version 1.0
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137 4126 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1154 56.27 +1 1277035..1278333 + 432 170080817 dadA ECDH10B_1242 - D-amino acid dehydrogenase 1155 57.98 +1 1278343..1279413 + 356 170080818 dadX ECDH10B_1243 - alanine racemase 2, PLP-binding 1156 52.33 0 1279799..1281535 - 578 170080819 cvrA ECDH10B_1244 - cation/proton antiporter 1157 53.01 0 1281630..1282544 - 304 170080820 ldcA ECDH10B_1245 - L,D-carboxypeptidase A 1158 51.96 0 1282644..1283255 + 203 170080821 emtA ECDH10B_1246 - lytic murein endotransglycosylase E 1159 50.75 0 1283257..1283991 - 244 170080822 ycgR ECDH10B_1247 - YcgR 1160 53.33 0 1284192..1284446 + 84 170080823 ymgE ECDH10B_1248 - inner membrane protein 1161 41.50 -2 1284624..1285064 + 146 170080824 ycgY ECDH10B_1249 - hypothetical protein 1162 52.30 0 1285143..1286840 - 565 170080825 treA ECDH10B_1250 - periplasmic trehalase 1163 50.18 0 1287160..1288578 - 472 170080826 dhaM ECDH10B_1251 - fused dihydroxyacetone-specific PTS enzymes: HPr component; EI component 1164 53.55 0 1288589..1289221 - 210 170080827 dhaL ECDH10B_1252 - dihydroxyacetone kinase C-terminal domain-containing protein 1165 53.03 0 1289232..1290302 - 356 170080828 dhaK ECDH10B_1253 - dihydroxyacetone kinase N-terminal domain-containing protein 1166 51.46 0 1290530..1292449 + 639 170080829 dhaR ECDH10B_1254 - DNA-binding transcriptional regulator, dihydroxyacetone 1167 49.79 0 1292549..1295416 - 955 170080830 ycgV ECDH10B_1255 - adhesin 1168 51.01 0 1296185..1297276 - 363 170080831 ychF ECDH10B_1256 - GTP-binding protein 1169 49.74 0 1297393..1297977 - 194 170080832 pth ECDH10B_1257 - peptidyl-tRNA hydrolase 1170 53.05 0 1298255..1298533 + 92 170080833 ychH ECDH10B_1258 - inner membrane protein 1171 54.64 0 1298588..1300267 - 559 170080834 ychM ECDH10B_1259 - transporter 1172 52.53 0 1300392..1301339 - 315 170080835 prsA ECDH10B_1260 - phosphoribosylpyrophosphate synthase 1173 53.40 0 1301490..1302341 - 283 170080836 ispE ECDH10B_1261 - 4-diphosphocytidyl-2-C-methylerythritol kinase 1174 51.44 0 1302341..1302964 - 207 170080837 lolB ECDH10B_1262 - chaperone for lipoproteins 1175 54.34 0 1303178..1304434 + 418 170080838 hemA ECDH10B_1263 - glutamyl tRNA reductase 1176 53.00 0 1304476..1305558 + 360 170080839 prfA ECDH10B_1264 - peptide chain release factor RF-1 1177 55.16 0 1305558..1306391 + 277 170080840 prmC ECDH10B_1265 - release factors RF-1 and RF-2 N5-glutamine methyltransferase 1178 47.58 0 1306388..1306780 + 130 170080841 ychQ ECDH10B_1266 - transcriptional regulator 1179 46.42 0 1306784..1307593 + 269 170080842 ychA ECDH10B_1267 - transcriptional regulator 1180 51.58 0 1307629..1308483 + 284 170080843 kdsA ECDH10B_1268 - 3-deoxy-D-manno-octulosonate 8-phosphate synthase 1181 55.56 0 1308632..1308739 - 35 170080844 ldrA ECDH10B_1269 - toxic polypeptide, small 1182 58.33 +1 1309167..1309274 - 35 170080845 ldrB ECDH10B_1271 - toxic polypeptide, small 1183 55.56 0 1309702..1309809 - 35 170080846 ldrC ECDH10B_1273 - toxic polypeptide, small 1184 48.77 0 1310213..1311313 - 366 170080847 chaA ECDH10B_1275 - calcium/sodium:proton antiporter 1185 45.45 -1 1311583..1311813 + 76 170080848 chaB ECDH10B_1276 - cation regulator 1186 54.74 0 