IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
129	 53.87	0	149211..150632	+	473	170079792	clcA	ECDH10B_0135	-	chloride channel, voltage-gated
130	 50.72	0	150714..151058	+	114	170079793	yadR	ECDH10B_0136	-	hypothetical protein
131	 53.69	0	151105..151728	-	207	170079794	yadS	ECDH10B_0137	-	inner membrane protein
132	 52.93	0	151766..152566	-	266	170079795	btuF	ECDH10B_0138	-	periplasmic binding component of cobalamin (vitamin B-12) transporter
133	 52.36	0	152559..153257	-	232	170079796	pfs	ECDH10B_0139	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
134	 47.96	0	153341..154858	+	505	170079797	dgt	ECDH10B_0140	-	deoxyguanosine triphosphate triphosphohydrolase
135	 53.96	0	154988..156412	+	474	170079798	degP	ECDH10B_0141	-	serine endoprotease (protease Do), membrane-associated
136	 52.85	0	156567..157724	+	385	170079799	cdaR	ECDH10B_0142	-	DNA-binding transcriptional activator
137	 44.44	-1	157813..158199	-	128	170079800	yaeH	ECDH10B_0143	-	hypothetical protein
138	 51.41	0	158361..159173	-	270	170079801	yaeI	ECDH10B_0144	-	phosphatase
139	 53.09	0	159227..160051	-	274	170079802	dapD	ECDH10B_0145	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
140	 53.95	0	160082..162754	-	890	170079803	glnD	ECDH10B_0146	-	uridylyltransferase/uridylyl-removing enzyme
141	 50.44	0	162816..163610	-	264	170079804	map	ECDH10B_0147	-	methionine aminopeptidase
142	 51.38	0	163978..164703	+	241	170079805	rpsB	ECDH10B_0149	-	30S ribosomal subunit protein S2
143	 49.88	0	164961..165812	+	283	170079806	tsf	ECDH10B_0150	-	protein chain elongation factor EF-Ts
144	 52.75	0	165959..166684	+	241	170079807	pyrH	ECDH10B_0151	-	uridylate kinase
145	 50.90	0	166976..167533	+	185	170079808	frr	ECDH10B_0152	-	ribosome recycling factor
146	 52.63	0	167625..168821	+	398	170079809	dxr	ECDH10B_0153	-	1-deoxy-d-xylulose 5-phosphate reductoisomerase
147	 50.00	0	169007..169768	+	253	170079810	ispU	ECDH10B_0154	-	undecaprenyl pyrophosphate synthase
148	 50.82	0	169781..170638	+	285	170079811	cdsA	ECDH10B_0155	-	CDP-diglyceride synthase
149	 50.92	0	170650..172002	+	450	170079812	rseP	ECDH10B_0156	-	inner membrane zinc RIP metalloprotease
150	 50.68	0	172032..174464	+	810	170079813	ecfK	ECDH10B_0157	-	hypothetical protein
151	 50.21	0	174586..175071	+	161	170079814	skp	ECDH10B_0158	-	periplasmic chaperone
152	 52.83	0	175075..176100	+	341	170079815	lpxD	ECDH10B_0159	-	UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase
153	 50.44	0	176205..176660	+	151	170079816	fabZ	ECDH10B_0160	-	(3R)-hydroxymyristol acyl carrier protein dehydratase
154	 53.11	0	176664..177452	+	262	170079817	lpxA	ECDH10B_0161	-	UDP-N-acetylglucosamine acetyltransferase
155	 53.79	0	177452..178600	+	382	170079818	lpxB	ECDH10B_0162	-	tetraacyldisaccharide-1-P synthase
156	 57.29	+1	178597..179193	+	198	170079819	rnhB	ECDH10B_0163	-	ribonuclease HII, degrades RNA of DNA-RNA hybrids
157	 54.95	0	179230..182712	+	1160	170079820	dnaE	ECDH10B_0164	-	DNA polymerase III alpha subunit
158	 52.29	0	182725..183684	+	319	170079821	accA	ECDH10B_0165	-	acetyl-CoA carboxylase, carboxytransferase, alpha subunit
159	 50.89	0	183783..185924	+	713	170079822	ldcC	ECDH10B_0166	-	lysine decarboxylase 2, constitutive
