IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1250	 54.93	0	1373966..1375558	+	530	170080913	B	ECDH10B_1349	-	head portal protein
1251	 56.03	+1	1375539..1376882	+	447	170080914	C	ECDH10B_1350	-	head protein
1252	 55.26	0	1376892..1377224	+	110	170080915	D	ECDH10B_1351	-	head decoration protein; major capsid protein
1253	 50.53	0	1378249..1378719	+	156	170080916	cynS	ECDH10B_1353	-	cyanate aminohydrolase
1254	 58.70	+1	1378752..1379906	+	384	170080917	cynX	ECDH10B_1354	-	cyanate transporter
1255	 42.81	-1	1380009..1380620	-	203	170080918	lacA	ECDH10B_1355	-	thiogalactoside acetyltransferase
1256	 46.33	-1	1380686..1381939	-	417	170080919	lacY	ECDH10B_1356	-	lactose/galactose transporter
1257	 56.33	+1	1385095..1386177	-	360	170080920	lacI	ECDH10B_1357	-	DNA-binding transcriptional repressor
1258	 53.69	0	1386254..1387201	-	315	170080921	mhpR	ECDH10B_1358	-	DNA-binding transcriptional activator, 3HPP-binding
1259	 57.00	+1	1387278..1388942	+	554	170080922	mhpA	ECDH10B_1359	-	3-(3-hydroxyphenyl)propionate hydroxylase
1260	 57.78	+1	1388944..1389888	+	314	170080923	mhpB	ECDH10B_1360	-	2,3-dihydroxyphenylpropionate 1,2-dioxygenase
1261	 54.54	0	1389891..1390772	+	293	170080924	mhpC	ECDH10B_1361	-	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase
1262	 34.33	-2	1391119..1393215	-	698	170080925	tnpX	ECDH10B_1362	-	hypothetical protein
1263	 44.57	-1	1393231..1393782	-	183	170080926	tnpR	ECDH10B_1363	-	resolvase
1264	 48.45	0	1393946..1396954	+	1002	170080927	tnpA	ECDH10B_1364	-	transposase
1265	 49.16	0	1397989..1398285	-	98	170080928	yciI	ECDH10B_1366	-	hypothetical protein
1266	 54.44	0	1398509..1399228	+	239	170080929	tonB	ECDH10B_1367	-	membrane spanning protein in TonB-ExbB-ExbD complex
1267	 48.37	0	1399268..1399666	-	132	170080930	yciA	ECDH10B_1368	-	hydrolase
1268	 46.48	0	1399771..1400310	-	179	170080931	yciB	ECDH10B_1369	-	inner membrane protein
1269	 49.33	0	1400340..1401083	-	247	170080932	yciC	ECDH10B_1370	-	inner membrane protein
1270	 50.08	0	1401440..1402078	+	212	170080933	ompW	ECDH10B_1371	-	outer membrane protein W
1271	 40.63	-2	1402138..1402644	-	168	170080934	yciE	ECDH10B_1372	-	hypothetical protein
1272	 43.11	-1	1402690..1403190	-	166	170080935	yciF	ECDH10B_1373	-	hypothetical protein
1273	 51.11	0	1403276..1403455	-	59	170080936	yciG	ECDH10B_1374	-	hypothetical protein
1274	 53.53	0	1403836..1404642	-	268	170080937	trpA	ECDH10B_1375	-	tryptophan synthase, alpha subunit
1275	 54.69	0	1404642..1405835	-	397	170080938	trpB	ECDH10B_1376	-	tryptophan synthase, beta subunit
1276	 52.83	0	1405847..1407205	-	452	170080939	trpC	ECDH10B_1377	-	fused indole-3-glycerolphosphate synthetase; N-(5-phosphoribosyl)anthranilate isomerase
1277	 56.39	+1	1407209..1408804	-	531	170080940	trpD	ECDH10B_1378	-	fused glutamine amidotransferase (component II) of anthranilate synthase; anthranilate phosphoribosyl transferase
1278	 54.38	0	1408804..1410366	-	520	170080941	trpE	ECDH10B_1379	-	component I of anthranilate synthase
1279	 44.44	-1	1410458..1410502	-	14	170080942	trpL	ECDH10B_1380	-	trp operon leader peptide
1280	 54.08	0	1410640..1411521	+	293	170080943	trpH	ECDH10B_1381	-	hypothetical protein
