IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1126	 36.79	-2	1252167..1252571	-	134	170080789	ycgX	ECDH10B_1210	-	hypothetical protein
1127	 48.77	0	1252792..1253523	-	243	170080790	ycgE	ECDH10B_1211	-	DNA-binding transcriptional regulator
1128	 43.56	-1	1253728..1254939	-	403	170080791	ycgF	ECDH10B_1212	-	FAD-binding phosphodiesterase
1129	 41.77	-1	1255253..1255489	+	78	170080792	ycgZ	ECDH10B_1213	-	hypothetical protein
1130	 37.00	-2	1255532..1255804	+	90	170080793	ymgA	ECDH10B_1214	-	hypothetical protein
1131	 34.83	-2	1255833..1256099	+	88	170080794	ymgB	ECDH10B_1215	-	hypothetical protein
1132	 35.74	-2	1256212..1256460	+	82	170080795	ymgC	ECDH10B_1216	-	hypothetical protein
1133	 44.62	-1	1256792..1258315	+	507	170080796	ycgG	ECDH10B_1217	-	inner membrane protein
1134	 40.18	-2	1258447..1258665	+	72	170080797	ymgF	ECDH10B_1218	-	hypothetical protein
1135	 45.15	-1	1261769..1262098	-	109	170080798	ymgD	ECDH10B_1222	-	hypothetical protein
1136	 53.26	0	1262108..1262383	-	91	170080799	ymgG	ECDH10B_1223	-	hypothetical protein
1137	 32.18	-2	1262454..1262627	-	57	170080800	ymgI	ECDH10B_1224	-	hypothetical protein
1138	 38.17	-2	1262728..1262913	+	61	170080801	ymgJ	ECDH10B_1225	-	hypothetical protein
1139	 43.45	-1	1263743..1264009	-	88	170080802	minE	ECDH10B_1227	-	cell division topological specificity factor
1140	 49.94	0	1264013..1264825	-	270	170080803	minD	ECDH10B_1228	-	membrane ATPase of the MinC-MinD-MinE system
1141	 51.01	0	1264849..1265544	-	231	170080804	minC	ECDH10B_1229	-	cell division inhibitor
1142	 42.28	-1	1266064..1266432	+	122	170080805	ycgJ	ECDH10B_1230	-	hypothetical protein
1143	 43.03	-1	1266535..1266936	-	133	170080806	ycgK	ECDH10B_1231	-	hypothetical protein
1144	 43.12	-1	1267145..1267471	+	108	170080807	ycgL	ECDH10B_1232	-	hypothetical protein
1145	 51.97	0	1267543..1268202	+	219	170080808	ycgM	ECDH10B_1233	-	isomerase/hydrolase
1146	 47.62	0	1268279..1268740	+	153	170080809	ycgN	ECDH10B_1234	-	hypothetical protein
1147	 41.12	-2	1268947..1269858	-	303	170080810	hlyE	ECDH10B_1235	-	hemolysin E
1148	 48.10	0	1270231..1270650	+	139	170080811	umuD	ECDH10B_1236	-	DNA polymerase V, subunit D
1149	 50.99	0	1270650..1271918	+	422	170080812	umuC	ECDH10B_1237	-	DNA polymerase V, subunit C
1150	 52.73	0	1271964..1272494	-	176	170080813	dsbB	ECDH10B_1238	-	oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
1151	 52.85	0	1272640..1274181	-	513	170080814	nhaB	ECDH10B_1239	-	sodium:proton antiporter
1152	 51.25	0	1274402..1275121	+	239	170080815	fadR	ECDH10B_1240	-	DNA-binding transcriptional dual regulator of fatty acid metabolism
1153	 49.84	0	1275173..1276705	-	510	170080816	ycgB	ECDH10B_1241	-	hypothetical protein
1154	 56.27	+1	1277035..1278333	+	432	170080817	dadA	ECDH10B_1242	-	D-amino acid dehydrogenase
1155	 57.98	+1	1278343..1279413	+	356	170080818	dadX	ECDH10B_1243	-	alanine racemase 2, PLP-binding
1156	 52.33	0	1279799..1281535	-	578	170080819	cvrA	ECDH10B_1244	-	cation/proton antiporter
1157	 53.01	0	1281630..1282544	-	304	170080820	ldcA	ECDH10B_1245	-	L,D-carboxypeptidase A
1158	 51.96	0	1282644..1283255	+	203	170080821	emtA	ECDH10B_1246	-	lytic murein endotransglycosylase E
1159	 50.75	0	1283257..1283991	-	244	170080822	ycgR	ECDH10B_1247	-	YcgR
1160	 53.33	0	1284192..1284446	+	84	170080823	ymgE	ECDH10B_1248	-	inner membrane protein
1161	 41.50	-2	1284624..1285064	+	146	170080824	ycgY	ECDH10B_1249	-	hypothetical protein
1162	 52.30	0	1285143..1286840	-	565	170080825	treA	ECDH10B_1250	-	periplasmic trehalase
1163	 50.18	0	1287160..1288578	-	472	170080826	dhaM	ECDH10B_1251	-	fused dihydroxyacetone-specific PTS enzymes: HPr component; EI component
1164	 53.55	0	1288589..1289221	-	210	170080827	dhaL	ECDH10B_1252	-	dihydroxyacetone kinase C-terminal domain-containing protein