160	 50.51	0	185981..186370	+	129	170079823	yaeR	ECDH10B_0167	-	lyase
161	 58.04	+1	186435..187733	+	432	170079824	tilS	ECDH10B_0168	-	tRNA(Ile)-lysidine synthetase
162	 47.84	0	187782..188036	-	84	170079825	rof	ECDH10B_0169	-	modulator of Rho-dependent transcription termination
163	 50.75	0	188029..188229	-	66	170079826	yaeP	ECDH10B_0170	-	hypothetical protein
164	 52.38	0	188395..188940	+	181	170079827	yaeQ	ECDH10B_0171	-	hypothetical protein
165	 54.14	0	188937..189359	+	140	170079828	yaeJ	ECDH10B_0172	-	hypothetical protein
166	 52.32	0	189373..190083	+	236	170079829	nlpE	ECDH10B_0173	-	lipoprotein involved with copper homeostasis and adhesion
167	 49.33	0	190283..191107	-	274	170079830	yaeF	ECDH10B_0174	-	lipoprotein
168	 54.51	0	191161..192879	-	572	170079831	proS	ECDH10B_0175	-	prolyl-tRNA synthetase
169	 55.23	0	192991..193698	-	235	170079832	yaeB	ECDH10B_0176	-	hypothetical protein
170	 53.33	0	193695..194099	-	134	170079833	rcsF	ECDH10B_0177	-	outer membrane protein, signal
171	 49.14	0	194217..195032	-	271	170079834	metQ	ECDH10B_0178	-	receptor component of DL-methionine uptake transporter (MUT)
172	 52.29	0	195072..195725	-	217	170079835	metI	ECDH10B_0179	-	membrane component of DL-methionine uptake transporter (MUT)
173	 52.91	0	195718..196749	-	343	170079836	metN	ECDH10B_0180	-	ATP-binding component of DL-methionine uptake transporter (MUT)
174	 50.17	0	196937..197512	+	191	170079837	gmhB	ECDH10B_0181	-	D,D-heptose 1,7-bisphosphate phosphatase
175	 46.27	-1	203271..204074	+	267	170079838	dkgB	ECDH10B_0188	-	2,5-diketo-D-gluconate reductase B
176	 49.62	0	204071..204985	-	304	170079839	yafC	ECDH10B_0189	-	DNA-binding transcriptional regulator
177	 52.68	0	205226..206026	+	266	170079840	yafD	ECDH10B_0190	-	hypothetical protein
178	 49.04	0	206030..206653	+	207	170079841	yafE	ECDH10B_0191	-	S-adenosyl-L-methionine-dependent methyltransferase
179	 51.95	0	206701..208059	-	452	170079842	mltD	ECDH10B_0192	-	membrane-bound lytic murein transglycosylase D
180	 40.21	-2	208131..208886	-	251	170079843	gloB	ECDH10B_0193	-	hydroxyacylglutathione hydrolase
181	 49.38	0	208920..209642	+	240	170079844	yafS	ECDH10B_0194	-	S-adenosyl-L-methionine-dependent methyltransferase
182	 50.43	0	209639..210106	-	155	170079845	rnhA	ECDH10B_0195	-	ribonuclease HI, degrades RNA of DNA-RNA hybrids
183	 50.14	0	210171..210902	+	243	170079846	dnaQ	ECDH10B_0196	-	DNA polymerase III epsilon subunit
184	 42.75	-1	211439..212224	+	261	170079847	yafT	ECDH10B_0198	-	aminopeptidase
185	 54.73	0	213523..214293	-	256	170079848	yafV	ECDH10B_0201	-	C-N hydrolase family amidase, NAD(P)-binding
186	 50.00	0	214447..214920	+	157	170079849	ivy	ECDH10B_0202	-	inhibitor of vertebrate C-lysozyme
187	 56.89	+1	214963..217407	-	814	170079850	fadE	ECDH10B_0203	-	acyl coenzyme A dehydrogenase
188	 50.95	0	217647..218225	+	192	170079851	lpcA	ECDH10B_0204	-	D-sedoheptulose 7-phosphate isomerase
189	 53.65	0	218431..219198	+	255	170079852	yafJ	ECDH10B_0205	-	amidotransfease
190	 48.45	0	219169..219909	-	246	170079853	yafK	ECDH10B_0206	-	hypothetical protein
191	 39.43	-2	220065..220343	-	92	170079854	yafQ	ECDH10B_0207	-	toxin of the YafQ-DinJ toxin-antitoxin system
