IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2095	 53.57	0	2314074..2314661	-	195	170081758	yohC	ECDH10B_2291	-	inner membrane protein
2096	 54.40	0	2314831..2315409	+	192	170081759	yohD	ECDH10B_2292	-	inner membrane protein
2097	 55.12	0	2315539..2316300	-	253	170081760	yohF	ECDH10B_2293	-	oxidoreductase
2098	 55.74	0	2316353..2317441	-	362	170081761	yohG	ECDH10B_2294	-	outer membrane protein
2099	 52.90	0	2317579..2317716	-	45	170081762	yohH	ECDH10B_2296	-	hypothetical protein
2100	 54.22	0	2318468..2319415	-	315	170081763	dusC	ECDH10B_2297	-	tRNA-dihydrouridine synthase C
2101	 49.37	0	2319654..2320052	+	132	170081764	yohJ	ECDH10B_2298	-	inner membrane protein
2102	 53.45	0	2320049..2320744	+	231	170081765	yohK	ECDH10B_2299	-	inner membrane protein
2103	 54.69	0	2320874..2321758	+	294	170081766	cdd	ECDH10B_2300	-	cytidine/deoxycytidine deaminase
2104	 47.78	0	2321908..2322627	+	239	170081767	sanA	ECDH10B_2301	-	hypothetical protein
2105	 42.92	-1	2322630..2322869	+	79	170081768	yeiS	ECDH10B_2302	-	inner membrane protein
2106	 51.49	0	2323063..2324301	+	412	170081769	yeiT	ECDH10B_2303	-	oxidoreductase
2107	 51.05	0	2324295..2325530	+	411	170081770	yeiA	ECDH10B_2304	-	oxidoreductase
2108	 50.25	0	2325773..2326783	-	336	170081771	mglC	ECDH10B_2305	-	methyl-galactoside ABC transporter membrane protein
2109	 51.05	0	2328361..2329359	-	332	170081772	mglB	ECDH10B_2307	-	methyl-galactoside ABC transporter periplasmic substrate-binding protein
2110	 52.45	0	2329639..2330679	-	346	170081773	galS	ECDH10B_2308	-	DNA-binding transcriptional repressor
2111	 54.40	0	2330821..2331978	-	385	170081774	yeiB	ECDH10B_2309	-	inner membrane protein
2112	 51.27	0	2331995..2332663	-	222	170081775	folE	ECDH10B_2310	-	GTP cyclohydrolase I
2113	 54.48	0	2332921..2333757	+	278	170081776	yeiG	ECDH10B_2311	-	esterase
2114	 52.76	0	2333789..2335780	-	663	170081777	cirA	ECDH10B_2312	-	ferric iron-catecholate outer membrane transporter
2115	 53.47	0	2336074..2337543	-	489	170081778	lysP	ECDH10B_2313	-	lysine transporter
2116	 53.74	0	2337748..2338629	-	293	170081779	yeiE	ECDH10B_2314	-	DNA-binding transcriptional regulator
2117	 53.05	0	2338728..2339777	+	349	170081780	yeiH	ECDH10B_2315	-	inner membrane protein
2118	 52.45	0	2339851..2340708	+	285	170081781	nfo	ECDH10B_2316	-	endonuclease IV with intrinsic 3'-5' exonuclease activity
2119	 51.79	0	2340711..2341799	+	362	170081782	yeiI	ECDH10B_2317	-	kinase
2120	 50.44	0	2341906..2343156	-	416	170081783	yeiJ	ECDH10B_2318	-	nucleoside transporter
2121	 52.02	0	2343256..2344197	-	313	170081784	rihB	ECDH10B_2319	-	ribonucleoside hydrolase 2
2122	 45.00	-1	2344366..2345025	+	219	170081785	yeiL	ECDH10B_2320	-	DNA-binding transcriptional activator of stationary phase nitrogen survival
2123	 51.08	0	2345096..2346346	-	416	170081786	yeiM	ECDH10B_2321	-	nucleoside transporter
2124	 49.73	0	2346440..2347378	-	312	170081787	yeiN	ECDH10B_2322	-	hypothetical protein
2125	 47.03	0	2347366..2348307	-	313	170081788	yeiC	ECDH10B_2323	-	kinase
2126	 55.73	0	2348730..2350421	-	563	170081789	fruA	ECDH10B_2324	-	fused fructose-specific PTS enzymes: iibcomponent; IIC components
2127	 53.46	0	2350438..2351376	-	312	170081790	fruK	ECDH10B_2325	-	fructose-1-phosphate kinase
