IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1882	 51.35	0	2064847..2065734	-	295	170081545	motA	ECDH10B_2031	-	proton conductor component of flagella motor
1883	 46.39	0	2066456..2066815	-	119	170081546	flhD	ECDH10B_2033	-	DNA-binding transcriptional dual regulator with FlhC
1884	 44.99	-1	2068785..2069213	+	142	170081547	yecG	ECDH10B_2036	-	universal stress protein
1885	 49.19	0	2069220..2070644	-	474	170081548	otsA	ECDH10B_2037	-	trehalose-6-phosphate synthase
1886	 50.56	0	2070619..2071419	-	266	170081549	otsB	ECDH10B_2038	-	trehalose-6-phosphate phosphatase, biosynthetic
1887	 51.11	0	2071586..2072575	-	329	170081550	araH	ECDH10B_2039	-	subunit of L-arabinose ABC transporter containing membrane components
1888	 52.28	0	2072587..2074101	-	504	170081551	araG	ECDH10B_2040	-	subunit of L-arabinose ABC transporter containing ATP-binding components
1889	 51.82	0	2074171..2075160	-	329	170081552	araF	ECDH10B_2041	-	periplasmic-binding component of L-arabinose ABC transporter (precursor)
1890	 47.82	0	2075957..2076460	+	167	170081553	yecI	ECDH10B_2042	-	ferritin-like protein
1891	 48.41	0	2076539..2076790	-	83	170081554	yecJ	ECDH10B_2043	-	hypothetical protein
1892	 50.31	0	2077254..2077577	+	107	170081555	yecR	ECDH10B_2045	-	hypothetical protein
1893	 42.77	-1	2077748..2078245	+	165	170081556	ftn	ECDH10B_2046	-	ferritin iron storage protein (cytoplasmic)
1894	 47.08	0	2078283..2078522	-	79	170081557	yecH	ECDH10B_2047	-	hypothetical protein
1895	 51.24	0	2078713..2079924	+	403	170081558	tyrP	ECDH10B_2048	-	tyrosine transporter
1896	 53.00	0	2079986..2080651	-	221	170081559	yecA	ECDH10B_2049	-	metal-binding protein
1897	 52.46	0	2081301..2081849	-	182	170081560	pgsA	ECDH10B_2053	-	phosphatidylglycerophosphate synthetase
1898	 51.72	0	2081906..2083738	-	610	170081561	uvrC	ECDH10B_2054	-	excinuclease UvrABC, endonuclease subunit
1899	 49.77	0	2083735..2084391	-	218	170081562	uvrY	ECDH10B_2055	-	DNA-binding response regulator in two-component regulatory system with BarA
1900	 48.00	0	2084850..2085074	+	74	170081563	yecF	ECDH10B_2056	-	hypothetical protein
1901	 46.75	0	2085142..2085864	-	240	170081564	sdiA	ECDH10B_2057	-	DNA-binding transcriptional activator
1902	 54.32	0	2086094..2086846	-	250	170081565	yecC	ECDH10B_2058	-	ABC transporter ATP-binding protein
1903	 52.77	0	2086843..2087511	-	222	170081566	yecS	ECDH10B_2059	-	ABC transporter membrane protein
1904	 54.00	0	2087526..2088512	-	328	170081567	dcyD	ECDH10B_2060	-	D-cysteine desulfhydrase, PLP-dependent
1905	 49.81	0	2088617..2089417	-	266	170081568	fliY	ECDH10B_2061	-	cysteine ABC transporter periplasmic substrate binding protein
1906	 46.56	0	2089505..2090056	-	183	170081569	fliZ	ECDH10B_2062	-	regulator of FliA activity
1907	 54.17	0	2090102..2090821	-	239	170081570	fliA	ECDH10B_2063	-	RNA polymerase, sigma 28 (sigma F) factor
1908	 52.24	0	2092904..2094310	+	468	170081571	fliD	ECDH10B_2065	-	flagellar filament capping protein
1909	 49.88	0	2094335..2094745	+	136	170081572	fliS	ECDH10B_2066	-	flagellar protein potentiates polymerization
1910	 51.64	0	2094745..2095110	+	121	170081573	fliT	ECDH10B_2067	-	chaperone
1911	 49.80	0	2095188..2096675	+	495	170081574	amyA	ECDH10B_2068	-	cytoplasmic alpha-amylase
