IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1790	 48.33	0	1968184..1968543	-	119	170081453	yeaR	ECDH10B_1935	-	hypothetical protein
1791	 45.23	-1	1968716..1969354	-	212	170081454	yeaS	ECDH10B_1936	-	neutral amino-acid efflux system
1792	 52.38	0	1969481..1970404	-	307	170081455	yeaT	ECDH10B_1937	-	DNA-binding transcriptional regulator
1793	 53.68	0	1970507..1971592	+	361	170081456	yeaU	ECDH10B_1938	-	dehydrogenase
1794	 51.24	0	1971783..1973228	+	481	170081457	yeaV	ECDH10B_1939	-	transporter
1795	 51.73	0	1973260..1974384	+	374	170081458	yeaW	ECDH10B_1940	-	2Fe-2S cluster-containing protein
1796	 50.10	0	1974440..1975405	+	321	170081459	yeaX	ECDH10B_1941	-	oxidoreductase
1797	 54.08	0	1975459..1976586	-	375	170081460	rnd	ECDH10B_1942	-	ribonuclease D
1798	 51.19	0	1976656..1978341	-	561	170081461	fadD	ECDH10B_1943	-	acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)
1799	 53.61	0	1978546..1979127	-	193	170081462	yeaY	ECDH10B_1944	-	lipoprotein
1800	 55.60	0	1979167..1979862	-	231	170081463	yeaZ	ECDH10B_1945	-	peptidase
1801	 55.21	0	1979920..1981830	-	636	170081464	yoaA	ECDH10B_1946	-	hypothetical protein
1802	 51.59	0	1981962..1982306	+	114	170081465	yoaB	ECDH10B_1947	-	hypothetical protein
1803	 41.67	-1	1982668..1983027	+	119	170081466	yoaC	ECDH10B_1948	-	hypothetical protein
1804	 56.11	+1	1983147..1983326	-	59	170081467	yoaH	ECDH10B_1949	-	hypothetical protein
1805	 54.92	0	1984765..1985343	+	192	170081468	yeaB	ECDH10B_1951	-	NUDIX hydrolase
1806	 53.99	0	1985527..1986891	+	454	170081469	sdaA	ECDH10B_1952	-	L-serine deaminase I
1807	 50.53	0	1987022..1988620	+	532	170081470	yoaD	ECDH10B_1953	-	phosphodiesterase
1808	 53.89	0	1988624..1990180	-	518	170081471	yoaE	ECDH10B_1954	-	fused membrane protein; protein
1809	 50.31	0	1990643..1991614	+	323	170081472	manX	ECDH10B_1955	-	fused mannose-specific PTS enzymes: IIA component; IIB component
1810	 51.56	0	1991677..1992477	+	266	170081473	manY	ECDH10B_1956	-	mannose-specific enzyme IIC component of PTS
1811	 52.73	0	1992481..1993341	+	286	170081474	manZ	ECDH10B_1957	-	mannose-specific enzyme IID component of PTS
1812	 45.10	-1	1993396..1993854	+	152	170081475	yobD	ECDH10B_1958	-	inner membrane protein
1813	 51.68	0	1994283..1994849	+	188	170081476	yebN	ECDH10B_1959	-	inner membrane protein
1814	 51.36	0	1994846..1995655	-	269	170081477	rrmA	ECDH10B_1960	-	23S rRNA m1G745 methyltransferase
1815	 46.67	0	1995821..1996030	-	69	170081478	cspC	ECDH10B_1961	-	CspA family stress protein
1816	 42.36	-1	1996043..1996186	-	47	170081479	yobF	ECDH10B_1962	-	hypothetical protein
1817	 43.40	-1	1996856..1997143	-	95	170081480	yebO	ECDH10B_1963	-	hypothetical protein
1818	 46.53	0	1997218..1997361	-	47	170081481	yobG	ECDH10B_1964	-	hypothetical protein
1819	 43.75	-1	1997520..1997759	+	79	170081482	yobH	ECDH10B_1965	-	hypothetical protein
1820	 49.75	0	1997903..1998694	-	263	170081483	kdgR	ECDH10B_1966	-	DNA-binding transcriptional regulator
1821	 52.33	0	1998871..2000244	+	457	170081484	yebQ	ECDH10B_1967	-	transporter
1822	 53.51	0	2000290..2001171	-	293	170081485	htpX	ECDH10B_1968	-	endopeptidase
