IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2150	 52.47	0	2379510..2380157	+	215	170081813	narP	ECDH10B_2350	-	DNA-binding response regulator in two-component regulatory system with NarQ or NarX
2151	 54.04	0	2380368..2381420	-	350	170081814	ccmH	ECDH10B_2351	-	heme lyase, CcmH subunit
2152	 54.48	0	2381417..2381974	-	185	170081815	ccmG	ECDH10B_2352	-	periplasmic thioredoxin of cytochrome c-type biogenesis
2153	 57.10	+1	2381971..2383914	-	647	170081816	ccmF	ECDH10B_2353	-	heme lyase, CcmF subunit
2154	 53.54	0	2383911..2384390	-	159	170081817	ccmE	ECDH10B_2354	-	periplasmic heme chaperone
2155	 57.14	+1	2384387..2384596	-	69	170081818	ccmD	ECDH10B_2355	-	cytochrome c biogenesis protein
2156	 55.28	0	2384593..2385330	-	245	170081819	ccmC	ECDH10B_2356	-	heme ABC transporter membrane protein
2157	 55.96	+1	2385372..2386034	-	220	170081820	ccmB	ECDH10B_2357	-	heme ABC transporter membrane protein
2158	 55.93	+1	2386031..2386654	-	207	170081821	ccmA	ECDH10B_2358	-	heme ABC transporter ATP-binding protein
2159	 51.58	0	2386667..2387269	-	200	170081822	napC	ECDH10B_2359	-	nitrate reductase, cytochrome c-type,periplasmic
2160	 55.56	0	2387279..2387728	-	149	170081823	napB	ECDH10B_2360	-	nitrate reductase, small, cytochrome C550 subunit, periplasmic
2161	 55.90	+1	2387725..2388588	-	287	170081824	napH	ECDH10B_2361	-	ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)
2162	 59.05	+1	2388575..2389270	-	231	170081825	napG	ECDH10B_2362	-	ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)
2163	 56.13	+1	2389277..2391763	-	828	170081826	napA	ECDH10B_2363	-	nitrate reductase, periplasmic, large subunit
2164	 54.55	0	2391760..2392023	-	87	170081827	napD	ECDH10B_2364	-	assembly protein for periplasmic nitrate reductase
2165	 55.35	0	2392013..2392507	-	164	170081828	napF	ECDH10B_2365	-	ferredoxin-type protein, role in electron transfer to periplasmic nitrate reductase (NapA)
2166	 49.49	0	2392915..2393403	+	162	170081829	eco	ECDH10B_2366	-	ecotin, a serine protease inhibitor
2167	 54.04	0	2394118..2395764	-	548	170081830	mqo	ECDH10B_2367	-	malate dehydrogenase FAD/NAD(P)-binding subunit
2168	 53.41	0	2395982..2397625	-	547	170081831	yojI	ECDH10B_2368	-	multidrug ABC transporter membrane protein/ATP-binding protein
2169	 52.69	0	2397701..2398351	-	216	170081832	alkB	ECDH10B_2369	-	oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions
2170	 56.90	+1	2398351..2399415	-	354	170081833	ada	ECDH10B_2370	-	fused DNA-binding transcriptional dual regulator; O6-methylguanine-DNA methyltransferase
2171	 53.41	0	2399489..2400544	-	351	170081834	yojL	ECDH10B_2371	-	thiamine biosynthesis lipoprotein
2172	 50.63	0	2400656..2401759	-	367	170081835	ompC	ECDH10B_2372	-	outer membrane porin protein C
2173	 49.38	0	2402498..2405170	+	890	170081836	rcsD	ECDH10B_2374	-	phosphotransfer intermediate protein in two-component regulatory system with RcsBC
2174	 47.77	0	2405187..2405837	+	216	170081837	rcsB	ECDH10B_2375	-	DNA-binding response regulator in two-component regulatory system with RcsC and YojN
2175	 50.91	0	2406037..2408886	-	949	170081838	rcsC	ECDH10B_2376	-	hybrid sensory kinase in two-component regulatory system with RcsB and YojN
2176	 48.55	0	2409053..2410879	+	608	170081839	atoS	ECDH10B_2377	-	sensory histidine kinase in two-component regulatory system with AtoC
