version 1.0
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137 4126 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 160 50.51 0 185981..186370 + 129 170079823 yaeR ECDH10B_0167 - lyase 161 58.04 +1 186435..187733 + 432 170079824 tilS ECDH10B_0168 - tRNA(Ile)-lysidine synthetase 162 47.84 0 187782..188036 - 84 170079825 rof ECDH10B_0169 - modulator of Rho-dependent transcription termination 163 50.75 0 188029..188229 - 66 170079826 yaeP ECDH10B_0170 - hypothetical protein 164 52.38 0 188395..188940 + 181 170079827 yaeQ ECDH10B_0171 - hypothetical protein 165 54.14 0 188937..189359 + 140 170079828 yaeJ ECDH10B_0172 - hypothetical protein 166 52.32 0 189373..190083 + 236 170079829 nlpE ECDH10B_0173 - lipoprotein involved with copper homeostasis and adhesion 167 49.33 0 190283..191107 - 274 170079830 yaeF ECDH10B_0174 - lipoprotein 168 54.51 0 191161..192879 - 572 170079831 proS ECDH10B_0175 - prolyl-tRNA synthetase 169 55.23 0 192991..193698 - 235 170079832 yaeB ECDH10B_0176 - hypothetical protein 170 53.33 0 193695..194099 - 134 170079833 rcsF ECDH10B_0177 - outer membrane protein, signal 171 49.14 0 194217..195032 - 271 170079834 metQ ECDH10B_0178 - receptor component of DL-methionine uptake transporter (MUT) 172 52.29 0 195072..195725 - 217 170079835 metI ECDH10B_0179 - membrane component of DL-methionine uptake transporter (MUT) 173 52.91 0 195718..196749 - 343 170079836 metN ECDH10B_0180 - ATP-binding component of DL-methionine uptake transporter (MUT) 174 50.17 0 196937..197512 + 191 170079837 gmhB ECDH10B_0181 - D,D-heptose 1,7-bisphosphate phosphatase 175 46.27 -1 203271..204074 + 267 170079838 dkgB ECDH10B_0188 - 2,5-diketo-D-gluconate reductase B 176 49.62 0 204071..204985 - 304 170079839 yafC ECDH10B_0189 - DNA-binding transcriptional regulator 177 52.68 0 205226..206026 + 266 170079840 yafD ECDH10B_0190 - hypothetical protein 178 49.04 0 206030..206653 + 207 170079841 yafE ECDH10B_0191 - S-adenosyl-L-methionine-dependent methyltransferase 179 51.95 0 206701..208059 - 452 170079842 mltD ECDH10B_0192 - membrane-bound lytic murein transglycosylase D 180 40.21 -2 208131..208886 - 251 170079843 gloB ECDH10B_0193 - hydroxyacylglutathione hydrolase 181 49.38 0 208920..209642 + 240 170079844 yafS ECDH10B_0194 - S-adenosyl-L-methionine-dependent methyltransferase 182 50.43 0 209639..210106 - 155 170079845 rnhA ECDH10B_0195 - ribonuclease HI, degrades RNA of DNA-RNA hybrids 183 50.14 0 210171..210902 + 243 170079846 dnaQ ECDH10B_0196 - DNA polymerase III epsilon subunit 184 42.75 -1 211439..212224 + 261 170079847 yafT ECDH10B_0198 - aminopeptidase 185 54.73 0 213523..214293 - 256 170079848 yafV ECDH10B_0201 - C-N hydrolase family amidase, NAD(P)-binding 186 50.00 0 214447..214920 + 157 170079849 ivy ECDH10B_0202 - inhibitor of vertebrate C-lysozyme 187 56.89 +1 214963..217407 - 814 170079850 fadE ECDH10B_0203 - acyl coenzyme A dehydrogenase 188 50.95 0 217647..218225 + 192 170079851 lpcA ECDH10B_0204 - D-sedoheptulose 7-phosphate isomerase 189 53.65 0 218431..219198 + 255 170079852 yafJ ECDH10B_0205 - amidotransfease 190 48.45 0 219169..219909 - 246 170079853 yafK ECDH10B_0206 - hypothetical protein 191 39.43 -2 220065..220343 - 92 170079854 yafQ ECDH10B_0207 - toxin of the YafQ-DinJ toxin-antitoxin system 192 46.74 0 220346..220606 - 86 170079855 dinJ ECDH10B_0208 - antitoxin of YafQ-DinJ toxin-antitoxin system 193 52.27 0 220816..221565 + 249 170079856 yafL ECDH10B_0209 - C40 family peptidase 194 44.78 -1 221741..222238 + 165 170079857 yafM ECDH10B_0210 - hypothetical protein 195 54.17 0 225002..226057 + 351 170079858 dinB ECDH10B_0213 - DNA polymerase IV 196 42.18 -1 226109..226402 + 97 170079859 yafN ECDH10B_0214 - antitoxin of the YafO-YafN toxin-antitoxin system 197 43.61 -1 226405..226803 + 132 170079860 yafO ECDH10B_0215 - toxin of the YafO-YafN toxin-antitoxin system 198 43.27 -1 226813..227265 + 150 170079861 yafP ECDH10B_0216 - acyltransferase 199 51.37 0 228363..229820 - 485 170079862 pepD ECDH10B_0219 - aminoacyl-histidine dipeptidase (peptidase D) 200 51.85 0 230081..230539 + 152 170079863 gpt ECDH10B_0220 - guanine-xanthine phosphoribosyltransferase 201 53.65 0 230631..231875 + 414 170079864 frsA ECDH10B_0221 - fermentation/respiration switch protein 202 50.50 0 231933..232334 + 133 170079865 crl ECDH10B_0222 - DNA-binding transcriptional regulator 203 44.70 -1 232373..233428 - 351 170079866 phoE ECDH10B_0223 - outer membrane phosphoporin protein E 204 56.25 +1 233716..234819 + 367 170079867 proB ECDH10B_0224 - gamma-glutamate kinase 205 54.31 0 234831..236084 + 417 170079868 proA ECDH10B_0225 - gamma-glutamylphosphate reductase 206 51.17 0 236656..236997 - 113 170079869 ykfI ECDH10B_0227 - CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system 207 56.92 +1 237018..237335 - 105 170079870 yafW ECDH10B_0228 - CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system 208 55.86 0 237354..237575 - 73 170079871 ykfH ECDH10B_0229 - hypothetical protein 209 58.49 +1 237584..238060 - 158 170079872 ykfG ECDH10B_0230 - CP4-6 prophage; DNA repair protein 210 55.56 0 238076..238534 - 152 170079873 yafX ECDH10B_0231 - CP4-6 prophage; hypothetical protein 211 58.75 +1 238632..238871 - 79 170079874 ykfF ECDH10B_0232 - CP4-6 prophage; hypothetical protein 212 52.56 0 238948..239415 - 155 170079875 ykfB ECDH10B_0233 - CP4-6 prophage; hypothetical protein 213 50.68 0 239438..239881 - 147 170079876 yafY ECDH10B_0234 - CP4-6 prophage; inner membrane lipoprotein 214 57.79 +1 240512..241333 - 273 170079877 yafZ ECDH10B_0237 - CP4-6 prophage; hypothetical protein 215 56.83 +1 241425..242288 - 287 170079878 ykfA ECDH10B_0238 - CP4-6 prophage; GTP-binding protein 216 47.99 0 242617..243510 - 297 170079879 perR ECDH10B_0239 - CP4-6 prophage; DNA-binding transcriptional regulator 217 43.70 -1 243570..243974 + 134 170079880 insN-1 ECDH10B_0240 - CP4-6 prophage; partial regulator of insertion element IS911A 218 45.83 -1 243931..245082 + 383 170079881 insI-1 ECDH10B_0241 - CP4-6 prophage; IS30 transposase 219 55.63 0 245158..245583 + 141 170079882 insO-1 ECDH10B_0243 - CP4-6 prophage; partial transposase of insertion element IS911A 220 54.67 0 247429..248445 - 338 170079883 insH-1 ECDH10B_0245 - CP4-6 prophage; IS5 transposase and trans-activator 221 54.84 0 248653..250056 + 467 170079884 mmuP ECDH10B_0246 - CP4-6 prophage; S-methylmethionine transporter 222 60.34 +1 250043..250975 + 310 170079885 mmuM ECDH10B_0247 - CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase 223 56.35 +1 251084..252130 - 348 170079886 afuC ECDH10B_0248 - CP4-6 prophage; ferric ABC transporter ATP-binding protein 224 55.92 +1 252142..252504 - 120 170079887 afuB ECDH10B_0249 - CP4-6 prophage; ferric ABC transporter