IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.13   STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
165	 54.14	0	188937..189359	+	140	170079828	yaeJ	ECDH10B_0172	-	hypothetical protein
166	 52.32	0	189373..190083	+	236	170079829	nlpE	ECDH10B_0173	-	lipoprotein involved with copper homeostasis and adhesion
167	 49.33	0	190283..191107	-	274	170079830	yaeF	ECDH10B_0174	-	lipoprotein
168	 54.51	0	191161..192879	-	572	170079831	proS	ECDH10B_0175	-	prolyl-tRNA synthetase
169	 55.23	0	192991..193698	-	235	170079832	yaeB	ECDH10B_0176	-	hypothetical protein
170	 53.33	0	193695..194099	-	134	170079833	rcsF	ECDH10B_0177	-	outer membrane protein, signal
171	 49.14	0	194217..195032	-	271	170079834	metQ	ECDH10B_0178	-	receptor component of DL-methionine uptake transporter (MUT)
172	 52.29	0	195072..195725	-	217	170079835	metI	ECDH10B_0179	-	membrane component of DL-methionine uptake transporter (MUT)
173	 52.91	0	195718..196749	-	343	170079836	metN	ECDH10B_0180	-	ATP-binding component of DL-methionine uptake transporter (MUT)
174	 50.17	0	196937..197512	+	191	170079837	gmhB	ECDH10B_0181	-	D,D-heptose 1,7-bisphosphate phosphatase
175	 46.27	-1	203271..204074	+	267	170079838	dkgB	ECDH10B_0188	-	2,5-diketo-D-gluconate reductase B
176	 49.62	0	204071..204985	-	304	170079839	yafC	ECDH10B_0189	-	DNA-binding transcriptional regulator
177	 52.68	0	205226..206026	+	266	170079840	yafD	ECDH10B_0190	-	hypothetical protein
178	 49.04	0	206030..206653	+	207	170079841	yafE	ECDH10B_0191	-	S-adenosyl-L-methionine-dependent methyltransferase
179	 51.95	0	206701..208059	-	452	170079842	mltD	ECDH10B_0192	-	membrane-bound lytic murein transglycosylase D
180	 40.21	-2	208131..208886	-	251	170079843	gloB	ECDH10B_0193	-	hydroxyacylglutathione hydrolase
181	 49.38	0	208920..209642	+	240	170079844	yafS	ECDH10B_0194	-	S-adenosyl-L-methionine-dependent methyltransferase
182	 50.43	0	209639..210106	-	155	170079845	rnhA	ECDH10B_0195	-	ribonuclease HI, degrades RNA of DNA-RNA hybrids
183	 50.14	0	210171..210902	+	243	170079846	dnaQ	ECDH10B_0196	-	DNA polymerase III epsilon subunit
184	 42.75	-1	211439..212224	+	261	170079847	yafT	ECDH10B_0198	-	aminopeptidase
185	 54.73	0	213523..214293	-	256	170079848	yafV	ECDH10B_0201	-	C-N hydrolase family amidase, NAD(P)-binding
186	 50.00	0	214447..214920	+	157	170079849	ivy	ECDH10B_0202	-	inhibitor of vertebrate C-lysozyme
187	 56.89	+1	214963..217407	-	814	170079850	fadE	ECDH10B_0203	-	acyl coenzyme A dehydrogenase
188	 50.95	0	217647..218225	+	192	170079851	lpcA	ECDH10B_0204	-	D-sedoheptulose 7-phosphate isomerase
189	 53.65	0	218431..219198	+	255	170079852	yafJ	ECDH10B_0205	-	amidotransfease
190	 48.45	0	219169..219909	-	246	170079853	yafK	ECDH10B_0206	-	hypothetical protein
191	 39.43	-2	220065..220343	-	92	170079854	yafQ	ECDH10B_0207	-	toxin of the YafQ-DinJ toxin-antitoxin system
192	 46.74	0	220346..220606	-	86	170079855	dinJ	ECDH10B_0208	-	antitoxin of YafQ-DinJ toxin-antitoxin system
193	 52.27	0	220816..221565	+	249	170079856	yafL	ECDH10B_0209	-	C40 family peptidase
194	 44.78	-1	221741..222238	+	165	170079857	yafM	ECDH10B_0210	-	hypothetical protein
195	 54.17	0	225002..226057	+	351	170079858	dinB	ECDH10B_0213	-	DNA polymerase IV
