IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2191	 56.08	+1	2437524..2437778	+	84	170081854	yfaE	ECDH10B_2395	-	2Fe-2S cluster-containing protein
2192	 49.46	0	2437832..2438482	-	216	170081855	inaA	ECDH10B_2396	-	hypothetical protein
2193	 41.55	-2	2438697..2438903	+	68	170081856	yfaH	ECDH10B_2397	-	hypothetical protein
2194	 45.59	-1	2438945..2440021	-	358	170081857	glpQ	ECDH10B_2398	-	periplasmic glycerophosphodiester phosphodiesterase
2195	 52.61	0	2440026..2441384	-	452	170081858	glpT	ECDH10B_2399	-	sn-glycerol-3-phosphate transporter
2196	 57.34	+1	2441657..2443285	+	542	170081859	glpA	ECDH10B_2400	-	sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)-binding
2197	 55.87	0	2443275..2444534	+	419	170081860	glpB	ECDH10B_2401	-	sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit
2198	 53.99	0	2444531..2445721	+	396	170081861	glpC	ECDH10B_2402	-	sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit
2199	 48.33	0	2445914..2446813	+	299	170081862	yfaD	ECDH10B_2403	-	hypothetical protein
2200	 53.61	0	2447052..2447855	-	267	170081863	yfaU	ECDH10B_2405	-	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
2201	 52.71	0	2447873..2449162	-	429	170081864	yfaV	ECDH10B_2406	-	transporter
2202	 52.05	0	2449219..2450436	-	405	170081865	yfaW	ECDH10B_2407	-	enolase
2203	 50.96	0	2450439..2451221	-	260	170081866	yfaX	ECDH10B_2408	-	DNA-binding transcriptional regulator
2204	 54.20	0	2451441..2452643	-	400	170081867	yfaY	ECDH10B_2409	-	hypothetical protein
2205	 53.22	0	2452743..2453285	-	180	170081868	yfaZ	ECDH10B_2410	-	outer membrane porin protein
2206	 47.65	0	2453564..2453989	+	141	170081869	yfaO	ECDH10B_2411	-	NUDIX hydrolase
2207	 43.28	-1	2454028..2454630	-	200	170081870	ais	ECDH10B_2412	-	hypothetical protein
2208	 51.32	0	2454938..2456077	+	379	170081871	arnB	ECDH10B_2413	-	UDP-4-amino-4-deoxy-L-arabinose alpha-ketoglutarate aminotransferase
2209	 49.85	0	2456081..2457049	+	322	170081872	arnC	ECDH10B_2414	-	undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase
2210	 51.13	0	2457049..2459031	+	660	170081873	arnA	ECDH10B_2415	-	fused UDP-L-Ara4N formyltransferase; UDP-GlcA C-4'-decarboxylase
2211	 52.86	0	2459028..2459918	+	296	170081874	yfbH	ECDH10B_2416	-	hypothetical protein
2212	 51.00	0	2459918..2461570	+	550	170081875	arnT	ECDH10B_2417	-	4-amino-4-deoxy-L-arabinose transferase
2213	 53.57	0	2461567..2461902	+	111	170081876	yfbW	ECDH10B_2418	-	hypothetical protein
2214	 48.58	0	2461902..2462288	+	128	170081877	yfbJ	ECDH10B_2419	-	inner membrane protein
2215	 46.82	0	2462282..2462548	-	88	170081878	pmrD	ECDH10B_2420	-	polymyxin resistance protein B
2216	 56.05	+1	2462658..2464013	-	451	170081879	menE	ECDH10B_2421	-	o-succinylbenzoate-CoA ligase
2217	 58.98	+1	2464010..2464972	-	320	170081880	menC	ECDH10B_2422	-	o-succinylbenzoyl-CoA synthase
2218	 55.59	0	2464972..2465829	-	285	170081881	menB	ECDH10B_2423	-	dihydroxynaphthoic acid synthetase
2219	 56.13	+1	2465844..2466602	-	252	170081882	yfbB	ECDH10B_2424	-	peptidase
2220	 58.11	+1	2466599..2468269	-	556	170081883	menD	ECDH10B_2425	-	bifunctional 2-oxoglutarate decarboxylase and SHCHC synthase
2221	 53.40	0	2468358..2469653	-	431	170081884	menF	ECDH10B_2426	-	isochorismate synthase 2