1912	 57.00	+1	2096709..2097122	-	137	170081575	yedD	ECDH10B_2069	-	hypothetical protein
1913	 54.89	0	2097309..2098514	+	401	170081576	yedE	ECDH10B_2070	-	inner membrane protein
1914	 48.29	0	2098511..2098744	+	77	170081577	yedF	ECDH10B_2071	-	hypothetical protein
1915	 51.87	0	2098853..2099521	+	222	170081578	yedK	ECDH10B_2072	-	hypothetical protein
1916	 47.08	0	2099632..2100111	+	159	170081579	yedL	ECDH10B_2073	-	acyltransferase
1917	 31.62	-2	2101033..2101383	-	116	170081580	yedM	ECDH10B_2077	-	hypothetical protein
1918	 53.97	0	2101732..2102046	-	104	170081581	fliE	ECDH10B_2079	-	flagellar basal-body component
1919	 54.61	0	2102261..2103919	+	552	170081582	fliF	ECDH10B_2080	-	flagellar basal-body MS-ring and collar protein
1920	 55.62	0	2103912..2104907	+	331	170081583	fliG	ECDH10B_2081	-	flagellar motor switching and energizing component
1921	 57.06	+1	2104900..2105586	+	228	170081584	fliH	ECDH10B_2082	-	flagellar biosynthesis protein
1922	 58.59	+1	2105586..2106959	+	457	170081585	fliI	ECDH10B_2083	-	flagellum-specific ATP synthase
1923	 51.58	0	2106978..2107421	+	147	170081586	fliJ	ECDH10B_2084	-	flagellar protein
1924	 54.88	0	2107418..2108545	+	375	170081587	fliK	ECDH10B_2085	-	flagellar hook-length control protein
1925	 53.33	0	2108650..2109114	+	154	170081588	fliL	ECDH10B_2086	-	flagellar biosynthesis protein
1926	 53.33	0	2109119..2110123	+	334	170081589	fliM	ECDH10B_2087	-	flagellar motor switching and energizing component
1927	 55.07	0	2110120..2110533	+	137	170081590	fliN	ECDH10B_2088	-	flagellar motor switching and energizing component
1928	 54.64	0	2110536..2110901	+	121	170081591	fliO	ECDH10B_2089	-	flagellar biosynthesis protein
1929	 53.12	0	2110901..2111638	+	245	170081592	fliP	ECDH10B_2090	-	flagellar biosynthesis protein
1930	 50.37	0	2111648..2111917	+	89	170081593	fliQ	ECDH10B_2091	-	flagellar biosynthesis protein
1931	 47.46	0	2111925..2112710	+	261	170081594	fliR	ECDH10B_2092	-	flagellar export pore protein
1932	 38.14	-2	2113000..2113623	+	207	170081595	rcsA	ECDH10B_2093	-	DNA-binding transcriptional activator, co-regulator with RcsB
1933	 51.32	0	2113667..2113855	-	62	170081596	dsrB	ECDH10B_2094	-	hypothetical protein
1934	 48.68	0	2114018..2114245	+	75	170081597	yodD	ECDH10B_2095	-	hypothetical protein
1935	 52.08	0	2114543..2115358	+	271	170081598	yedP	ECDH10B_2097	-	hypothetical protein
1936	 51.39	0	2115355..2117049	-	564	170081599	yedQ	ECDH10B_2098	-	diguanylate cyclase
1937	 53.01	0	2117220..2117402	-	60	170081600	yodC	ECDH10B_2099	-	hypothetical protein
1938	 53.05	0	2117481..2118398	-	305	170081601	yedI	ECDH10B_2100	-	inner membrane protein
1939	 53.64	0	2118571..2119491	+	306	170081602	yedA	ECDH10B_2101	-	inner membrane protein
1940	 56.05	+1	2119480..2119950	-	156	170081603	vsr	ECDH10B_2102	-	DNA mismatch endonuclease of very short patch repair
1941	 52.15	0	2119931..2121349	-	472	170081604	dcm	ECDH10B_2103	-	DNA cytosine methylase
1942	 54.45	0	2121416..2122111	-	231	170081605	yedJ	ECDH10B_2104	-	phosphohydrolase
1943	 50.00	0	2122151..2122516	-	121	170081606	yedR	ECDH10B_2105	-	inner membrane protein
