IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1653	 56.90	+1	1817682..1822298	+	1538	170081316	lhr	ECDH10B_1787	-	ATP-dependent helicase
1654	 52.59	0	1822349..1822696	-	115	170081317	grxD	ECDH10B_1788	-	monothiol glutaredoxin
1655	 47.79	0	1823030..1823845	+	271	170081318	ydhO	ECDH10B_1789	-	lipoprotein
1656	 50.17	0	1823973..1824554	+	193	170081319	sodB	ECDH10B_1790	-	superoxide dismutase, Fe
1657	 53.33	0	1824716..1825885	-	389	170081320	ydhP	ECDH10B_1791	-	transporter
1658	 53.70	0	1827461..1828393	-	310	170081321	ydhB	ECDH10B_1793	-	DNA-binding transcriptional regulator
1659	 53.38	0	1828506..1829717	+	403	170081322	ydhC	ECDH10B_1794	-	transporter
1660	 47.95	0	1830008..1831156	+	382	170081323	cfa	ECDH10B_1795	-	cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase)
1661	 47.51	0	1831196..1831837	-	213	170081324	ribC	ECDH10B_1796	-	riboflavin synthase, alpha subunit
1662	 52.98	0	1832052..1833425	+	457	170081325	mdtK	ECDH10B_1797	-	multidrug efflux system transporter
1663	 51.39	0	1833466..1834722	-	418	170081326	ydhQ	ECDH10B_1798	-	hypothetical protein
1664	 44.77	-1	1835295..1835600	+	101	170081327	ydhR	ECDH10B_1801	-	putative mono-oxygenase
1665	 47.85	0	1835726..1837330	+	534	170081328	ydhS	ECDH10B_1802	-	hypothetical protein
1666	 52.89	0	1837342..1838154	-	270	170081329	ydhT	ECDH10B_1803	-	hypothetical protein
1667	 49.24	0	1838158..1838943	-	261	170081330	ydhU	ECDH10B_1804	-	cytochrome
1668	 50.37	0	1838940..1839608	-	222	170081331	ydhX	ECDH10B_1805	-	4Fe-4S ferridoxin-type protein
1669	 52.31	0	1839672..1840319	-	215	170081332	ydhW	ECDH10B_1806	-	hypothetical protein
1670	 47.98	0	1840323..1842425	-	700	170081333	ydhV	ECDH10B_1807	-	oxidoreductase
1671	 49.44	0	1842446..1843072	-	208	170081334	ydhY	ECDH10B_1808	-	4Fe-4S ferridoxin-type protein
1672	 46.67	0	1843527..1843736	-	69	170081335	ydhZ	ECDH10B_1809	-	hypothetical protein
1673	 49.89	0	1844293..1845705	+	470	170081336	pykF	ECDH10B_1810	-	pyruvate kinase I
1674	 50.63	0	1846016..1846252	+	78	170081337	lpp	ECDH10B_1811	-	murein lipoprotein
1675	 51.84	0	1846316..1847320	-	334	170081338	ynhG	ECDH10B_1812	-	hypothetical protein
1676	 48.68	0	1847469..1847885	-	138	170081339	sufE	ECDH10B_1813	-	sulfur acceptor protein
1677	 54.87	0	1847898..1849118	-	406	170081340	sufS	ECDH10B_1814	-	selenocysteine lyase, PLP-dependent
1678	 53.30	0	1849115..1850386	-	423	170081341	sufD	ECDH10B_1815	-	component of SufBCD complex
1679	 50.47	0	1850361..1851107	-	248	170081342	sufC	ECDH10B_1816	-	SufBCD complex ATP-binding protein
1680	 51.55	0	1851117..1852604	-	495	170081343	sufB	ECDH10B_1817	-	component of SufBCD complex
1681	 53.39	0	1852613..1852981	-	122	170081344	sufA	ECDH10B_1818	-	Fe-S cluster assembly protein
1682	 44.44	-1	1853529..1853798	-	89	170081345	ydiH	ECDH10B_1820	-	hypothetical protein
1683	 51.58	0	1853817..1854227	-	136	170081346	ydiI	ECDH10B_1821	-	esterase
1684	 53.81	0	1854224..1857280	-	1018	170081347	ydiJ	ECDH10B_1822	-	FAD-linked oxidoreductase
1685	 54.90	0	1857669..1858781	+	370	170081348	ydiK	ECDH10B_1823	-	inner membrane protein