2128	 53.05	0	2352873..2354054	+	393	170081791	setB	ECDH10B_2327	-	lactose/glucose efflux system
2129	 55.69	0	2354051..2354305	-	84	170081792	yeiW	ECDH10B_2328	-	hypothetical protein
2130	 49.91	0	2354460..2355032	+	190	170081793	yeiP	ECDH10B_2329	-	elongtion factor
2131	 52.01	0	2355255..2356721	+	488	170081794	yeiQ	ECDH10B_2330	-	dehydrogenase, NAD-dependent
2132	 54.51	0	2356839..2357825	+	328	170081795	yeiR	ECDH10B_2331	-	hypothetical protein
2133	 44.12	-1	2357864..2358577	+	237	170081796	yeiU	ECDH10B_2332	-	undecaprenyl pyrophosphate phosphatase
2134	 46.74	0	2358989..2359555	+	188	170081797	spr	ECDH10B_2333	-	peptidase, outer membrane lipoprotein
2135	 50.55	0	2359736..2361292	+	518	170081798	rtn	ECDH10B_2334	-	EAL domain-containing protein
2136	 51.18	0	2361374..2363188	+	604	170081799	yejA	ECDH10B_2335	-	oligopeptide ABC transporter periplasmic-binding protein
2137	 51.23	0	2363189..2364283	+	364	170081800	yejB	ECDH10B_2336	-	oligopeptide ABC transporter membrane protein
2138	 52.73	0	2364283..2365308	+	341	170081801	yejE	ECDH10B_2337	-	oligopeptide ABC transporter membrane protein
2139	 51.38	0	2365310..2366899	+	529	170081802	yejF	ECDH10B_2338	-	fused oligopeptide transporter subunits of ABC superfamilly: ATP-binding components
2140	 48.70	0	2366903..2367247	-	114	170081803	yejG	ECDH10B_2339	-	hypothetical protein
2141	 53.32	0	2367580..2368770	-	396	170081804	bcr	ECDH10B_2340	-	bicyclomycin/multidrug efflux system
2142	 52.87	0	2368798..2369493	-	231	170081805	rsuA	ECDH10B_2341	-	16S rRNA pseudouridylate 516 synthase
2143	 53.15	0	2369642..2371402	+	586	170081806	yejH	ECDH10B_2342	-	ATP-dependet helicase
2144	 50.53	0	2371527..2371811	+	94	170081807	rplY	ECDH10B_2343	-	50S ribosomal subunit protein L25
2145	 52.28	0	2371950..2372957	-	335	170081808	yejK	ECDH10B_2344	-	nucleotide associated protein
2146	 50.44	0	2373139..2373366	+	75	170081809	yejL	ECDH10B_2345	-	hypothetical protein
2147	 52.07	0	2373386..2375146	+	586	170081810	yejM	ECDH10B_2346	-	hydrolase, inner membrane
2148	 48.35	0	2375400..2377910	-	836	170081811	yejO	ECDH10B_2348	-	autotransporter outer membrane protein
2149	 54.67	0	2378075..2379091	-	338	170081812	insH-8	ECDH10B_2349	-	IS5 transposase and trans-activator
2150	 52.47	0	2379510..2380157	+	215	170081813	narP	ECDH10B_2350	-	DNA-binding response regulator in two-component regulatory system with NarQ or NarX
2151	 54.04	0	2380368..2381420	-	350	170081814	ccmH	ECDH10B_2351	-	heme lyase, CcmH subunit
2152	 54.48	0	2381417..2381974	-	185	170081815	ccmG	ECDH10B_2352	-	periplasmic thioredoxin of cytochrome c-type biogenesis
2153	 57.10	+1	2381971..2383914	-	647	170081816	ccmF	ECDH10B_2353	-	heme lyase, CcmF subunit
2154	 53.54	0	2383911..2384390	-	159	170081817	ccmE	ECDH10B_2354	-	periplasmic heme chaperone
2155	 57.14	+1	2384387..2384596	-	69	170081818	ccmD	ECDH10B_2355	-	cytochrome c biogenesis protein
2156	 55.28	0	2384593..2385330	-	245	170081819	ccmC	ECDH10B_2356	-	heme ABC transporter membrane protein
2157	 55.96	+1	2385372..2386034	-	220	170081820	ccmB	ECDH10B_2357	-	heme ABC transporter membrane protein
2158	 55.93	+1	2386031..2386654	-	207	170081821	ccmA	ECDH10B_2358	-	heme ABC transporter ATP-binding protein
2159	 51.58	0	2386667..2387269	-	200	170081822	napC	ECDH10B_2359	-	nitrate reductase, cytochrome c-type,periplasmic