2222	 51.96	0	2469732..2470037	-	101	170081885	elaB	ECDH10B_2427	-	hypothetical protein
2223	 47.84	0	2470092..2470553	-	153	170081886	elaA	ECDH10B_2428	-	acyltransferase
2224	 35.40	-2	2472500..2473711	+	403	170081887	elaD	ECDH10B_2431	-	hypothetical protein
2225	 45.06	-1	2475647..2476618	+	323	170081888	yfbL	ECDH10B_2433	-	peptidase
2226	 45.63	-1	2476721..2477224	+	167	170081889	yfbM	ECDH10B_2434	-	hypothetical protein
2227	 39.05	-2	2477497..2478213	-	238	170081890	yfbN	ECDH10B_2435	-	hypothetical protein
2228	 38.36	-2	2478368..2478844	+	158	170081891	yfbO	ECDH10B_2436	-	hypothetical protein
2229	 43.43	-1	2478900..2479751	+	283	170081892	yfbP	ECDH10B_2437	-	hypothetical protein
2230	 57.43	+1	2479835..2481112	-	425	170081893	nuoN	ECDH10B_2438	-	NADH:ubiquinone oxidoreductase, membrane subunit N
2231	 54.71	0	2481299..2482828	-	509	170081894	nuoM	ECDH10B_2439	-	NADH:ubiquinone oxidoreductase, membrane subunit M
2232	 57.17	+1	2482992..2484833	-	613	170081895	nuoL	ECDH10B_2440	-	NADH:ubiquinone oxidoreductase, membrane subunit L
2233	 54.79	0	2484830..2485132	-	100	170081896	nuoK	ECDH10B_2441	-	NADH:ubiquinone oxidoreductase, membrane subunit K
2234	 53.87	0	2485129..2485683	-	184	170081897	nuoJ	ECDH10B_2442	-	NADH:ubiquinone oxidoreductase, membrane subunit J
2235	 54.33	0	2485695..2486237	-	180	170081898	nuoI	ECDH10B_2443	-	NADH:ubiquinone oxidoreductase, chain I
2236	 54.19	0	2486252..2487229	-	325	170081899	nuoH	ECDH10B_2444	-	NADH:ubiquinone oxidoreductase, membrane subunit H
2237	 56.35	+1	2487226..2489958	-	910	170081900	nuoG	ECDH10B_2445	-	NADH:ubiquinone oxidoreductase, chain G
2238	 56.20	+1	2490005..2491342	-	445	170081901	nuoF	ECDH10B_2446	-	NADH:ubiquinone oxidoreductase, chain F
2239	 55.29	0	2491339..2491839	-	166	170081902	nuoE	ECDH10B_2447	-	NADH:ubiquinone oxidoreductase, chain E
2240	 55.74	0	2491842..2493644	-	600	170081903	nuoC	ECDH10B_2448	-	NADH:ubiquinone oxidoreductase, chain C,D
2241	 51.73	0	2493738..2494400	-	220	170081904	nuoB	ECDH10B_2449	-	NADH:ubiquinone oxidoreductase, chain B
2242	 53.38	0	2494416..2494859	-	147	170081905	nuoA	ECDH10B_2450	-	NADH:ubiquinone oxidoreductase, membrane subunit A
2243	 49.73	0	2495490..2496428	-	312	170081906	lrhA	ECDH10B_2451	-	DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes
2244	 50.49	0	2497348..2498565	+	405	170081907	yfbQ	ECDH10B_2452	-	aminotransferase
2245	 49.33	0	2498649..2499248	+	199	170081908	yfbR	ECDH10B_2453	-	deoxyribonucleoside 5'-monophosphatase
2246	 56.53	+1	2501226..2501876	-	216	170081909	yfbT	ECDH10B_2455	-	hydrolase or phosphatase
2247	 47.68	0	2501887..2502381	-	164	170081910	yfbU	ECDH10B_2456	-	hypothetical protein
2248	 50.88	0	2502464..2502919	-	151	170081911	yfbV	ECDH10B_2457	-	inner membrane protein
2249	 52.20	0	2503257..2504459	+	400	170081912	ackA	ECDH10B_2458	-	acetate kinase A and propionate kinase 2
2250	 55.52	0	2504534..2506678	+	714	170081913	pta	ECDH10B_2459	-	phosphate acetyltransferase
2251	 52.07	0	2506868..2508388	+	506	170081914	yfcC	ECDH10B_2460	-	inner membrane protein
2252	 53.22	0	2508421..2508963	-	180	170081915	yfcD	ECDH10B_2461	-	NUDIX hydrolase
2253	 51.89	0	2509021..2509575	-	184	170081916	yfcE	ECDH10B_2462	-	phosphatase