2177	 48.99	0	2410876..2412261	+	461	170081840	atoC	ECDH10B_2378	-	fused response regulator of ato operon, in two-component system with AtoS: response regulator and sigma 54 interaction protein
2178	 53.85	0	2412457..2413119	+	220	170081841	atoD	ECDH10B_2379	-	acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit
2179	 53.61	0	2413119..2413769	+	216	170081842	atoA	ECDH10B_2380	-	acetyl-CoA:acetoacetyl-CoA transferase, beta subunit
2180	 53.06	0	2413766..2415088	+	440	170081843	atoE	ECDH10B_2381	-	short chain fatty acid transporter
2181	 53.00	0	2415119..2416303	+	394	170081844	atoB	ECDH10B_2382	-	acetyl-CoA acetyltransferase
2182	 52.51	0	2416377..2417153	-	258	170081845	yfaP	ECDH10B_2383	-	hypothetical protein
2183	 54.61	0	2417158..2418807	-	549	170081846	yfaQ	ECDH10B_2384	-	hypothetical protein
2184	 51.44	0	2423346..2423969	-	207	170081847	yfaT	ECDH10B_2388	-	hypothetical protein
2185	 51.15	0	2423966..2425654	-	562	170081848	yfaA	ECDH10B_2389	-	hypothetical protein
2186	 54.00	0	2425803..2428430	-	875	170081849	gyrA	ECDH10B_2390	-	DNA gyrase (type II topoisomerase), subunit A
2187	 54.22	0	2428577..2429299	+	240	170081850	ubiG	ECDH10B_2391	-	bifunctional 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase
2188	 51.37	0	2429427..2433179	-	1250	170081851	yfaL	ECDH10B_2392	-	adhesin
2189	 53.67	0	2433875..2436160	+	761	170081852	nrdA	ECDH10B_2393	-	ribonucleoside diphosphate reductase 1, alpha subunit
2190	 50.57	0	2436394..2437524	+	376	170081853	nrdB	ECDH10B_2394	-	ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein
2191	 56.08	+1	2437524..2437778	+	84	170081854	yfaE	ECDH10B_2395	-	2Fe-2S cluster-containing protein
2192	 49.46	0	2437832..2438482	-	216	170081855	inaA	ECDH10B_2396	-	hypothetical protein
2193	 41.55	-2	2438697..2438903	+	68	170081856	yfaH	ECDH10B_2397	-	hypothetical protein
2194	 45.59	-1	2438945..2440021	-	358	170081857	glpQ	ECDH10B_2398	-	periplasmic glycerophosphodiester phosphodiesterase
2195	 52.61	0	2440026..2441384	-	452	170081858	glpT	ECDH10B_2399	-	sn-glycerol-3-phosphate transporter
2196	 57.34	+1	2441657..2443285	+	542	170081859	glpA	ECDH10B_2400	-	sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)-binding
2197	 55.87	0	2443275..2444534	+	419	170081860	glpB	ECDH10B_2401	-	sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit
2198	 53.99	0	2444531..2445721	+	396	170081861	glpC	ECDH10B_2402	-	sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit
2199	 48.33	0	2445914..2446813	+	299	170081862	yfaD	ECDH10B_2403	-	hypothetical protein
2200	 53.61	0	2447052..2447855	-	267	170081863	yfaU	ECDH10B_2405	-	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
2201	 52.71	0	2447873..2449162	-	429	170081864	yfaV	ECDH10B_2406	-	transporter
2202	 52.05	0	2449219..2450436	-	405	170081865	yfaW	ECDH10B_2407	-	enolase
2203	 50.96	0	2450439..2451221	-	260	170081866	yfaX	ECDH10B_2408	-	DNA-binding transcriptional regulator
2204	 54.20	0	2451441..2452643	-	400	170081867	yfaY	ECDH10B_2409	-	hypothetical protein
2205	 53.22	0	2452743..2453285	-	180	170081868	yfaZ	ECDH10B_2410	-	outer membrane porin protein
2206	 47.65	0	2453564..2453989	+	141	170081869	yfaO	ECDH10B_2411	-	NUDIX hydrolase
2207	 43.28	-1	2454028..2454630	-	200	170081870	ais	ECDH10B_2412	-	hypothetical protein