196	 42.18	-1	226109..226402	+	97	170079859	yafN	ECDH10B_0214	-	antitoxin of the YafO-YafN toxin-antitoxin system
197	 43.61	-1	226405..226803	+	132	170079860	yafO	ECDH10B_0215	-	toxin of the YafO-YafN toxin-antitoxin system
198	 43.27	-1	226813..227265	+	150	170079861	yafP	ECDH10B_0216	-	acyltransferase
199	 51.37	0	228363..229820	-	485	170079862	pepD	ECDH10B_0219	-	aminoacyl-histidine dipeptidase (peptidase D)
200	 51.85	0	230081..230539	+	152	170079863	gpt	ECDH10B_0220	-	guanine-xanthine phosphoribosyltransferase
201	 53.65	0	230631..231875	+	414	170079864	frsA	ECDH10B_0221	-	fermentation/respiration switch protein
202	 50.50	0	231933..232334	+	133	170079865	crl	ECDH10B_0222	-	DNA-binding transcriptional regulator
203	 44.70	-1	232373..233428	-	351	170079866	phoE	ECDH10B_0223	-	outer membrane phosphoporin protein E
204	 56.25	+1	233716..234819	+	367	170079867	proB	ECDH10B_0224	-	gamma-glutamate kinase
205	 54.31	0	234831..236084	+	417	170079868	proA	ECDH10B_0225	-	gamma-glutamylphosphate reductase
206	 51.17	0	236656..236997	-	113	170079869	ykfI	ECDH10B_0227	-	CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system
207	 56.92	+1	237018..237335	-	105	170079870	yafW	ECDH10B_0228	-	CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system
208	 55.86	0	237354..237575	-	73	170079871	ykfH	ECDH10B_0229	-	hypothetical protein
209	 58.49	+1	237584..238060	-	158	170079872	ykfG	ECDH10B_0230	-	CP4-6 prophage; DNA repair protein
210	 55.56	0	238076..238534	-	152	170079873	yafX	ECDH10B_0231	-	CP4-6 prophage; hypothetical protein
211	 58.75	+1	238632..238871	-	79	170079874	ykfF	ECDH10B_0232	-	CP4-6 prophage; hypothetical protein
212	 52.56	0	238948..239415	-	155	170079875	ykfB	ECDH10B_0233	-	CP4-6 prophage; hypothetical protein
213	 50.68	0	239438..239881	-	147	170079876	yafY	ECDH10B_0234	-	CP4-6 prophage; inner membrane lipoprotein
214	 57.79	+1	240512..241333	-	273	170079877	yafZ	ECDH10B_0237	-	CP4-6 prophage; hypothetical protein
215	 56.83	+1	241425..242288	-	287	170079878	ykfA	ECDH10B_0238	-	CP4-6 prophage; GTP-binding protein
216	 47.99	0	242617..243510	-	297	170079879	perR	ECDH10B_0239	-	CP4-6 prophage; DNA-binding transcriptional regulator
217	 43.70	-1	243570..243974	+	134	170079880	insN-1	ECDH10B_0240	-	CP4-6 prophage; partial regulator of insertion element IS911A
218	 45.83	-1	243931..245082	+	383	170079881	insI-1	ECDH10B_0241	-	CP4-6 prophage; IS30 transposase
219	 55.63	0	245158..245583	+	141	170079882	insO-1	ECDH10B_0243	-	CP4-6 prophage; partial transposase of insertion element IS911A
220	 54.67	0	247429..248445	-	338	170079883	insH-1	ECDH10B_0245	-	CP4-6 prophage; IS5 transposase and trans-activator
221	 54.84	0	248653..250056	+	467	170079884	mmuP	ECDH10B_0246	-	CP4-6 prophage; S-methylmethionine transporter
222	 60.34	+1	250043..250975	+	310	170079885	mmuM	ECDH10B_0247	-	CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase
223	 56.35	+1	251084..252130	-	348	170079886	afuC	ECDH10B_0248	-	CP4-6 prophage; ferric ABC transporter ATP-binding protein
224	 55.92	+1	252142..252504	-	120	170079887	afuB	ECDH10B_0249	-	CP4-6 prophage; ferric ABC transporter membrane protein
