:ubiquinone oxidoreductase, membrane subunit M
2232	 57.17	+1	2482992..2484833	-	613	170081895	nuoL	ECDH10B_2440	-	NADH:ubiquinone oxidoreductase, membrane subunit L
2233	 54.79	0	2484830..2485132	-	100	170081896	nuoK	ECDH10B_2441	-	NADH:ubiquinone oxidoreductase, membrane subunit K
2234	 53.87	0	2485129..2485683	-	184	170081897	nuoJ	ECDH10B_2442	-	NADH:ubiquinone oxidoreductase, membrane subunit J
2235	 54.33	0	2485695..2486237	-	180	170081898	nuoI	ECDH10B_2443	-	NADH:ubiquinone oxidoreductase, chain I
2236	 54.19	0	2486252..2487229	-	325	170081899	nuoH	ECDH10B_2444	-	NADH:ubiquinone oxidoreductase, membrane subunit H
2237	 56.35	+1	2487226..2489958	-	910	170081900	nuoG	ECDH10B_2445	-	NADH:ubiquinone oxidoreductase, chain G
2238	 56.20	+1	2490005..2491342	-	445	170081901	nuoF	ECDH10B_2446	-	NADH:ubiquinone oxidoreductase, chain F
2239	 55.29	0	2491339..2491839	-	166	170081902	nuoE	ECDH10B_2447	-	NADH:ubiquinone oxidoreductase, chain E
2240	 55.74	0	2491842..2493644	-	600	170081903	nuoC	ECDH10B_2448	-	NADH:ubiquinone oxidoreductase, chain C,D
2241	 51.73	0	2493738..2494400	-	220	170081904	nuoB	ECDH10B_2449	-	NADH:ubiquinone oxidoreductase, chain B
2242	 53.38	0	2494416..2494859	-	147	170081905	nuoA	ECDH10B_2450	-	NADH:ubiquinone oxidoreductase, membrane subunit A
2243	 49.73	0	2495490..2496428	-	312	170081906	lrhA	ECDH10B_2451	-	DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes
2244	 50.49	0	2497348..2498565	+	405	170081907	yfbQ	ECDH10B_2452	-	aminotransferase
2245	 49.33	0	2498649..2499248	+	199	170081908	yfbR	ECDH10B_2453	-	deoxyribonucleoside 5'-monophosphatase
2246	 56.53	+1	2501226..2501876	-	216	170081909	yfbT	ECDH10B_2455	-	hydrolase or phosphatase
2247	 47.68	0	2501887..2502381	-	164	170081910	yfbU	ECDH10B_2456	-	hypothetical protein
2248	 50.88	0	2502464..2502919	-	151	170081911	yfbV	ECDH10B_2457	-	inner membrane protein
2249	 52.20	0	2503257..2504459	+	400	170081912	ackA	ECDH10B_2458	-	acetate kinase A and propionate kinase 2
2250	 55.52	0	2504534..2506678	+	714	170081913	pta	ECDH10B_2459	-	phosphate acetyltransferase
2251	 52.07	0	2506868..2508388	+	506	170081914	yfcC	ECDH10B_2460	-	inner membrane protein
2252	 53.22	0	2508421..2508963	-	180	170081915	yfcD	ECDH10B_2461	-	NUDIX hydrolase
2253	 51.89	0	2509021..2509575	-	184	170081916	yfcE	ECDH10B_2462	-	phosphatase
2254	 51.63	0	2509628..2510272	-	214	170081917	yfcF	ECDH10B_2463	-	hypothetical protein
2255	 51.39	0	2510408..2511055	+	215	170081918	yfcG	ECDH10B_2464	-	glutathione S-transferase
2256	 44.90	-1	2511112..2511474	+	120	170081919	folX	ECDH10B_2465	-	D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase
2257	 54.92	0	2511495..2512388	+	297	170081920	yfcH	ECDH10B_2466	-	hypothetical protein
2258	 45.57	-1	2512436..2513326	-	296	170081921	yfcI	ECDH10B_2467	-	putative transposase
2259	 51.94	0	2513523..2514296	-	257	170081922	hisP	ECDH10B_2468	-	histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein
2260	 49.65	0	2514304..2515020	-	238	170081923	hisM	ECDH10B_2469	-	histidine/lysine/arginine/ornithine ABC transporter membrane protein
2261	 52.55	0	2515017..2515703	-	228	170081924	hisQ	ECDH10B_2470	-	histidine/lysine/arginine/ornithine ABC transporter membrane protein