1823	 50.37	0	2001363..2003411	-	682	170081486	prc	ECDH10B_1969	-	carboxy-terminal protease for penicillin-binding protein 3
1824	 52.93	0	2003431..2004129	-	232	170081487	proQ	ECDH10B_1970	-	structural transport element
1825	 47.83	0	2004226..2004777	-	183	170081488	yebR	ECDH10B_1971	-	hypothetical protein
1826	 50.08	0	2004853..2006136	+	427	170081489	yebS	ECDH10B_1972	-	inner membrane protein
1827	 53.64	0	2006105..2008738	+	877	170081490	yebT	ECDH10B_1973	-	hypothetical protein
1828	 51.81	0	2008818..2010257	+	479	170081491	yebU	ECDH10B_1974	-	methyltransferase
1829	 48.52	0	2010375..2010611	+	78	170081492	yebV	ECDH10B_1975	-	hypothetical protein
1830	 45.83	-1	2010716..2010907	+	63	170081493	yebW	ECDH10B_1976	-	hypothetical protein
1831	 47.79	0	2010908..2011564	-	218	170081494	pphA	ECDH10B_1977	-	serine/threonine-specific protein phosphatase 1
1832	 45.91	-1	2011960..2012301	-	113	170081495	yebY	ECDH10B_1980	-	hypothetical protein
1833	 53.15	0	2012314..2013186	-	290	170081496	yebZ	ECDH10B_1981	-	inner membrane protein
1834	 49.87	0	2013190..2013564	-	124	170081497	yobA	ECDH10B_1982	-	hypothetical protein
1835	 48.48	0	2013703..2013933	+	76	170081498	holE	ECDH10B_1983	-	DNA polymerase III, theta subunit
1836	 52.05	0	2014035..2014691	+	218	170081499	yobB	ECDH10B_1984	-	hypothetical protein
1837	 51.89	0	2014715..2015377	+	220	170081500	exoX	ECDH10B_1985	-	DNA exonuclease X
1838	 49.83	0	2015374..2017434	-	686	170081501	ptrB	ECDH10B_1986	-	protease II
1839	 52.73	0	2017643..2018302	-	219	170081502	yebE	ECDH10B_1987	-	hypothetical protein
1840	 48.78	0	2018629..2018997	-	122	170081503	yebF	ECDH10B_1988	-	hypothetical protein
1841	 49.48	0	2019052..2019342	-	96	170081504	yebG	ECDH10B_1989	-	protein regulated by LexA
1842	 53.77	0	2019476..2020654	+	392	170081505	purT	ECDH10B_1990	-	phosphoribosylglycinamide formyltransferase 2
1843	 56.23	+1	2020710..2021351	-	213	170081506	eda	ECDH10B_1991	-	multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase
1844	 53.64	0	2021388..2023199	-	603	170081507	edd	ECDH10B_1992	-	6-phosphogluconate dehydratase
1845	 51.69	0	2023434..2024909	-	491	170081508	zwf	ECDH10B_1993	-	glucose-6-phosphate dehydrogenase
1846	 48.97	0	2025247..2026116	+	289	170081509	yebK	ECDH10B_1994	-	DNA-binding transcriptional regulator
1847	 52.81	0	2026244..2027686	+	480	170081510	pykA	ECDH10B_1995	-	pyruvate kinase II
1848	 51.54	0	2027817..2028788	-	323	170081511	lpxM	ECDH10B_1996	-	myristoyl-acyl carrier protein (ACP)-dependent acyltransferase
1849	 52.46	0	2028908..2030230	-	440	170081512	yebA	ECDH10B_1997	-	peptidase
1850	 49.09	0	2030246..2031178	-	310	170081513	znuA	ECDH10B_1998	-	zinc ABC transporter periplasmic substrate-binding protein
1851	 49.21	0	2031257..2032012	+	251	170081514	znuC	ECDH10B_1999	-	zinc ABC transporter ATP-binding protein
1852	 51.91	0	2032009..2032794	+	261	170081515	znuB	ECDH10B_2000	-	zinc ABC transporter membrane protein
1853	 52.72	0	2032941..2033951	-	336	170081516	ruvB	ECDH10B_2001	-	ATP-dependent DNA helicase, component of RuvABC resolvasome