1281	 48.15	0	1411518..1412138	+	206	170080944	yciO	ECDH10B_1382	-	hypothetical protein
1282	 46.99	0	1412166..1414061	+	631	170080945	yciQ	ECDH10B_1383	-	inner membrane protein
1283	 53.77	0	1414272..1415147	+	291	170080946	rluB	ECDH10B_1384	-	23S rRNA pseudouridylate synthase
1284	 50.25	0	1415187..1415777	-	196	170080947	btuR	ECDH10B_1385	-	cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase
1285	 52.44	0	1415774..1416532	-	252	170080948	yciK	ECDH10B_1386	-	oxoacyl-(acyl carrier protein) reductase, EmrKY-TolC system
1286	 50.57	0	1416752..1417801	+	349	170080949	sohB	ECDH10B_1387	-	inner membrane peptidase
1287	 47.22	0	1417837..1418088	-	83	170080950	yciN	ECDH10B_1388	-	hypothetical protein
1288	 51.73	0	1418468..1421065	+	865	170080951	topA	ECDH10B_1389	-	DNA topoisomerase I, omega subunit
1289	 48.31	0	1421275..1422249	+	324	170080952	cysB	ECDH10B_1390	-	DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding
1290	 49.61	0	1422580..1422708	+	42	170080953	ymiA	ECDH10B_1391	-	hypothetical protein
1291	 45.83	-1	1422711..1422878	+	55	170080954	yciX	ECDH10B_1392	-	hypothetical protein
1292	 52.95	0	1423251..1425926	+	891	170080955	acnA	ECDH10B_1393	-	aconitate hydratase 1
1293	 50.08	0	1425990..1426580	-	196	170080956	ribA	ECDH10B_1394	-	GTP cyclohydrolase II
1294	 50.59	0	1426750..1427514	+	254	170080957	pgpB	ECDH10B_1395	-	phosphatidylglycerophosphatase B
1295	 50.16	0	1427663..1427971	+	102	170080958	yciS	ECDH10B_1396	-	inner membrane protein
1296	 51.88	0	1427978..1429147	+	389	170080959	yciM	ECDH10B_1397	-	hypothetical protein
1297	 52.98	0	1429341..1430078	+	245	170080960	pyrF	ECDH10B_1398	-	orotidine-5'-phosphate decarboxylase
1298	 49.85	0	1430078..1430404	+	108	170080961	yciH	ECDH10B_1399	-	hypothetical protein
1299	 52.05	0	1430530..1430748	-	72	170080962	osmB	ECDH10B_1400	-	lipoprotein
1300	 48.80	0	1431017..1431766	-	249	170080963	yciT	ECDH10B_1401	-	DNA-binding transcriptional regulator
1301	 48.49	0	1432177..1434162	-	661	170080964	gmr	ECDH10B_1402	-	modulator of RNase II stability
1302	 53.23	0	1434398..1436332	-	644	170080965	rnb	ECDH10B_1403	-	ribonuclease II
1303	 50.80	0	1436400..1437527	-	375	170080966	yciW	ECDH10B_1404	-	oxidoreductase
1304	 53.23	0	1437671..1438459	-	262	170080967	fabI	ECDH10B_1405	-	enoyl-[acyl-carrier-protein] reductase, NADH-dependent
1305	 49.72	0	1438827..1439180	-	117	170080968	ycjD	ECDH10B_1406	-	hypothetical protein
1306	 51.18	0	1439248..1440054	-	268	170080969	sapF	ECDH10B_1407	-	antibiotic ABC transporter ATP-binding protein
1307	 51.36	0	1440056..1441048	-	330	170080970	sapD	ECDH10B_1408	-	antibiotic ABC transporter ATP-binding protein
1308	 56.90	+1	1441048..1441938	-	296	170080971	sapC	ECDH10B_1409	-	antibiotic ABC transporter transmembrane protein
1309	 51.45	0	1441925..1442890	-	321	170080972	sapB	ECDH10B_1410	-	antibiotic ABC transporter transmembrane protein
1310	 54.26	0	1442887..1444530	-	547	170080973	sapA	ECDH10B_1411	-	antibiotic ABC transporter periplasmic-binding protein
1311	 48.37	0	1444843..1445088	-	81	170080974	ymjA	ECDH10B_1412	-	hypothetical protein
1312	 53.39	0	1445222..1446607	-	461	170080975	puuP	ECDH10B_1413	-	putrescine importer