1686	 45.66	-1	1859210..1859566	+	118	170081349	ydiL	ECDH10B_1825	-	hypothetical protein
1687	 44.94	-1	1859666..1860880	+	404	170081350	ydiM	ECDH10B_1826	-	transporter
1688	 45.34	-1	1861107..1862372	+	421	170081351	ydiN	ECDH10B_1827	-	transporter
1689	 47.75	0	1862384..1863250	+	288	170081352	ydiB	ECDH10B_1828	-	quinate/shikimate 5-dehydrogenase, NAD(P)-binding
1690	 50.46	0	1863281..1864039	+	252	170081353	aroD	ECDH10B_1829	-	3-dehydroquinate dehydratase
1691	 51.91	0	1865791..1866942	+	383	170081354	ydiO	ECDH10B_1831	-	acyl-CoA dehydrogenase
1692	 42.00	-1	1866985..1867896	-	303	170081355	ydiP	ECDH10B_1832	-	DNA-binding transcriptional regulator
1693	 51.37	0	1868212..1868976	+	254	170081356	ydiQ	ECDH10B_1833	-	hypothetical protein
1694	 53.57	0	1868996..1869934	+	312	170081357	ydiR	ECDH10B_1834	-	electron transfer flavoprotein, FAD-binding
1695	 54.65	0	1869990..1871279	+	429	170081358	ydiS	ECDH10B_1835	-	oxidoreductase
1696	 47.96	0	1871276..1871569	+	97	170081359	ydiT	ECDH10B_1836	-	4Fe-4S ferredoxin-type protein
1697	 49.85	0	1871572..1873272	+	566	170081360	ydiD	ECDH10B_1837	-	short chain acyl-CoA synthetase, anaerobic
1698	 54.64	0	1873329..1875707	-	792	170081361	pps	ECDH10B_1838	-	phosphoenolpyruvate synthase
1699	 51.32	0	1876040..1876873	+	277	170081362	ydiA	ECDH10B_1839	-	hypothetical protein
1700	 53.10	0	1877030..1878076	+	348	170081363	aroH	ECDH10B_1840	-	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible
1701	 50.52	0	1878208..1878399	+	63	170081364	ydiE	ECDH10B_1841	-	hypothetical protein
1702	 52.82	0	1878403..1879839	-	478	170081365	ydiU	ECDH10B_1842	-	hypothetical protein
1703	 42.30	-1	1879902..1880615	-	237	170081366	ydiV	ECDH10B_1843	-	hypothetical protein
1704	 49.68	0	1880862..1881326	-	154	170081367	nlpC	ECDH10B_1844	-	lipoprotein
1705	 55.20	0	1881404..1882153	-	249	170081368	btuD	ECDH10B_1845	-	vitamin B12 ABC transporter ATP-binding protein
1706	 49.46	0	1882153..1882704	-	183	170081369	btuE	ECDH10B_1846	-	glutathione peroxidase
1707	 55.45	0	1882767..1883747	-	326	170081370	btuC	ECDH10B_1847	-	vitamin B12 ABC transporter membrane protein
1708	 50.00	0	1883848..1884147	-	99	170081371	ihfA	ECDH10B_1848	-	integration host factor (IHF), DNA-binding protein, alpha subunit
1709	 54.36	0	1884152..1886539	-	795	170081372	pheT	ECDH10B_1849	-	phenylalanine tRNA synthetase, beta subunit
1710	 53.86	0	1886554..1887537	-	327	170081373	pheS	ECDH10B_1850	-	phenylalanine tRNA synthetase, alpha subunit
1711	 35.56	-2	1887821..1887865	-	14	170081374	pheM	ECDH10B_1851	-	phenylalanyl-tRNA synthetase operon leader peptide
1712	 48.18	0	1887988..1888344	-	118	170081375	rplT	ECDH10B_1852	-	50S ribosomal subunit protein L20
1713	 50.00	0	1888397..1888594	-	65	170081376	rpmI	ECDH10B_1853	-	50S ribosomal subunit protein L35
1714	 49.56	0	1889237..1891165	-	642	170081377	thrS	ECDH10B_1855	-	threonyl-tRNA synthetase
1715	 48.78	0	1893745..1893867	+	40	170081378	yniD	ECDH10B_1859	-	hypothetical protein
1716	 49.41	0	1893920..1894678	-	252	170081379	ydiY	ECDH10B_1860	-	hypothetical protein
