IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1931	 47.46	0	2111925..2112710	+	261	170081594	fliR	ECDH10B_2092	-	flagellar export pore protein
1932	 38.14	-2	2113000..2113623	+	207	170081595	rcsA	ECDH10B_2093	-	DNA-binding transcriptional activator, co-regulator with RcsB
1933	 51.32	0	2113667..2113855	-	62	170081596	dsrB	ECDH10B_2094	-	hypothetical protein
1934	 48.68	0	2114018..2114245	+	75	170081597	yodD	ECDH10B_2095	-	hypothetical protein
1935	 52.08	0	2114543..2115358	+	271	170081598	yedP	ECDH10B_2097	-	hypothetical protein
1936	 51.39	0	2115355..2117049	-	564	170081599	yedQ	ECDH10B_2098	-	diguanylate cyclase
1937	 53.01	0	2117220..2117402	-	60	170081600	yodC	ECDH10B_2099	-	hypothetical protein
1938	 53.05	0	2117481..2118398	-	305	170081601	yedI	ECDH10B_2100	-	inner membrane protein
1939	 53.64	0	2118571..2119491	+	306	170081602	yedA	ECDH10B_2101	-	inner membrane protein
1940	 56.05	+1	2119480..2119950	-	156	170081603	vsr	ECDH10B_2102	-	DNA mismatch endonuclease of very short patch repair
1941	 52.15	0	2119931..2121349	-	472	170081604	dcm	ECDH10B_2103	-	DNA cytosine methylase
1942	 54.45	0	2121416..2122111	-	231	170081605	yedJ	ECDH10B_2104	-	phosphohydrolase
1943	 50.00	0	2122151..2122516	-	121	170081606	yedR	ECDH10B_2105	-	inner membrane protein
1944	 48.59	0	2124867..2125718	+	283	170081607	hchA	ECDH10B_2110	-	Hsp31 molecular chaperone
1945	 39.66	-2	2125826..2127184	-	452	170081608	yedV	ECDH10B_2111	-	sensory kinase in two-component regulatory system with YedW
1946	 44.79	-1	2127184..2127855	-	223	170081609	yedW	ECDH10B_2112	-	DNA-binding response regulator in two-component system with YedV
1947	 41.79	-1	2127988..2128401	+	137	170081610	yedX	ECDH10B_2113	-	hypothetical protein
1948	 47.96	0	2129515..2130150	+	211	170081611	yedZ	ECDH10B_2115	-	inner membrane protein
1949	 38.25	-2	2130407..2131057	+	216	170081612	yodA	ECDH10B_2116	-	metal-binding protein
1950	 42.18	-1	2131400..2131930	+	176	170081613	yodB	ECDH10B_2117	-	cytochrome
1951	 45.86	-1	2132683..2133480	+	265	170081614	yeeI	ECDH10B_2119	-	hypothetical protein
1952	 49.99	0	2133943..2141046	+	2367	170081615	yeeJ	ECDH10B_2121	-	adhesin
1953	 50.42	0	2142675..2143991	+	438	170081616	shiA	ECDH10B_2125	-	shikimate transporter
1954	 50.24	0	2144093..2145547	+	484	170081617	amn	ECDH10B_2126	-	AMP nucleosidase
1955	 39.89	-2	2145890..2146606	+	238	170081618	yeeN	ECDH10B_2127	-	hypothetical protein
1956	 48.30	0	2147235..2148878	-	547	170081619	yeeO	ECDH10B_2129	-	multidrug efflux system
1957	 48.26	0	2148996..2149946	-	316	170081620	cbl	ECDH10B_2131	-	DNA-binding transcriptional activator of cysteine biosynthesis
1958	 48.15	0	2150048..2150965	-	305	170081621	nac	ECDH10B_2132	-	DNA-binding transcriptional dual regulator of nitrogen assimilation
1959	 49.62	0	2151423..2152355	-	310	170081622	erfK	ECDH10B_2134	-	hypothetical protein
1960	 51.30	0	2152420..2153499	-	359	170081623	cobT	ECDH10B_2135	-	nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferase
1961	 53.49	0	2153511..2154254	-	247	170081624	cobS	ECDH10B_2136	-	cobalamin 5'-phosphate synthase
1962	 50.55	0	2154251..2154796	-	181	170081625	cobU	ECDH10B_2137	-	bifunctional cobinamide kinase and cobinamide phosphate guanylyltransferase