192	 46.74	0	220346..220606	-	86	170079855	dinJ	ECDH10B_0208	-	antitoxin of YafQ-DinJ toxin-antitoxin system
193	 52.27	0	220816..221565	+	249	170079856	yafL	ECDH10B_0209	-	C40 family peptidase
194	 44.78	-1	221741..222238	+	165	170079857	yafM	ECDH10B_0210	-	hypothetical protein
195	 54.17	0	225002..226057	+	351	170079858	dinB	ECDH10B_0213	-	DNA polymerase IV
196	 42.18	-1	226109..226402	+	97	170079859	yafN	ECDH10B_0214	-	antitoxin of the YafO-YafN toxin-antitoxin system
197	 43.61	-1	226405..226803	+	132	170079860	yafO	ECDH10B_0215	-	toxin of the YafO-YafN toxin-antitoxin system
198	 43.27	-1	226813..227265	+	150	170079861	yafP	ECDH10B_0216	-	acyltransferase
199	 51.37	0	228363..229820	-	485	170079862	pepD	ECDH10B_0219	-	aminoacyl-histidine dipeptidase (peptidase D)
200	 51.85	0	230081..230539	+	152	170079863	gpt	ECDH10B_0220	-	guanine-xanthine phosphoribosyltransferase
201	 53.65	0	230631..231875	+	414	170079864	frsA	ECDH10B_0221	-	fermentation/respiration switch protein
202	 50.50	0	231933..232334	+	133	170079865	crl	ECDH10B_0222	-	DNA-binding transcriptional regulator
203	 44.70	-1	232373..233428	-	351	170079866	phoE	ECDH10B_0223	-	outer membrane phosphoporin protein E
204	 56.25	+1	233716..234819	+	367	170079867	proB	ECDH10B_0224	-	gamma-glutamate kinase
205	 54.31	0	234831..236084	+	417	170079868	proA	ECDH10B_0225	-	gamma-glutamylphosphate reductase
206	 51.17	0	236656..236997	-	113	170079869	ykfI	ECDH10B_0227	-	CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system
207	 56.92	+1	237018..237335	-	105	170079870	yafW	ECDH10B_0228	-	CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system
208	 55.86	0	237354..237575	-	73	170079871	ykfH	ECDH10B_0229	-	hypothetical protein
209	 58.49	+1	237584..238060	-	158	170079872	ykfG	ECDH10B_0230	-	CP4-6 prophage; DNA repair protein
210	 55.56	0	238076..238534	-	152	170079873	yafX	ECDH10B_0231	-	CP4-6 prophage; hypothetical protein
211	 58.75	+1	238632..238871	-	79	170079874	ykfF	ECDH10B_0232	-	CP4-6 prophage; hypothetical protein
212	 52.56	0	238948..239415	-	155	170079875	ykfB	ECDH10B_0233	-	CP4-6 prophage; hypothetical protein
213	 50.68	0	239438..239881	-	147	170079876	yafY	ECDH10B_0234	-	CP4-6 prophage; inner membrane lipoprotein
214	 57.79	+1	240512..241333	-	273	170079877	yafZ	ECDH10B_0237	-	CP4-6 prophage; hypothetical protein
215	 56.83	+1	241425..242288	-	287	170079878	ykfA	ECDH10B_0238	-	CP4-6 prophage; GTP-binding protein
216	 47.99	0	242617..243510	-	297	170079879	perR	ECDH10B_0239	-	CP4-6 prophage; DNA-binding transcriptional regulator
217	 43.70	-1	243570..243974	+	134	170079880	insN-1	ECDH10B_0240	-	CP4-6 prophage; partial regulator of insertion element IS911A
218	 45.83	-1	243931..245082	+	383	170079881	insI-1	ECDH10B_0241	-	CP4-6 prophage; IS30 transposase
219	 55.63	0	245158..245583	+	141	170079882	insO-1	ECDH10B_0243	-	CP4-6 prophage; partial transposase of insertion element IS911A
220	 54.67	0	247429..248445	-	338	170079883	insH-1	ECDH10B_0245	-	CP4-6 prophage; IS5 transposase and trans-activator
221	 54.84	0	248653..250056	+	467	170079884	mmuP	ECDH10B_0246	-	CP4-6 prophage; S-methylmethionine transporter
222	 60.34	+1	250043..250975	+	310