2208	 51.32	0	2454938..2456077	+	379	170081871	arnB	ECDH10B_2413	-	UDP-4-amino-4-deoxy-L-arabinose alpha-ketoglutarate aminotransferase
2209	 49.85	0	2456081..2457049	+	322	170081872	arnC	ECDH10B_2414	-	undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase
2210	 51.13	0	2457049..2459031	+	660	170081873	arnA	ECDH10B_2415	-	fused UDP-L-Ara4N formyltransferase; UDP-GlcA C-4'-decarboxylase
2211	 52.86	0	2459028..2459918	+	296	170081874	yfbH	ECDH10B_2416	-	hypothetical protein
2212	 51.00	0	2459918..2461570	+	550	170081875	arnT	ECDH10B_2417	-	4-amino-4-deoxy-L-arabinose transferase
2213	 53.57	0	2461567..2461902	+	111	170081876	yfbW	ECDH10B_2418	-	hypothetical protein
2214	 48.58	0	2461902..2462288	+	128	170081877	yfbJ	ECDH10B_2419	-	inner membrane protein
2215	 46.82	0	2462282..2462548	-	88	170081878	pmrD	ECDH10B_2420	-	polymyxin resistance protein B
2216	 56.05	+1	2462658..2464013	-	451	170081879	menE	ECDH10B_2421	-	o-succinylbenzoate-CoA ligase
2217	 58.98	+1	2464010..2464972	-	320	170081880	menC	ECDH10B_2422	-	o-succinylbenzoyl-CoA synthase
2218	 55.59	0	2464972..2465829	-	285	170081881	menB	ECDH10B_2423	-	dihydroxynaphthoic acid synthetase
2219	 56.13	+1	2465844..2466602	-	252	170081882	yfbB	ECDH10B_2424	-	peptidase
2220	 58.11	+1	2466599..2468269	-	556	170081883	menD	ECDH10B_2425	-	bifunctional 2-oxoglutarate decarboxylase and SHCHC synthase
2221	 53.40	0	2468358..2469653	-	431	170081884	menF	ECDH10B_2426	-	isochorismate synthase 2
2222	 51.96	0	2469732..2470037	-	101	170081885	elaB	ECDH10B_2427	-	hypothetical protein
2223	 47.84	0	2470092..2470553	-	153	170081886	elaA	ECDH10B_2428	-	acyltransferase
2224	 35.40	-2	2472500..2473711	+	403	170081887	elaD	ECDH10B_2431	-	hypothetical protein
2225	 45.06	-1	2475647..2476618	+	323	170081888	yfbL	ECDH10B_2433	-	peptidase
2226	 45.63	-1	2476721..2477224	+	167	170081889	yfbM	ECDH10B_2434	-	hypothetical protein
2227	 39.05	-2	2477497..2478213	-	238	170081890	yfbN	ECDH10B_2435	-	hypothetical protein
2228	 38.36	-2	2478368..2478844	+	158	170081891	yfbO	ECDH10B_2436	-	hypothetical protein
2229	 43.43	-1	2478900..2479751	+	283	170081892	yfbP	ECDH10B_2437	-	hypothetical protein
2230	 57.43	+1	2479835..2481112	-	425	170081893	nuoN	ECDH10B_2438	-	NADH:ubiquinone oxidoreductase, membrane subunit N
2231	 54.71	0	2481299..2482828	-	509	170081894	nuoM	ECDH10B_2439	-	NADH:ubiquinone oxidoreductase, membrane subunit M
2232	 57.17	+1	2482992..2484833	-	613	170081895	nuoL	ECDH10B_2440	-	NADH:ubiquinone oxidoreductase, membrane subunit L
2233	 54.79	0	2484830..2485132	-	100	170081896	nuoK	ECDH10B_2441	-	NADH:ubiquinone oxidoreductase, membrane subunit K
2234	 53.87	0	2485129..2485683	-	184	170081897	nuoJ	ECDH10B_2442	-	NADH:ubiquinone oxidoreductase, membrane subunit J
2235	 54.33	0	2485695..2486237	-	180	170081898	nuoI	ECDH10B_2443	-	NADH:ubiquinone oxidoreductase, chain I
2236	 54.19	0	2486252..2487229	-	325	170081899	nuoH	ECDH10B_2444	-	NADH:ubiquinone oxidoreductase, membrane subunit H
2237	 56.35	+1	2487226..2489958	-	910	170081900	nuoG	ECDH10B_2445	-	NADH:ubiquinone oxidoreductase, chain G
2238	 56.20	+1	2490005..2491342	-	445	170081901	nuoF	ECDH10B_2446	-	NADH:ubiquinone oxidoreductase, chain F
2239	 55.29	0	2491339..2491839	-	166	170081902	nuoE	ECDH10B_2447	-	NADH:ubiquinone oxidoreductase, chain E
2240	 55.74	0	2491842..2493644	-	600