2254	 51.63	0	2509628..2510272	-	214	170081917	yfcF	ECDH10B_2463	-	hypothetical protein
2255	 51.39	0	2510408..2511055	+	215	170081918	yfcG	ECDH10B_2464	-	glutathione S-transferase
2256	 44.90	-1	2511112..2511474	+	120	170081919	folX	ECDH10B_2465	-	D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase
2257	 54.92	0	2511495..2512388	+	297	170081920	yfcH	ECDH10B_2466	-	hypothetical protein
2258	 45.57	-1	2512436..2513326	-	296	170081921	yfcI	ECDH10B_2467	-	putative transposase
2259	 51.94	0	2513523..2514296	-	257	170081922	hisP	ECDH10B_2468	-	histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein
2260	 49.65	0	2514304..2515020	-	238	170081923	hisM	ECDH10B_2469	-	histidine/lysine/arginine/ornithine ABC transporter membrane protein
2261	 52.55	0	2515017..2515703	-	228	170081924	hisQ	ECDH10B_2470	-	histidine/lysine/arginine/ornithine ABC transporter membrane protein
2262	 48.79	0	2515793..2516575	-	260	170081925	hisJ	ECDH10B_2471	-	histidine/lysine/arginine/ornithine ABC transporter periplasmic-binding protein
2263	 50.19	0	2516796..2517578	-	260	170081926	argT	ECDH10B_2472	-	lysine/arginine/ornithine ABC transporter periplasmic-binding protein
2264	 53.16	0	2517844..2518413	-	189	170081927	ubiX	ECDH10B_2473	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2265	 52.90	0	2518508..2520025	-	505	170081928	purF	ECDH10B_2474	-	amidophosphoribosyltransferase
2266	 49.08	0	2520062..2520550	-	162	170081929	cvpA	ECDH10B_2475	-	membrane protein required for colicin V production
2267	 57.01	+1	2520809..2521471	-	220	170081930	dedD	ECDH10B_2476	-	hypothetical protein
2268	 56.03	+1	2521461..2522729	-	422	170081931	folC	ECDH10B_2477	-	bifunctional folylpolyglutamate synthase and dihydrofolate synthase
2269	 55.41	0	2522799..2523713	-	304	170081932	accD	ECDH10B_2478	-	acetyl-CoA carboxylase, beta (carboxyltranferase) subunit
2270	 48.94	0	2523869..2524528	-	219	170081933	dedA	ECDH10B_2479	-	inner membrane protein
2271	 55.35	0	2524611..2525423	-	270	170081934	truA	ECDH10B_2480	-	tRNA pseudouridine synthase A
2272	 54.93	0	2525423..2526436	-	337	170081935	usg	ECDH10B_2481	-	semialdehyde dehydrogenase
2273	 53.03	0	2526502..2527638	-	378	170081936	pdxB	ECDH10B_2482	-	erythronate-4-phosphate dehydrogenase
2274	 52.01	0	2527737..2528732	+	331	170081937	flk	ECDH10B_2483	-	flagella assembly protein
2275	 56.57	+1	2528729..2529907	-	392	170081938	yfcJ	ECDH10B_2484	-	transporter
2276	 56.59	+1	2530172..2531392	-	406	170081939	fabB	ECDH10B_2485	-	3-oxoacyl-[acyl-carrier-protein] synthase I
2277	 52.86	0	2531551..2533557	+	668	170081940	mnmC	ECDH10B_2486	-	bifunctional 5-carboxymethylamino-methyl-2-thiouridine oxidoreductase and 5-aminomethyl-2-thiouridine methylase
2278	 52.69	0	2533678..2533956	-	92	170081941	yfcL	ECDH10B_2487	-	hypothetical protein
2279	 50.27	0	2533990..2534538	-	182	170081942	yfcM	ECDH10B_2488	-	hypothetical protein
2280	 52.72	0	2534538..2535347	-	269	170081943	yfcA	ECDH10B_2489	-	inner membrane protein
2281	 55.39	0	2535347..2536171	-	274	170081944	mepA	ECDH10B_2490	-	murein DD-endopeptidase
2282	 56.72	+1	2536175..2537260	-	361	170081945	aroC	ECDH10B_2491	-	chorismate synthase
2283	 52.52	0	2537295..2538227	-	310