2262	 48.79	0	2515793..2516575	-	260	170081925	hisJ	ECDH10B_2471	-	histidine/lysine/arginine/ornithine ABC transporter periplasmic-binding protein
2263	 50.19	0	2516796..2517578	-	260	170081926	argT	ECDH10B_2472	-	lysine/arginine/ornithine ABC transporter periplasmic-binding protein
2264	 53.16	0	2517844..2518413	-	189	170081927	ubiX	ECDH10B_2473	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2265	 52.90	0	2518508..2520025	-	505	170081928	purF	ECDH10B_2474	-	amidophosphoribosyltransferase
2266	 49.08	0	2520062..2520550	-	162	170081929	cvpA	ECDH10B_2475	-	membrane protein required for colicin V production
2267	 57.01	+1	2520809..2521471	-	220	170081930	dedD	ECDH10B_2476	-	hypothetical protein
2268	 56.03	+1	2521461..2522729	-	422	170081931	folC	ECDH10B_2477	-	bifunctional folylpolyglutamate synthase and dihydrofolate synthase
2269	 55.41	0	2522799..2523713	-	304	170081932	accD	ECDH10B_2478	-	acetyl-CoA carboxylase, beta (carboxyltranferase) subunit
2270	 48.94	0	2523869..2524528	-	219	170081933	dedA	ECDH10B_2479	-	inner membrane protein
2271	 55.35	0	2524611..2525423	-	270	170081934	truA	ECDH10B_2480	-	tRNA pseudouridine synthase A
2272	 54.93	0	2525423..2526436	-	337	170081935	usg	ECDH10B_2481	-	semialdehyde dehydrogenase
2273	 53.03	0	2526502..2527638	-	378	170081936	pdxB	ECDH10B_2482	-	erythronate-4-phosphate dehydrogenase
2274	 52.01	0	2527737..2528732	+	331	170081937	flk	ECDH10B_2483	-	flagella assembly protein
2275	 56.57	+1	2528729..2529907	-	392	170081938	yfcJ	ECDH10B_2484	-	transporter
2276	 56.59	+1	2530172..2531392	-	406	170081939	fabB	ECDH10B_2485	-	3-oxoacyl-[acyl-carrier-protein] synthase I
2277	 52.86	0	2531551..2533557	+	668	170081940	mnmC	ECDH10B_2486	-	bifunctional 5-carboxymethylamino-methyl-2-thiouridine oxidoreductase and 5-aminomethyl-2-thiouridine methylase
2278	 52.69	0	2533678..2533956	-	92	170081941	yfcL	ECDH10B_2487	-	hypothetical protein
2279	 50.27	0	2533990..2534538	-	182	170081942	yfcM	ECDH10B_2488	-	hypothetical protein
2280	 52.72	0	2534538..2535347	-	269	170081943	yfcA	ECDH10B_2489	-	inner membrane protein
2281	 55.39	0	2535347..2536171	-	274	170081944	mepA	ECDH10B_2490	-	murein DD-endopeptidase
2282	 56.72	+1	2536175..2537260	-	361	170081945	aroC	ECDH10B_2491	-	chorismate synthase
2283	 52.52	0	2537295..2538227	-	310	170081946	prmB	ECDH10B_2492	-	ribosomal protein L3 N5-glutamine methyltransferase
2284	 53.26	0	2538393..2538944	+	183	170081947	yfcN	ECDH10B_2493	-	hypothetical protein
2285	 45.50	-1	2539015..2539836	-	273	170081948	yfcO	ECDH10B_2494	-	hypothetical protein
2286	 48.70	0	2539838..2540377	-	179	170081949	yfcP	ECDH10B_2495	-	fimbrial-like adhesin protein
2287	 46.63	0	2540374..2540862	-	162	170081950	yfcQ	ECDH10B_2496	-	fimbrial-like adhesin protein
2288	 49.12	0	2540859..2541371	-	170	170081951	yfcR	ECDH10B_2497	-	fimbrial-like adhesin protein
2289	 51.00	0	2541371..2542123	-	250	170081952	yfcS	ECDH10B_2498	-	periplasmic pilus chaperone
2290	 53.29	0	2542143..2543039	-	298	170081953	yfcT	ECDH10B_2499	-	outer membrane export usher protein
2291	 51.01	0	2543052..2544788	-	578	170081954	yfcU	ECDH10B_2500	-	export usher protein
2292	 46.10	-1	2544870..2545433	-	187	170081955	yfcV	ECDH10B_2502	-	fimbrial-like adhesin protein