225	 55.16	0	252506..253009	-	167	170079888	insB-2	ECDH10B_0250	-	CP4-6 prophage; IS1 transposase InsAB'
226	 53.26	0	252928..253203	-	91	170079889	insA-2	ECDH10B_0251	-	CP4-6 prophage; IS1 repressor protein InsA
227	 45.13	-1	253352..253690	-	112	170079890	ykgN	ECDH10B_0252	-	IS protein
228	 51.00	0	253713..254063	-	116	170079891	yagB	ECDH10B_0253	-	CP4-6 prophage; hypothetical protein
229	 62.08	+2	254157..255311	-	384	170079892	yagA	ECDH10B_0254	-	CP4-6 prophage; DNA-binding transcriptional regulator
230	 61.18	+2	255585..256514	+	309	170079893	yagE	ECDH10B_0255	-	CP4-6 prophage; lyase/synthase
231	 66.77	+2	256529..258496	+	655	170079894	yagF	ECDH10B_0256	-	CP4-6 prophage; dehydratase
232	 62.47	+2	258723..260105	+	460	170079895	yagG	ECDH10B_0257	-	CP4-6 prophage; sugar transporter
233	 64.37	+2	260117..261727	+	536	170079896	yagH	ECDH10B_0258	-	CP4-6 prophage; xylosidase/arabinosidase
234	 58.81	+1	264075..265079	-	334	170079897	argF	ECDH10B_0261	-	CP4-6 prophage; ornithine carbamoyltransferase 2, chain F
235	 55.16	0	265423..265926	-	167	170079898	insB-3	ECDH10B_0262	-	CP4-6 prophage; IS1 transposase InsAB'
236	 53.26	0	265845..266120	-	91	170079899	insA-3	ECDH10B_0263	-	CP4-6 prophage; IS1 repressor protein InsA
237	 48.91	0	266274..267005	+	243	170079900	yagJ	ECDH10B_0264	-	CP4-6 prophage; hypothetical protein
238	 44.82	-1	267096..267722	-	208	170079901	yagK	ECDH10B_0265	-	CP4-6 prophage; hypothetical protein
239	 37.34	-2	267994..268692	-	232	170079902	yagL	ECDH10B_0266	-	CP4-6 prophage; DNA-binding protein
240	 36.26	-2	268719..269573	-	284	170079903	yagM	ECDH10B_0267	-	CP4-6 prophage; hypothetical protein
241	 43.54	-1	269913..270353	-	146	170079904	yagN	ECDH10B_0268	-	CP4-6 prophage; hypothetical protein
242	 44.33	-1	270470..271870	-	466	170079905	intF	ECDH10B_0269	-	CP4-6 prophage; phage integrase
243	 52.55	0	272155..272565	-	136	170079906	yagP	ECDH10B_0270	-	transcriptional regulator
244	 59.98	+1	272544..273500	-	318	170079907	yagQ	ECDH10B_0271	-	hypothetical protein
245	 59.44	+1	273510..275708	-	732	170079908	yagR	ECDH10B_0272	-	oxidoreductase
246	 60.71	+2	275705..276661	-	318	170079909	yagS	ECDH10B_0273	-	oxidoreductase
247	 54.78	0	276658..277347	-	229	170079910	yagT	ECDH10B_0274	-	xanthine dehydrogenase, 2Fe-2S subunit
248	 45.20	-1	277765..278379	+	204	170079911	yagU	ECDH10B_0275	-	inner membrane protein
249	 50.30	0	278627..278956	-	109	170079912	ykgJ	ECDH10B_0276	-	ferredoxin
250	 53.02	0	279269..279979	-	236	170079913	yagV	ECDH10B_0277	-	hypothetical protein
251	 51.58	0	279948..281591	-	547	170079914	yagW	ECDH10B_0278	-	receptor
252	 55.27	0	281581..284106	-	841	170079915	yagX	ECDH10B_0279	-	aromatic compound dioxygenase
253	 54.86	0	284132..284800	-	222	170079916	matC	ECDH10B_0280	-	hypothetical protein
254	 52.89	0	284858..285445	-	195	170079917	matB	ECDH10B_0281	-	MAT fimbrillin
255	 39.09	-2	285520..286110	-	196	170079918	matA	ECDH10B_0282	-	regulator
256	 43.86	-1	286886..287113	+	75	170079919	ykgL	ECDH10B_0283	-	hypothetical protein
257	 41.84	-1	287148..287288	-	46	170079920	ykgO	ECDH10B_0284	-	rpmJ (L36) paralog
258	 45.83	-1	287288..287551	-	87	170079921	ykgM	ECDH10B_0285	-	rpmE (L31) paralog
259