2160	 55.56	0	2387279..2387728	-	149	170081823	napB	ECDH10B_2360	-	nitrate reductase, small, cytochrome C550 subunit, periplasmic
2161	 55.90	+1	2387725..2388588	-	287	170081824	napH	ECDH10B_2361	-	ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)
2162	 59.05	+1	2388575..2389270	-	231	170081825	napG	ECDH10B_2362	-	ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)
2163	 56.13	+1	2389277..2391763	-	828	170081826	napA	ECDH10B_2363	-	nitrate reductase, periplasmic, large subunit
2164	 54.55	0	2391760..2392023	-	87	170081827	napD	ECDH10B_2364	-	assembly protein for periplasmic nitrate reductase
2165	 55.35	0	2392013..2392507	-	164	170081828	napF	ECDH10B_2365	-	ferredoxin-type protein, role in electron transfer to periplasmic nitrate reductase (NapA)
2166	 49.49	0	2392915..2393403	+	162	170081829	eco	ECDH10B_2366	-	ecotin, a serine protease inhibitor
2167	 54.04	0	2394118..2395764	-	548	170081830	mqo	ECDH10B_2367	-	malate dehydrogenase FAD/NAD(P)-binding subunit
2168	 53.41	0	2395982..2397625	-	547	170081831	yojI	ECDH10B_2368	-	multidrug ABC transporter membrane protein/ATP-binding protein
2169	 52.69	0	2397701..2398351	-	216	170081832	alkB	ECDH10B_2369	-	oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions
2170	 56.90	+1	2398351..2399415	-	354	170081833	ada	ECDH10B_2370	-	fused DNA-binding transcriptional dual regulator; O6-methylguanine-DNA methyltransferase
2171	 53.41	0	2399489..2400544	-	351	170081834	yojL	ECDH10B_2371	-	thiamine biosynthesis lipoprotein
2172	 50.63	0	2400656..2401759	-	367	170081835	ompC	ECDH10B_2372	-	outer membrane porin protein C
2173	 49.38	0	2402498..2405170	+	890	170081836	rcsD	ECDH10B_2374	-	phosphotransfer intermediate protein in two-component regulatory system with RcsBC
2174	 47.77	0	2405187..2405837	+	216	170081837	rcsB	ECDH10B_2375	-	DNA-binding response regulator in two-component regulatory system with RcsC and YojN
2175	 50.91	0	2406037..2408886	-	949	170081838	rcsC	ECDH10B_2376	-	hybrid sensory kinase in two-component regulatory system with RcsB and YojN
2176	 48.55	0	2409053..2410879	+	608	170081839	atoS	ECDH10B_2377	-	sensory histidine kinase in two-component regulatory system with AtoC
2177	 48.99	0	2410876..2412261	+	461	170081840	atoC	ECDH10B_2378	-	fused response regulator of ato operon, in two-component system with AtoS: response regulator and sigma 54 interaction protein
2178	 53.85	0	2412457..2413119	+	220	170081841	atoD	ECDH10B_2379	-	acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit
2179	 53.61	0	2413119..2413769	+	216	170081842	atoA	ECDH10B_2380	-	acetyl-CoA:acetoacetyl-CoA transferase, beta subunit
2180	 53.06	0	2413766..2415088	+	440	170081843	atoE	ECDH10B_2381	-	short chain fatty acid transporter
2181	 53.00	0	2415119..2416303	+	394	170081844	atoB	ECDH10B_2382	-	acetyl-CoA acetyltransferase
2182	 52.51	0	2416377..2417153	-	258	170081845	yfaP	ECDH10B_2383	-	hypothetical protein
2183	 54.61	0	2417158..2418807	-	549	170081846	yfaQ	ECDH10B_2384	-	hypothetical protein
2184	 51.44	0	2423346..2423969	-	207	170081847	yfaT	ECDH10B_2388	-	hypothetical protein
2185	 51.15	0	2423966..2425654	-	562	170081848	yfaA	ECDH10B_2389	-	hypothetical protein
2186	 54.00	0	2425803..2428430	-	875