2293	 53.29	0	2546114..2546599	-	161	170081956	sixA	ECDH10B_2503	-	phosphohistidine phosphatase
2294	 52.26	0	2546802..2548946	-	714	170081957	fadJ	ECDH10B_2504	-	fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase
2295	 55.84	0	2548946..2550256	-	436	170081958	yfcY	ECDH10B_2505	-	beta-ketoacyl-CoA thiolase, anaerobic, subunit
2296	 51.58	0	2550437..2550721	-	94	170081959	yfcZ	ECDH10B_2506	-	hypothetical protein
2297	 49.81	0	2551087..2552433	+	448	170081960	fadL	ECDH10B_2507	-	long-chain fatty acid outer membrane transporter
2298	 35.51	-2	2552799..2553857	+	352	170081961	yfdF	ECDH10B_2508	-	hypothetical protein
2299	 51.85	0	2554039..2554794	-	251	170081962	vacJ	ECDH10B_2509	-	lipoprotein
2300	 48.55	0	2555088..2556020	+	310	170081963	yfdC	ECDH10B_2510	-	inner membrane protein
2301	 47.75	0	2556332..2557489	+	385	170081964	intS	ECDH10B_2512	-	CPS-53 (KpLE1) prophage; prophage CPS-53 integrase
2302	 46.01	-1	2557642..2558004	+	120	170081965	yfdG	ECDH10B_2513	-	CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase)
2303	 39.52	-2	2558001..2558921	+	306	170081966	yfdH	ECDH10B_2514	-	CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase
2304	 27.55	-2	2558918..2560249	+	443	170081967	yfdI	ECDH10B_2515	-	CPS-53 (KpLE1) prophage; inner membrane protein
2305	 45.58	-1	2560864..2561304	-	146	170081968	yfdK	ECDH10B_2517	-	CPS-53 (KpLE1) prophage; hypothetical protein
2306	 49.52	0	2561331..2561849	-	172	170081969	yfdL	ECDH10B_2518	-	CPS-53 (KpLE1) prophage; hypothetical protein
2307	 52.54	0	2561899..2562174	-	91	170081970	yfdM	ECDH10B_2519	-	CPS-53 (KpLE1) prophage; methyltransferase
2308	 54.34	0	2562174..2562668	-	164	170081971	yfdN	ECDH10B_2520	-	CPS-53 (KpLE1) prophage; hypothetical protein
2309	 56.10	+1	2562665..2563033	-	122	170081972	yfdO	ECDH10B_2521	-	CPS-53 (KpLE1) prophage; defective phage replication protein O
2310	 49.44	0	2563307..2563753	+	148	170081973	yfdP	ECDH10B_2522	-	CPS-53 (KpLE1) prophage; hypothetical protein
2311	 45.70	-1	2563819..2564643	+	274	170081974	yfdQ	ECDH10B_2523	-	CPS-53 (KpLE1) prophage; hypothetical protein
2312	 46.18	-1	2564771..2565307	+	178	170081975	yfdR	ECDH10B_2524	-	CPS-53 (KpLE1) prophage; hypothetical protein
2313	 47.11	0	2565298..2565660	+	120	170081976	yfdS	ECDH10B_2525	-	CPS-53 (KpLE1) prophage; hypothetical protein
2314	 42.81	-1	2565660..2565965	+	101	170081977	yfdT	ECDH10B_2526	-	CPS-53 (KpLE1) prophage; hypothetical protein
2315	 43.26	-1	2565881..2566021	+	46	170081978	ypdJ	ECDH10B_2527	-	hypothetical protein
2316	 43.78	-1	2566097..2566297	+	66	170081979	torI	ECDH10B_2528	-	response regulator inhibitor for tor operon
2317	 48.08	0	2566481..2567416	-	311	170081980	dsdC	ECDH10B_2529	-	DNA-binding transcriptional dual regulator
2318	 48.73	0	2567634..2568971	+	445	170081981	dsdX	ECDH10B_2530	-	transporter
2319	 50.87	0	2568989..2570317	+	442	170081982	dsdA	ECDH10B_2531	-	D-serine ammonia-lyase
2320	 41.65	-1	2570425..2571963	-	512	170081983	emrY	ECDH10B_2532	-	multidrug efflux system
2321	 41.92	-1	2571963..2573126	-	387	170081984	emrK	ECDH10B_2533	-	EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component
2322	 40.00	-2	2573542..2574156	+	204