1311971..1312666 + 231 170080849 chaC ECDH10B_1277 - regulatory protein for cation transport 1187 51.69 0 1312710..1313063 - 117 170080850 ychN ECDH10B_1278 - hypothetical protein 1188 50.54 0 1313248..1314642 + 464 170080851 ychO ECDH10B_1279 - invasin 1189 51.77 0 1314643..1315293 - 216 170080852 narL ECDH10B_1280 - DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) 1190 53.37 0 1315286..1317082 - 598 170080853 narX ECDH10B_1281 - sensory histidine kinase in two-component regulatory system with NarL 1191 53.66 0 1317421..1318812 + 463 170080854 narK ECDH10B_1282 - nitrate/nitrite transporter 1192 54.94 0 1319328..1323071 + 1247 170080855 narG ECDH10B_1283 - nitrate reductase 1, alpha subunit 1193 53.74 0 1323068..1324606 + 512 170080856 narH ECDH10B_1284 - nitrate reductase 1, beta (Fe-S) subunit 1194 56.40 +1 1324603..1325313 + 236 170080857 narJ ECDH10B_1285 - molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1 1195 55.90 +1 1325313..1325990 + 225 170080858 narI ECDH10B_1286 - nitrate reductase 1, gamma (cytochrome b(NR)) subunit 1196 59.42 +1 1326173..1326448 + 91 170080859 ychS ECDH10B_1287 - hypothetical protein 1197 64.44 +2 1326551..1326640 - 29 170080860 tpr ECDH10B_1289 - protamine-like protein 1198 47.21 0 1327246..1328088 - 280 170080861 purU ECDH10B_1292 - formyltetrahydrofolate hydrolase 1199 46.41 0 1328138..1328596 - 152 170080862 ychJ ECDH10B_1293 - hypothetical protein 1200 50.26 0 1328670..1329614 + 314 170080863 rssA ECDH10B_1294 - hypothetical protein 1201 48.62 0 1329706..1330719 + 337 170080864 rssB ECDH10B_1295 - response regulator of RpoS 1202 46.97 0 1330921..1331829 + 302 170080865 galU ECDH10B_1296 - glucose-1-phosphate uridylyltransferase 1203 46.62 0 1331973..1332386 - 137 170080866 hns ECDH10B_1297 - global DNA-binding transcriptional dual regulator H-NS 1204 42.23 -1 1332991..1333608 + 205 170080867 tdk ECDH10B_1298 - thymidine kinase/deoxyuridine kinase 1205 50.64 0 1334910..1337585 - 891 170080868 adhE ECDH10B_1302 - fused acetaldehyde-CoA dehydrogenase and iron-dependent alcohol dehydrogenase and pyruvate-formate lyase deactivase 1206 47.84 0 1338062..1338709 + 215 170080869 ychE ECDH10B_1303 - inner membrane protein 1207 47.73 0 1340224..1341855 + 543 170080870 oppA ECDH10B_1305 - oligopeptide transporter periplasmic subunit 1208 45.71 -1 1341941..1342861 + 306 170080871 oppB ECDH10B_1306 - oligopeptide ABC transporter membrane protein 1209 52.37 0 1342876..1343784 + 302 170080872 oppC ECDH10B_1307 - oligopeptide ABC transporter membrane protein 1210 51.78 0 1343796..1344809 + 337 170080873 oppD ECDH10B_1308 - oligopeptide ABC transporter ATP-binding protein 1211 51.64 0 1344806..1345810 + 334 170080874 oppF ECDH10B_1309 - ATP-binding subunit of oligopeptide ABC transporter 1212 47.27 0 1345863..1346192 - 109 170080875 yciU ECDH10B_1310 - hypothetical protein 1213 51.68 0 1346227..1347687 - 486 170080876 cls ECDH10B_1311 - cardiolipin synthase 1 1214 42.34 -1 1348058..1349311 - 417 170080877 kch ECDH10B_1312 - voltage-gated potassium channel 1215 47.40 0 1349759..1351009 + 416 170080878 int ECDH10B_1313 - integrase 1216 49.49 0 1351006..1351203 - 65 170080879 xis ECDH10B_1314 - excisionase 1217 55.69 0 1351245..1351490 - 81 170080880 - ECDH10B_1315 - hypothetical