1313	 53.49	0	1446910..1448328	-	472	170080976	puuA	ECDH10B_1414	-	gamma-Glu-putrescine synthase
1314	 52.29	0	1448540..1449304	+	254	170080977	puuD	ECDH10B_1415	-	gamma-Glu-GABA hydrolase
1315	 50.90	0	1449331..1449888	+	185	170080978	puuR	ECDH10B_1416	-	DNA-binding transcriptional repressor
1316	 57.33	+1	1450163..1451650	+	495	170080979	puuC	ECDH10B_1417	-	gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent
1317	 58.24	+1	1451652..1452932	+	426	170080980	puuB	ECDH10B_1418	-	gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding
1318	 57.66	+1	1452970..1454235	+	421	170080981	puuE	ECDH10B_1419	-	GABA aminotransferase, PLP-dependent
1319	 51.74	0	1454355..1455332	-	325	170080982	pspF	ECDH10B_1420	-	DNA-binding transcriptional activator
1320	 49.33	0	1455499..1456167	+	222	170080983	pspA	ECDH10B_1421	-	regulatory protein for phage-shock-protein operon
1321	 47.56	0	1456221..1456445	+	74	170080984	pspB	ECDH10B_1422	-	DNA-binding transcriptional regulator of psp operon
1322	 50.28	0	1456445..1456804	+	119	170080985	pspC	ECDH10B_1423	-	DNA-binding transcriptional activator
1323	 54.50	0	1456813..1457034	+	73	170080986	pspD	ECDH10B_1424	-	peripheral inner membrane phage-shock protein
1324	 50.79	0	1457109..1457423	+	104	170080987	pspE	ECDH10B_1425	-	thiosulfate:cyanide sulfurtransferase (rhodanese)
1325	 43.87	-1	1457636..1459315	+	559	170080988	ycjM	ECDH10B_1426	-	glucosyltransferase
1326	 50.04	0	1459329..1460621	+	430	170080989	ycjN	ECDH10B_1427	-	sugar ABC transporter periplasmic-binding protein
1327	 53.63	0	1460642..1461523	+	293	170080990	ycjO	ECDH10B_1428	-	sugar ABC transporter membrane protein
1328	 52.79	0	1461510..1462352	+	280	170080991	ycjP	ECDH10B_1429	-	sugar ABC transporter membrane protein
1329	 55.75	0	1462383..1463435	+	350	170080992	ycjQ	ECDH10B_1430	-	oxidoreductase, Zn-dependent and NAD(P)-binding
1330	 53.61	0	1463454..1464242	+	262	170080993	ycjR	ECDH10B_1431	-	hypothetical protein
1331	 54.73	0	1464252..1465307	+	351	170080994	ycjS	ECDH10B_1432	-	oxidoreductase, NADH-binding
1332	 53.75	0	1465304..1467571	+	755	170080995	ycjT	ECDH10B_1433	-	hydrolase
1333	 56.52	+1	1467568..1468227	+	219	170080996	ycjU	ECDH10B_1434	-	beta-phosphoglucomutase
1334	 49.89	0	1469367..1470272	+	301	170080997	ompG	ECDH10B_1438	-	outer membrane porin
1335	 45.45	-1	1470383..1471381	-	332	170080998	ycjW	ECDH10B_1439	-	DNA-binding transcriptional regulator
1336	 54.43	0	1471537..1472934	+	465	170080999	ycjX	ECDH10B_1440	-	hypothetical protein
1337	 56.31	+1	1472931..1473992	+	353	170081000	ycjF	ECDH10B_1441	-	inner membrane protein
1338	 52.14	0	1474140..1475681	+	513	170081001	tyrR	ECDH10B_1442	-	DNA-binding transcriptional dual regulator, tyrosine-binding
1339	 51.28	0	1475725..1476231	-	168	170081002	tpx	ECDH10B_1443	-	lipid hydroperoxide peroxidase
1340	 54.66	0	1476350..1477315	+	321	170081003	ycjG	ECDH10B_1444	-	L-Ala-D/L-Glu epimerase
1341	 53.87	0	1477290..1478078	-	262	170081004	mpaA	ECDH10B_1445	-	murein peptide amidase A
1342	 39.89	-2	1478100..1478282	-	60	170081005	ymjC	ECDH10B_1446	-	oxidoreductase
1343	 48.02	0	1478353..1479285	-	310