1963	 54.67	0	2155337..2156353	-	338	170081626	insH-6	ECDH10B_2138	-	CP4-44 prophage; IS5 transposase and trans-activator
1964	 55.08	0	2157984..2158889	-	301	170081627	insD-3	ECDH10B_2141	-	CP4-44 prophage; IS2 insertion element transposase InsAB'
1965	 50.85	0	2158847..2159257	-	136	170081628	insC-3	ECDH10B_2142	-	CP4-44 prophage; IS2 insertion element repressor InsA
1966	 58.24	+1	2160571..2163690	+	1039	170081629	flu	ECDH10B_2146	-	CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter
1967	 50.29	0	2163811..2165343	+	510	170081630	yeeR	ECDH10B_2147	-	CP4-44 prophage; membrane protein
1968	 58.17	+1	2165340..2165786	+	148	170081631	yeeS	ECDH10B_2148	-	CP4-44 prophage; DNA repair protein
1969	 52.70	0	2165849..2166070	+	73	170081632	yeeT	ECDH10B_2149	-	CP4-44 prophage; protein
1970	 57.18	+1	2166144..2166512	+	122	170081633	yeeU	ECDH10B_2150	-	CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system
1971	 53.07	0	2166601..2166975	+	124	170081634	yeeV	ECDH10B_2151	-	CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system
1972	 49.23	0	2166972..2167166	+	64	170081635	yeeW	ECDH10B_2152	-	CP4-44 prophage; protein
1973	 48.46	0	2167607..2167963	+	118	170081636	yoeF	ECDH10B_2153	-	hypothetical protein
1974	 46.97	0	2168064..2168459	-	131	170081637	yeeX	ECDH10B_2154	-	hypothetical protein
1975	 50.80	0	2168565..2169623	-	352	170081638	yeeA	ECDH10B_2155	-	inner membrane protein
1976	 47.26	0	2169821..2170294	-	157	170081639	sbmC	ECDH10B_2156	-	DNA gyrase inhibitor
1977	 49.27	0	2170413..2171579	-	388	170081640	dacD	ECDH10B_2157	-	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
1978	 50.07	0	2171788..2173215	+	475	170081641	sbcB	ECDH10B_2158	-	exonuclease I
1979	 50.44	0	2173258..2173485	-	75	170081642	yeeD	ECDH10B_2159	-	hypothetical protein
1980	 50.42	0	2173499..2174557	-	352	170081643	yeeE	ECDH10B_2160	-	inner membrane protein
1981	 52.69	0	2174736..2176094	-	452	170081644	yeeF	ECDH10B_2161	-	amino-acid transporter
1982	 50.43	0	2176361..2177290	-	309	170081645	yeeY	ECDH10B_2162	-	DNA-binding transcriptional regulator
1983	 51.88	0	2177336..2178160	-	274	170081646	yeeZ	ECDH10B_2163	-	epimerase
1984	 44.31	-1	2178243..2178497	-	84	170081647	yoeB	ECDH10B_2164	-	toxin of the YoeB-YefM toxin-antitoxin system
1985	 48.41	0	2178494..2178745	-	83	170081648	yefM	ECDH10B_2165	-	antitoxin of the YoeB-YefM toxin-antitoxin system
1986	 43.14	-1	2179028..2179078	+	16	170081649	hisL	ECDH10B_2166	-	his operon leader peptide
1987	 54.11	0	2179224..2180123	+	299	170081650	hisG	ECDH10B_2167	-	ATP phosphoribosyltransferase
1988	 58.08	+1	2180129..2181433	+	434	170081651	hisD	ECDH10B_2168	-	bifunctional histidinal dehydrogenase and histidinol dehydrogenase
1989	 55.37	0	2181430..2182500	+	356	170081652	hisC	ECDH10B_2169	-	histidinol-phosphate aminotransferase
1990	 53.37	0	2182500..2183567	+	355	170081653	hisB	ECDH10B_2170	-	fused histidinol-phosphatase; imidazoleglycerol-phosphate dehydratase
1991	 56.68	+1	2183567..2184157	+	196	170081654	hisH	ECDH10B_2171	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF
1992	 57.18	+1	2184157..2184894	+	245	170081655	hisA	ECDH10B_2172	-	N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase
1993	 51.87	0	2184876..2185652	+	258	170081656	hisF	ECDH10B_2173	-	imidazole glycerol phosphate synthase, catalytic subunit with HisH
1994	 54.58	0	2185646..2186257	+	203	170081657	hisI	ECDH10B_2174	-	fused phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphatase
1995	 45.87	-1	2186353..2187333	-	326	170081658	cld	ECDH10B_2175	-	regulator of length of O-antigen component of lipopolysaccharide chains
1996	 43.79	-1	2187479..2188645	-	388	170081659	ugd	ECDH10B_2176	-	UDP-glucose 6-dehydrogenase
1997	 50.18	0	2188894..2190300	-	468	170081660	gnd	ECDH10B_2177	-	gluconate-6-phosphate dehydrogenase, decarboxylating
1998	 54.67	0	2190927..2191943	-	338	170081661	insH-7	ECDH10B_2180	-	IS5 transposase and trans-activator
1999	 31.90	-2	2192423..2193541	-	372	170081662	wbbK	ECDH10B_2182	-	lipopolysaccharide biosynthesis protein
2000	 40.61	-2	2193526..2194116	-	196	170081663	wbbJ	ECDH10B_2183	-	acyl transferase
2001	 35.95	-2	2194097..2195089	-	330	170081664	wbbI	ECDH10B_2184	-	hypothetical protein
2002	 32.31	-2	2195092..2196258	-	388	170081665	wbbH	ECDH10B_2185	-	O-antigen polymerase
2003	 35.60	-2	2196258..2197361	-	367	170081666	glf	ECDH10B_2186	-	UDP-galactopyranose mutase, FAD/NAD(P)-binding
2004	 35.42	-2	2197369..2198616	-	415	170081667	rfbX	ECDH10B_2187	-	polisoprenol-linked O-antigen transporter
2005	 38.71	-2	2198613..2199170	-	185	170081668	rfbC	ECDH10B_2188	-	dTDP-4-deoxyrhamnose-3,5-epimerase
2006	 42.74	-1	2199170..2200051	-	293	170081669	rfbA	ECDH10B_2189	-	glucose-1-phosphate thymidylyltransferase
2007	 46.56	0	2200109..2201008	-	299	170081670	rfbD	ECDH10B_2190	-	dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase
2008	 43.65	-1	2201008..2202093	-	361	170081671	rfbB	ECDH10B_2191	-	dTDP-glucose 4,6 dehydratase, NAD(P)-binding
2009	 51.68	0	2202466..2203359	-	297	170081672	galF	ECDH10B_2192	-	subunit with GalU
2010	 47.10	0	2203534..2204928	-	464	170081673	wcaM	ECDH10B_2193	-	colanic acid biosynthesis protein
2011	 54.87	0	2204939..2206159	-	406	170081674	wcaL	ECDH10B_2194	-	glycosyl transferase
2012	 54.33	0	2206156..2207436	-	426	170081675	wcaK	ECDH10B_2195	-	pyruvyl transferase
2013	 54.09	0	2207712..2209190	-	492	170081676	wzxC	ECDH10B_2196	-	colanic acid exporter
2014	 54.62	0	2209192..2210586	-	464	170081677	wcaJ	ECDH10B_2197	-	UDP-glucose lipid carrier transferase
2015	 55.07	0	2210641..2212011	-	456	170081678	cpsG	ECDH10B_2198	-	phosphomannomutase
2016	 55.18	0	2212116..2213552	-	478	170081679	cpsB	ECDH10B_2199	-	mannose-1-phosphate guanyltransferase
2017	 55.56	0	2213555..2214778	-	407	170081680	wcaI	ECDH10B_2200	-	glycosyl transferase
2018	 54.58	0	2214775..2215254	-	159	170081681	nudD	ECDH10B_2201	-	GDP-mannose mannosyl hydrolase
2019	 56.42	+1	2215257..2216222	-	321	170081682	fcl	ECDH10B_2202	-	bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase
2020	 54.81	0	2216225..2217346	-	373	170081683	gmd	ECDH10B_2203	-	GDP-D-mannose dehydratase, NAD(P)-binding
2021	 47.91	0	2217372..2217920	-	182	170081684	wcaF	ECDH10B_2204	-	acyl transferase
2022	 45.52	-1	2217936..2218682	-	248	170081685	wcaE	ECDH10B_2205	-	glycosyl transferase
2023	 42.04	-1	2218693..221