version 1.0
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137 4126 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 116 50.00 0 131357..131836 - 159 170079779 folK ECDH10B_0122 - 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase 117 55.87 0 131833..133230 - 465 170079780 pcnB ECDH10B_0123 - poly(A) polymerase I 118 53.61 0 133290..134216 - 308 170079781 yadB ECDH10B_0124 - glutamyl-Q tRNA(Asp) synthetase 119 52.63 0 134253..134708 - 151 170079782 dksA ECDH10B_0125 - DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein 120 49.36 0 134886..135590 - 234 170079783 sfsA ECDH10B_0126 - DNA-binding transcriptional regulator 121 55.93 +1 135605..136135 - 176 170079784 ligT ECDH10B_0127 - 2'-5' RNA ligase 122 56.58 +1 136209..138638 + 809 170079785 hrpB ECDH10B_0128 - ATP-dependent helicase 123 55.15 0 138834..141368 + 844 170079786 mrcB ECDH10B_0129 - bifunctional glycosyl transferase and transpeptidase 124 51.20 0 141588..143831 + 747 170079787 fhuA ECDH10B_0130 - ferrichrome outer membrane transporter 125 56.89 +1 143882..144679 + 265 170079788 fhuC ECDH10B_0131 - ATP-binding component of iron-hydroxamate transporter 126 54.66 0 144679..145569 + 296 170079789 fhuD ECDH10B_0132 - iron-hydroxamate ABC transporter periplasmic-binding component 127 59.76 +1 145566..147548 + 660 170079790 fhuB ECDH10B_0133 - iron-hydroxamate ABC transporter membrane protein 128 55.50 0 147706..148986 - 426 170079791 hemL ECDH10B_0134 - glutamate-1-semialdehyde aminotransferase (aminomutase) 129 53.87 0 149211..150632 + 473 170079792 clcA ECDH10B_0135 - chloride channel, voltage-gated 130 50.72 0 150714..151058 + 114 170079793 yadR ECDH10B_0136 - hypothetical protein 131 53.69 0 151105..151728 - 207 170079794 yadS ECDH10B_0137 - inner membrane protein 132 52.93 0 151766..152566 - 266 170079795 btuF ECDH10B_0138 - periplasmic binding component of cobalamin (vitamin B-12) transporter 133 52.36 0 152559..153257 - 232 170079796 pfs ECDH10B_0139 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 134 47.96 0 153341..154858 + 505 170079797 dgt ECDH10B_0140 - deoxyguanosine triphosphate triphosphohydrolase 135 53.96 0 154988..156412 + 474 170079798 degP ECDH10B_0141 - serine endoprotease (protease Do), membrane-associated 136 52.85 0 156567..157724 + 385 170079799 cdaR ECDH10B_0142 - DNA-binding transcriptional activator 137 44.44 -1 157813..158199 - 128 170079800 yaeH ECDH10B_0143 - hypothetical protein 138 51.41 0 158361..159173 - 270 170079801 yaeI ECDH10B_0144 - phosphatase 139 53.09 0 159227..160051 - 274 170079802 dapD ECDH10B_0145 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 140 53.95 0 160082..162754 - 890 170079803 glnD ECDH10B_0146 - uridylyltransferase/uridylyl-removing enzyme 141 50.44 0 162816..163610 - 264 170079804 map ECDH10B_0147 - methionine aminopeptidase 142 51.38 0 163978..164703 + 241 170079805 rpsB ECDH10B_0149 - 30S ribosomal subunit protein S2 143 49.88 0 164961..165812 + 283 170079806 tsf ECDH10B_0150 - protein chain elongation factor EF-Ts 144 52.75 0 165959..166684 + 241 170079807 pyrH ECDH10B_0151 - uridylate kinase 145 50.90 0 166976..167533 + 185 170079808 frr ECDH10B_0152 - ribosome recycling factor 146 52.63 0 167625..168821 + 398 170079809 dxr ECDH10B_0153 - 1-deoxy-d-xylulose 5-phosphate reductoisomerase 147 50.00 0 169007..169768 + 253 170079810 ispU ECDH10B_0154 - undecaprenyl pyrophosphate synthase 148 50.82 0 169781..170638 + 285 170079811 cdsA ECDH10B_0155 - CDP-diglyceride synthase 149 50.92 0 170650..172002 + 450 170079812 rseP ECDH10B_0156 - inner membrane zinc RIP metalloprotease 150 50.68 0 172032..174464 + 810 170079813 ecfK ECDH10B_0157 - hypothetical protein 151 50.21 0 174586..175071 + 161 170079814 skp ECDH10B_0158 - periplasmic chaperone 152 52.83 0 175075..176100 + 341 170079815 lpxD ECDH10B_0159 - UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase 153 50.44 0 176205..176660 + 151 170079816 fabZ ECDH10B_0160 - (3R)-hydroxymyristol acyl carrier protein dehydratase 154 53.11 0 176664..177452 + 262 170079817 lpxA ECDH10B_0161 - UDP-N-acetylglucosamine acetyltransferase 155 53.79 0 177452..178600 + 382 170079818 lpxB ECDH10B_0162 - tetraacyldisaccharide-1-P synthase 156 57.29 +1 178597..179193 + 198 170079819 rnhB ECDH10B_0163 - ribonuclease HII, degrades RNA of DNA-RNA hybrids 157 54.95 0 179230..182712 + 1160 170079820 dnaE ECDH10B_0164 - DNA polymerase III alpha subunit 158 52.29 0 182725..183684 + 319 170079821 accA ECDH10B_0165 - acetyl-CoA carboxylase, carboxytransferase, alpha subunit 159 50.89 0 183783..185924 + 713 170079822 ldcC ECDH10B_0166 - lysine decarboxylase 2, constitutive 160 50.51 0 185981..186370 + 129 170079823 yaeR ECDH10B_0167 - lyase 161 58.04 +1 186435..187733 + 432 170079824 tilS ECDH10B_0168 - tRNA(Ile)-lysidine synthetase 162 47.84 0 187782..188036 - 84 170079825 rof ECDH10B_0169 - modulator of Rho-dependent transcription termination 163 50.75 0 188029..188229 - 66 170079826 yaeP ECDH10B_0170 - hypothetical protein 164 52.38 0 188395..188940 + 181 170079827 yaeQ ECDH10B_0171 - hypothetical protein 165 54.14 0 188937..189359 + 140 170079828 yaeJ ECDH10B_0172 - hypothetical protein 166 52.32 0 189373..190083 + 236 170079829 nlpE ECDH10B_0173 - lipoprotein involved with copper homeostasis and adhesion 167 49.33 0 190283..191107 - 274 170079830 yaeF ECDH10B_0174 - lipoprotein 168 54.51 0 191161..192879 - 572 170079831 proS ECDH10B_0175 - prolyl-tRNA synthetase 169 55.23 0 192991..193698 - 235 170079832 yaeB ECDH10B_0176 - hypothetical protein 170 53.33 0 193695..194099 - 134 170079833 rcsF ECDH10B_0177 - outer membrane protein, signal 171 49.14 0 194217..195032 - 271 170079834 metQ ECDH10B_0178 - receptor component of DL-methionine uptake transporter (MUT) 172 52.29 0 195072..195725 - 217 170079835 metI ECDH10B_0179 - membrane component of DL-methionine uptake transporter (MUT) 173 52.91 0 195718..196749 - 343 170079836 metN ECDH10B_0180 - ATP-binding component of DL-methionine uptake transporter (MUT) 174 50.17 0 196937..197512 + 191 170079837 gmhB ECDH10B_0181 - D,D-heptose 1,7-bisphosphate phosphatase 175 46.27 -1 203271..204074 + 267 170079838 dkgB ECDH10B_0188 - 2,5-diketo-D-gluconate reductase B 176 49.62 0 204071..204985 - 304 170079839 yafC ECDH10B_0189 - DNA-binding transcriptional regulator 177 52.68 0 205226..206026 + 266 170079840 yafD ECDH10B_0190 - hypothetical protein 178 49.04 0 206030..206653 + 207 170079841 yafE ECDH10B_0191 - S-adenosyl-L-methionine-dependent methyltransferase 179 51.95 0 206701..208059 - 452 170079842 mltD ECDH10B_0192 - membrane-bound lytic murein transglycosylase D 180 40.21 -2 208131..208886 - 251 170079843 gloB ECDH10B_0193 - hydroxyacylglutathione hydrolase 181 49.38 0 208920..209642 + 240 170079844 yafS ECDH10B_0194 - S-adenosyl-L-methionine-dependent methyltransferase 182 50.43 0 