1854	 53.27	0	2033960..2034571	-	203	170081517	ruvA	ECDH10B_2002	-	component of RuvABC resolvasome, regulatory subunit
1855	 44.11	-1	2034846..2035448	+	200	170081518	yebB	ECDH10B_2003	-	hypothetical protein
1856	 55.94	+1	2035450..2035971	-	173	170081519	ruvC	ECDH10B_2004	-	component of RuvABC resolvasome, endonuclease
1857	 52.23	0	2036006..2036746	-	246	170081520	yebC	ECDH10B_2005	-	hypothetical protein
1858	 52.54	0	2036775..2037227	-	150	170081521	nudB	ECDH10B_2006	-	dATP pyrophosphohydrolase
1859	 53.75	0	2037345..2039117	-	590	170081522	aspS	ECDH10B_2007	-	aspartyl-tRNA synthetase
1860	 53.09	0	2039427..2039993	+	188	170081523	yecD	ECDH10B_2008	-	hydrolase
1861	 51.04	0	2039990..2040808	+	272	170081524	yecE	ECDH10B_2009	-	hypothetical protein
1862	 50.76	0	2040861..2041256	+	131	170081525	yecN	ECDH10B_2010	-	inner membrane protein
1863	 50.67	0	2041297..2042040	+	247	170081526	yecO	ECDH10B_2011	-	methyltransferase
1864	 52.06	0	2042037..2043008	+	323	170081527	yecP	ECDH10B_2012	-	S-adenosyl-L-methionine-dependent methyltransferase
1865	 51.32	0	2043173..2045602	-	809	170081528	torZ	ECDH10B_2013	-	trimethylamine N-oxide reductase system III, catalytic subunit
1866	 47.41	0	2045627..2046727	-	366	170081529	torY	ECDH10B_2014	-	TMAO reductase III (TorYZ), cytochrome c-type subunit
1867	 51.94	0	2047115..2047861	-	248	170081530	cutC	ECDH10B_2015	-	copper homeostasis protein
1868	 50.79	0	2047875..2048441	-	188	170081531	yecM	ECDH10B_2016	-	metal-binding protein
1869	 53.29	0	2048657..2050390	+	577	170081532	argS	ECDH10B_2017	-	arginyl-tRNA synthetase
1870	 38.85	-2	2050567..2051055	+	162	170081533	yecT	ECDH10B_2018	-	hypothetical protein
1871	 52.67	0	2051175..2051567	-	130	170081534	flhE	ECDH10B_2019	-	hypothetical protein
1872	 54.88	0	2051567..2053645	-	692	170081535	flhA	ECDH10B_2020	-	flagellar export pore protein
1873	 54.92	0	2053638..2054786	-	382	170081536	flhB	ECDH10B_2021	-	flagellar export pore protein
1874	 53.49	0	2054988..2055632	-	214	170081537	cheZ	ECDH10B_2022	-	chemotaxis regulator, protein phosphatase for CheY
1875	 49.23	0	2055643..2056032	-	129	170081538	cheY	ECDH10B_2023	-	chemotaxis regulator transmitting signal to flagellar motor component
1876	 54.29	0	2056047..2057096	-	349	170081539	cheB	ECDH10B_2024	-	fused chemotaxis regulator and protein-glutamate methylesterase in two-component regulatory system with CheA
1877	 54.24	0	2057099..2057959	-	286	170081540	cheR	ECDH10B_2025	-	chemotaxis regulator, protein-glutamate methyltransferase
1878	 53.56	0	2057978..2059579	-	533	170081541	tap	ECDH10B_2026	-	methyl-accepting protein IV
1879	 52.77	0	2059625..2061286	-	553	170081542	tar	ECDH10B_2027	-	methyl-accepting chemotaxis protein II
1880	 51.98	0	2061431..2061934	-	167	170081543	cheW	ECDH10B_2028	-	purine-binding chemotaxis protein
1881	 53.18	0	2063924..2064850	-	308	170081544	motB	ECDH10B_2030	-	hypothetical protein
1882	 51.35	0	2064847..2065734	-	295	170081545	motA	ECDH10B_2031	-	proton conductor component of flagella motor
1883	 46.39	0	2066456..2066815	-	119	170081546	flhD	ECDH10B_2033	-	DNA-binding transcriptional dual regulator with FlhC
1884	 44.99	-1	2068785..2069213	+	142