membrane protein 225 55.16 0 252506..253009 - 167 170079888 insB-2 ECDH10B_0250 - CP4-6 prophage; IS1 transposase InsAB' 226 53.26 0 252928..253203 - 91 170079889 insA-2 ECDH10B_0251 - CP4-6 prophage; IS1 repressor protein InsA 227 45.13 -1 253352..253690 - 112 170079890 ykgN ECDH10B_0252 - IS protein 228 51.00 0 253713..254063 - 116 170079891 yagB ECDH10B_0253 - CP4-6 prophage; hypothetical protein 229 62.08 +2 254157..255311 - 384 170079892 yagA ECDH10B_0254 - CP4-6 prophage; DNA-binding transcriptional regulator 230 61.18 +2 255585..256514 + 309 170079893 yagE ECDH10B_0255 - CP4-6 prophage; lyase/synthase 231 66.77 +2 256529..258496 + 655 170079894 yagF ECDH10B_0256 - CP4-6 prophage; dehydratase 232 62.47 +2 258723..260105 + 460 170079895 yagG ECDH10B_0257 - CP4-6 prophage; sugar transporter 233 64.37 +2 260117..261727 + 536 170079896 yagH ECDH10B_0258 - CP4-6 prophage; xylosidase/arabinosidase 234 58.81 +1 264075..265079 - 334 170079897 argF ECDH10B_0261 - CP4-6 prophage; ornithine carbamoyltransferase 2, chain F 235 55.16 0 265423..265926 - 167 170079898 insB-3 ECDH10B_0262 - CP4-6 prophage; IS1 transposase InsAB' 236 53.26 0 265845..266120 - 91 170079899 insA-3 ECDH10B_0263 - CP4-6 prophage; IS1 repressor protein InsA 237 48.91 0 266274..267005 + 243 170079900 yagJ ECDH10B_0264 - CP4-6 prophage; hypothetical protein 238 44.82 -1 267096..267722 - 208 170079901 yagK ECDH10B_0265 - CP4-6 prophage; hypothetical protein 239 37.34 -2 267994..268692 - 232 170079902 yagL ECDH10B_0266 - CP4-6 prophage; DNA-binding protein 240 36.26 -2 268719..269573 - 284 170079903 yagM ECDH10B_0267 - CP4-6 prophage; hypothetical protein 241 43.54 -1 269913..270353 - 146 170079904 yagN ECDH10B_0268 - CP4-6 prophage; hypothetical protein 242 44.33 -1 270470..271870 - 466 170079905 intF ECDH10B_0269 - CP4-6 prophage; phage integrase 243 52.55 0 272155..272565 - 136 170079906 yagP ECDH10B_0270 - transcriptional regulator 244 59.98 +1 272544..273500 - 318 170079907 yagQ ECDH10B_0271 - hypothetical protein 245 59.44 +1 273510..275708 - 732 170079908 yagR ECDH10B_0272 - oxidoreductase 246 60.71 +2 275705..276661 - 318 170079909 yagS ECDH10B_0273 - oxidoreductase 247 54.78 0 276658..277347 - 229 170079910 yagT ECDH10B_0274 - xanthine dehydrogenase, 2Fe-2S subunit 248 45.20 -1 277765..278379 + 204 170079911 yagU ECDH10B_0275 - inner membrane protein 249 50.30 0 278627..278956 - 109 170079912 ykgJ ECDH10B_0276 - ferredoxin 250 53.02 0 279269..279979 - 236 170079913 yagV ECDH10B_0277 - hypothetical protein 251 51.58 0 279948..281591 - 547 170079914 yagW ECDH10B_0278 - receptor 252 55.27 0 281581..284106 - 841 170079915 yagX ECDH10B_0279 - aromatic compound dioxygenase 253 54.86 0 284132..284800 - 222 170079916 matC ECDH10B_0280 - hypothetical protein 254 52.89 0 284858..285445 - 195 170079917 matB ECDH10B_0281 - MAT fimbrillin 255 39.09 -2 285520..286110 - 196 170079918 matA ECDH10B_0282 - regulator 256 43.86 -1 286886..287113 + 75 170079919 ykgL ECDH10B_0283 - hypothetical protein 257 41.84 -1 287148..287288 - 46 170079920 ykgO ECDH10B_0284 - rpmJ (L36) paralog 258 45.83 -1 287288..287551 - 87 170079921 ykgM ECDH10B_0285 - rpmE (L31) paralog 259 48.31 0 289131..290018 + 295 170079922 eaeH ECDH10B_0286 - attaching and effacing protein, pathogenesis factor 51.13 MEAN 4.76 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0