209639..210106 - 155 170079845 rnhA ECDH10B_0195 - ribonuclease HI, degrades RNA of DNA-RNA hybrids 183 50.14 0 210171..210902 + 243 170079846 dnaQ ECDH10B_0196 - DNA polymerase III epsilon subunit 184 42.75 -1 211439..212224 + 261 170079847 yafT ECDH10B_0198 - aminopeptidase 185 54.73 0 213523..214293 - 256 170079848 yafV ECDH10B_0201 - C-N hydrolase family amidase, NAD(P)-binding 186 50.00 0 214447..214920 + 157 170079849 ivy ECDH10B_0202 - inhibitor of vertebrate C-lysozyme 187 56.89 +1 214963..217407 - 814 170079850 fadE ECDH10B_0203 - acyl coenzyme A dehydrogenase 188 50.95 0 217647..218225 + 192 170079851 lpcA ECDH10B_0204 - D-sedoheptulose 7-phosphate isomerase 189 53.65 0 218431..219198 + 255 170079852 yafJ ECDH10B_0205 - amidotransfease 190 48.45 0 219169..219909 - 246 170079853 yafK ECDH10B_0206 - hypothetical protein 191 39.43 -2 220065..220343 - 92 170079854 yafQ ECDH10B_0207 - toxin of the YafQ-DinJ toxin-antitoxin system 192 46.74 0 220346..220606 - 86 170079855 dinJ ECDH10B_0208 - antitoxin of YafQ-DinJ toxin-antitoxin system 193 52.27 0 220816..221565 + 249 170079856 yafL ECDH10B_0209 - C40 family peptidase 194 44.78 -1 221741..222238 + 165 170079857 yafM ECDH10B_0210 - hypothetical protein 195 54.17 0 225002..226057 + 351 170079858 dinB ECDH10B_0213 - DNA polymerase IV 196 42.18 -1 226109..226402 + 97 170079859 yafN ECDH10B_0214 - antitoxin of the YafO-YafN toxin-antitoxin system 197 43.61 -1 226405..226803 + 132 170079860 yafO ECDH10B_0215 - toxin of the YafO-YafN toxin-antitoxin system 198 43.27 -1 226813..227265 + 150 170079861 yafP ECDH10B_0216 - acyltransferase 199 51.37 0 228363..229820 - 485 170079862 pepD ECDH10B_0219 - aminoacyl-histidine dipeptidase (peptidase D) 200 51.85 0 230081..230539 + 152 170079863 gpt ECDH10B_0220 - guanine-xanthine phosphoribosyltransferase 201 53.65 0 230631..231875 + 414 170079864 frsA ECDH10B_0221 - fermentation/respiration switch protein 202 50.50 0 231933..232334 + 133 170079865 crl ECDH10B_0222 - DNA-binding transcriptional regulator 203 44.70 -1 232373..233428 - 351 170079866 phoE ECDH10B_0223 - outer membrane phosphoporin protein E 204 56.25 +1 233716..234819 + 367 170079867 proB ECDH10B_0224 - gamma-glutamate kinase 205 54.31 0 234831..236084 + 417 170079868 proA ECDH10B_0225 - gamma-glutamylphosphate reductase 206 51.17 0 236656..236997 - 113 170079869 ykfI ECDH10B_0227 - CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system 207 56.92 +1 237018..237335 - 105 170079870 yafW ECDH10B_0228 - CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system 208 55.86 0 237354..237575 - 73 170079871 ykfH ECDH10B_0229 - hypothetical protein 209 58.49 +1 237584..238060 - 158 170079872 ykfG ECDH10B_0230 - CP4-6 prophage; DNA repair protein 210 55.56 0 238076..238534 - 152 170079873 yafX ECDH10B_0231 - CP4-6 prophage; hypothetical protein 211 58.75 +1 238632..238871 - 79 170079874 ykfF ECDH10B_0232 - CP4-6 prophage; hypothetical protein 212 52.56 0 238948..239415 - 155 170079875 ykfB ECDH10B_0233 - CP4-6 prophage; hypothetical protein 213 50.68 0 239438..239881 - 147 170079876 yafY ECDH10B_0234 - CP4-6 prophage; inner membrane lipoprotein 214 57.79 +1 240512..241333 - 273 170079877 yafZ ECDH10B_0237 - CP4-6 prophage; hypothetical protein 215 56.83 +1 241425..242288 - 287 170079878 ykfA ECDH10B_0238 - CP4-6 prophage; GTP-binding protein 51.13 MEAN 4.76 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0