1717	 54.09	0	1894965..1895894	+	309	170081380	pfkB	ECDH10B_1861	-	6-phosphofructokinase II
1718	 43.30	-1	1895995..1896285	+	96	170081381	ydiZ	ECDH10B_1862	-	hypothetical protein
1719	 51.92	0	1896391..1897251	+	286	170081382	yniA	ECDH10B_1863	-	phosphotransferase/kinase
1720	 43.95	-1	1897292..1897828	-	178	170081383	yniB	ECDH10B_1864	-	inner membrane protein
1721	 51.72	0	1897975..1898643	+	222	170081384	yniC	ECDH10B_1865	-	hydrolase
1722	 51.27	0	1898806..1899396	+	196	170081385	ydjM	ECDH10B_1866	-	inner membrane protein regulated by LexA
1723	 52.44	0	1899529..1900920	+	463	170081386	ydjN	ECDH10B_1867	-	transporter
1724	 35.54	-2	1900924..1901739	-	271	170081387	ydjO	ECDH10B_1868	-	hypothetical protein
1725	 51.52	0	1902016..1902279	-	87	170081388	cedA	ECDH10B_1869	-	cell division modulator
1726	 52.08	0	1902462..1904723	+	753	170081389	katE	ECDH10B_1870	-	hydroperoxidase HPII(III) (catalase)
1727	 51.47	0	1904981..1905730	-	249	170081390	chbG	ECDH10B_1871	-	hypothetical protein
1728	 46.78	0	1905743..1907095	-	450	170081391	chbF	ECDH10B_1872	-	cryptic phospho-beta-glucosidase, NAD(P)-binding
1729	 41.52	-2	1907200..1908042	-	280	170081392	chbR	ECDH10B_1873	-	DNA-binding transcriptional dual regulator
1730	 49.86	0	1908050..1908400	-	116	170081393	chbA	ECDH10B_1874	-	N,N'-diacetylchitobiose-specific enzyme IIA component of PTS
1731	 49.23	0	1908451..1909809	-	452	170081394	chbC	ECDH10B_1875	-	N,N'-diacetylchitobiose-specific enzyme IIC component of PTS
1732	 43.93	-1	1909894..1910214	-	106	170081395	chbB	ECDH10B_1876	-	N,N'-diacetylchitobiose-specific enzyme IIB component of PTS
1733	 49.56	0	1910513..1910851	-	112	170081396	osmE	ECDH10B_1877	-	DNA-binding transcriptional activator
1734	 49.52	0	1911053..1911880	+	275	170081397	nadE	ECDH10B_1878	-	NAD synthetase, NH3/glutamine-dependent
1735	 51.58	0	1912110..1912997	+	295	170081398	cho	ECDH10B_1879	-	endonuclease of nucleotide excision repair
1736	 51.91	0	1912957..1913532	-	191	170081399	ydjR	ECDH10B_1880	-	hypothetical protein
1737	 50.82	0	1913735..1914220	-	161	170081400	spy	ECDH10B_1881	-	envelope stress induced periplasmic protein
1738	 53.35	0	1914550..1915518	-	322	170081401	astE	ECDH10B_1882	-	succinylglutamate desuccinylase
1739	 55.58	0	1915511..1916854	-	447	170081402	astB	ECDH10B_1883	-	succinylarginine dihydrolase
1740	 58.08	+1	1916851..1918329	-	492	170081403	astD	ECDH10B_1884	-	succinylglutamic semialdehyde dehydrogenase
1741	 56.04	+1	1918326..1919360	-	344	170081404	astA	ECDH10B_1885	-	arginine succinyltransferase
1742	 55.04	0	1919357..1920577	-	406	170081405	astC	ECDH10B_1886	-	succinylornithine transaminase, PLP-dependent
1743	 53.41	0	1921023..1921829	+	268	170081406	xthA	ECDH10B_1887	-	exonuclease III
1744	 48.10	0	1921996..1922706	+	236	170081407	ydjX	ECDH10B_1888	-	inner membrane protein
1745	 48.38	0	1922711..1923388	+	225	170081408	ydjY	ECDH10B_1889	-	hypothetical protein
1746	 51.55	0	1923403..1924110	+	235	170081409	ydjZ	ECDH10B_1890	-	inner membrane protein
1747	 56.28	+1	1924110..1924658	+	182