1944	 48.59	0	2124867..2125718	+	283	170081607	hchA	ECDH10B_2110	-	Hsp31 molecular chaperone
1945	 39.66	-2	2125826..2127184	-	452	170081608	yedV	ECDH10B_2111	-	sensory kinase in two-component regulatory system with YedW
1946	 44.79	-1	2127184..2127855	-	223	170081609	yedW	ECDH10B_2112	-	DNA-binding response regulator in two-component system with YedV
1947	 41.79	-1	2127988..2128401	+	137	170081610	yedX	ECDH10B_2113	-	hypothetical protein
1948	 47.96	0	2129515..2130150	+	211	170081611	yedZ	ECDH10B_2115	-	inner membrane protein
1949	 38.25	-2	2130407..2131057	+	216	170081612	yodA	ECDH10B_2116	-	metal-binding protein
1950	 42.18	-1	2131400..2131930	+	176	170081613	yodB	ECDH10B_2117	-	cytochrome
1951	 45.86	-1	2132683..2133480	+	265	170081614	yeeI	ECDH10B_2119	-	hypothetical protein
1952	 49.99	0	2133943..2141046	+	2367	170081615	yeeJ	ECDH10B_2121	-	adhesin
1953	 50.42	0	2142675..2143991	+	438	170081616	shiA	ECDH10B_2125	-	shikimate transporter
1954	 50.24	0	2144093..2145547	+	484	170081617	amn	ECDH10B_2126	-	AMP nucleosidase
1955	 39.89	-2	2145890..2146606	+	238	170081618	yeeN	ECDH10B_2127	-	hypothetical protein
1956	 48.30	0	2147235..2148878	-	547	170081619	yeeO	ECDH10B_2129	-	multidrug efflux system
1957	 48.26	0	2148996..2149946	-	316	170081620	cbl	ECDH10B_2131	-	DNA-binding transcriptional activator of cysteine biosynthesis
1958	 48.15	0	2150048..2150965	-	305	170081621	nac	ECDH10B_2132	-	DNA-binding transcriptional dual regulator of nitrogen assimilation
1959	 49.62	0	2151423..2152355	-	310	170081622	erfK	ECDH10B_2134	-	hypothetical protein
1960	 51.30	0	2152420..2153499	-	359	170081623	cobT	ECDH10B_2135	-	nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferase
1961	 53.49	0	2153511..2154254	-	247	170081624	cobS	ECDH10B_2136	-	cobalamin 5'-phosphate synthase
1962	 50.55	0	2154251..2154796	-	181	170081625	cobU	ECDH10B_2137	-	bifunctional cobinamide kinase and cobinamide phosphate guanylyltransferase
1963	 54.67	0	2155337..2156353	-	338	170081626	insH-6	ECDH10B_2138	-	CP4-44 prophage; IS5 transposase and trans-activator
1964	 55.08	0	2157984..2158889	-	301	170081627	insD-3	ECDH10B_2141	-	CP4-44 prophage; IS2 insertion element transposase InsAB'
1965	 50.85	0	2158847..2159257	-	136	170081628	insC-3	ECDH10B_2142	-	CP4-44 prophage; IS2 insertion element repressor InsA
1966	 58.24	+1	2160571..2163690	+	1039	170081629	flu	ECDH10B_2146	-	CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter
1967	 50.29	0	2163811..2165343	+	510	170081630	yeeR	ECDH10B_2147	-	CP4-44 prophage; membrane protein
1968	 58.17	+1	2165340..2165786	+	148	170081631	yeeS	ECDH10B_2148	-	CP4-44 prophage; DNA repair protein
1969	 52.70	0	2165849..2166070	+	73	170081632	yeeT	ECDH10B_2149	-	CP4-44 prophage; protein
1970	 57.18	+1	2166144..2166512	+	122	170081633	yeeU	ECDH10B_2150	-	CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system
1971	 53.07	0	2166601..2166975	+	124	170081634	yeeV	ECDH10B_2151	-	CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system
1972	 49.23	0	2166972..2167166	+	64	170081635	yeeW	ECDH10B_2152	-	CP4-44 prophage; protein
1973	 48.46	0	2167607..2167963	+	118	170081636	yoeF	ECDH10B_2153	-	hypothetical protein
1974	 46.97	0	2168064..2168459	-	131	170081637	yee