protein 1218 59.31 +1 1352518..1352952 - 144 170080881 - ECDH10B_1317 - hypothetical protein 1219 55.36 0 1352943..1353623 - 226 170080882 exo ECDH10B_1318 - exonuclease 1220 51.74 0 1353620..1354537 - 305 170080883 bet ECDH10B_1319 - RecT protein 1221 51.06 0 1354547..1354828 - 93 170080884 - ECDH10B_1320 - hypothetical protein 1222 58.51 +1 1354836..1355804 - 322 170080885 - ECDH10B_1321 - hypothetical protein 1223 43.21 -1 1355909..1356799 - 296 170080886 - ECDH10B_1322 - hypothetical protein 1224 57.14 +1 1356756..1356965 - 69 170080887 kil ECDH10B_1323 - prophage Kil protein 1225 53.23 0 1356962..1357162 - 66 170080888 - ECDH10B_1324 - hypothetical protein 1226 45.71 -1 1357122..1357331 - 69 170080889 - ECDH10B_1325 - hypothetical protein 1227 49.83 0 1357487..1357783 - 98 170080890 N ECDH10B_1326 - regulatory protein N 1228 42.10 -1 1358581..1359447 - 288 170080891 40 ECDH10B_1327 - protein 40A 1229 46.84 0 1359584..1360294 - 236 170080892 cI ECDH10B_1328 - repressor protein CI 1230 47.75 0 1360412..1360633 + 73 170080893 30 ECDH10B_1329 - regulatory protein 30 (Cro) 1231 54.64 0 1360808..1361206 + 132 170080894 cII ECDH10B_1330 - regulatory protein CII 1232 50.94 0 1361292..1362200 + 302 170080895 15 ECDH10B_1331 - replication protein 15 (O) 1233 62.46 +2 1362197..1362886 + 229 170080896 14 ECDH10B_1332 - replication protein 14 (P) 1234 56.25 +1 1362950..1363669 + 239 170080897 - ECDH10B_1333 - hypothetical protein 1235 50.40 0 1363842..1364345 + 167 170080898 - ECDH10B_1334 - hypothetical protein 1236 52.91 0 1364512..1365180 + 222 170080899 - ECDH10B_1335 - serine/threonine-protein phosphatase 1237 56.70 +1 1365173..1365814 + 213 170080900 rap ECDH10B_1336 - structure-specific endonuclease 1238 51.23 0 1366130..1366939 + 269 170080901 17 ECDH10B_1337 - prophage antitermination protein 1239 52.00 0 1367418..1367642 + 74 170080902 18 ECDH10B_1338 - lysis S family protein 1240 56.77 +1 1367620..1368114 + 164 170080903 19 ECDH10B_1339 - lysozyme-like protein 1241 53.38 0 1368111..1368569 + 152 170080904 Rz ECDH10B_1340 - Rz lysis protein 1242 52.69 0 1368331..1368516 + 61 170080905 Rz1 ECDH10B_1341 - putative lysis protein 1243 49.55 0 1368732..1369286 + 184 170080906 rha ECDH10B_1342 - Rha protein 1244 40.33 -2 1369358..1369972 - 204 170080907 - ECDH10B_1343 - hypothetical protein 1245 39.83 -2 1369953..1370183 + 76 170080908 - ECDH10B_1344 - putative Fur-regulated protein 1246 50.07 0 1370345..1371073 + 242 170080909 - ECDH10B_1345 - putative Fur-regulated protein 1247 51.10 0 1371321..1371866 + 181 170080910 1 ECDH10B_1346 - phage DNA packaging protein Nu1 1248 52.42 0 1371841..1373763 + 640 170080911 2 ECDH10B_1347 - DNA packaging protein 1249 51.69 0 1373763..1373969 + 68 170080912 W ECDH10B_1348 - head-to-tail joining protein 1250 54.93 0 1373966..1375558 + 530 170080913 B ECDH10B_1349 - head portal protein 1251 56.03 +1 1375539..1376882 + 447 170080914 C ECDH10B_1350 - head protein 1252 55.26 0 1376892..1377224 + 110 170080915 D ECDH10B_1351 - head decoration protein; major capsid protein 1253 50.53 0 1378249..1378719 + 156 170080916 cynS ECDH10B_1353 - cyanate aminohydrolase 51.13 MEAN 4.76 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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