1165	 53.03	0	1289232..1290302	-	356	170080828	dhaK	ECDH10B_1253	-	dihydroxyacetone kinase N-terminal domain-containing protein
1166	 51.46	0	1290530..1292449	+	639	170080829	dhaR	ECDH10B_1254	-	DNA-binding transcriptional regulator, dihydroxyacetone
1167	 49.79	0	1292549..1295416	-	955	170080830	ycgV	ECDH10B_1255	-	adhesin
1168	 51.01	0	1296185..1297276	-	363	170080831	ychF	ECDH10B_1256	-	GTP-binding protein
1169	 49.74	0	1297393..1297977	-	194	170080832	pth	ECDH10B_1257	-	peptidyl-tRNA hydrolase
1170	 53.05	0	1298255..1298533	+	92	170080833	ychH	ECDH10B_1258	-	inner membrane protein
1171	 54.64	0	1298588..1300267	-	559	170080834	ychM	ECDH10B_1259	-	transporter
1172	 52.53	0	1300392..1301339	-	315	170080835	prsA	ECDH10B_1260	-	phosphoribosylpyrophosphate synthase
1173	 53.40	0	1301490..1302341	-	283	170080836	ispE	ECDH10B_1261	-	4-diphosphocytidyl-2-C-methylerythritol kinase
1174	 51.44	0	1302341..1302964	-	207	170080837	lolB	ECDH10B_1262	-	chaperone for lipoproteins
1175	 54.34	0	1303178..1304434	+	418	170080838	hemA	ECDH10B_1263	-	glutamyl tRNA reductase
1176	 53.00	0	1304476..1305558	+	360	170080839	prfA	ECDH10B_1264	-	peptide chain release factor RF-1
1177	 55.16	0	1305558..1306391	+	277	170080840	prmC	ECDH10B_1265	-	release factors RF-1 and RF-2 N5-glutamine methyltransferase
1178	 47.58	0	1306388..1306780	+	130	170080841	ychQ	ECDH10B_1266	-	transcriptional regulator
1179	 46.42	0	1306784..1307593	+	269	170080842	ychA	ECDH10B_1267	-	transcriptional regulator
1180	 51.58	0	1307629..1308483	+	284	170080843	kdsA	ECDH10B_1268	-	3-deoxy-D-manno-octulosonate 8-phosphate synthase
1181	 55.56	0	1308632..1308739	-	35	170080844	ldrA	ECDH10B_1269	-	toxic polypeptide, small
1182	 58.33	+1	1309167..1309274	-	35	170080845	ldrB	ECDH10B_1271	-	toxic polypeptide, small
1183	 55.56	0	1309702..1309809	-	35	170080846	ldrC	ECDH10B_1273	-	toxic polypeptide, small
1184	 48.77	0	1310213..1311313	-	366	170080847	chaA	ECDH10B_1275	-	calcium/sodium:proton antiporter
1185	 45.45	-1	1311583..1311813	+	76	170080848	chaB	ECDH10B_1276	-	cation regulator
1186	 54.74	0	1311971..1312666	+	231	170080849	chaC	ECDH10B_1277	-	regulatory protein for cation transport
1187	 51.69	0	1312710..1313063	-	117	170080850	ychN	ECDH10B_1278	-	hypothetical protein
1188	 50.54	0	1313248..1314642	+	464	170080851	ychO	ECDH10B_1279	-	invasin
1189	 51.77	0	1314643..1315293	-	216	170080852	narL	ECDH10B_1280	-	DNA-binding response regulator in two-component regulatory system with NarX (or NarQ)
1190	 53.37	0	1315286..1317082	-	598	170080853	narX	ECDH10B_1281	-	sensory histidine kinase in two-component regulatory system with NarL
1191	 53.66	0	1317421..1318812	+	463	170080854	narK	ECDH10B_1282	-	nitrate/nitrite transporter
1192	 54.94	0	1319328..1323071	+	1247	170080855	narG	ECDH10B_1283	-	nitrate reductase 1, alpha subunit
1193	 53.74	0	1323068..1324606	+	512	170080856	narH	ECDH10B_1284	-	nitrate reductase 1, beta (Fe-S) subunit
1194	 56.40	+1	1324603..1325313	+	236	170080857	narJ	ECDH10B_1285	-	molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1
1195	 55.90	+1	1325313..1325990	+	225	170080858	narI	ECDH10B_1286	-	nitrate reductase 1, gamma (cytochrome b(NR)) subunit
1196	 59.42	+1	1326173..1326448	+	91	170080859	ychS	ECDH10B_1287	-	hypothetical protein
1197	 64.44	+2	1326551..1326640	-	29	170080860	tpr	ECDH10B_1289	-	protamine-like protein
1198	 47.21	0	1327246..1328088	-	280	170080861	purU	ECDH10B_1292	-	formyltetrahydrofolate hydrolase
1199	 46.41	0	1328138..1328596	-	152	170080862	ychJ	ECDH10B_1293	-	hypothetical protein
1200	 50.26	0	1328670..1329614	+	314	170080863	rssA	ECDH10B_1294	-	hypothetical protein
1201	 48.62	0	1329706..1330719	+	337	170080864	rssB	ECDH10B_1295	-	response regulator of RpoS
1202	 46.97	0	1330921..1331829	+	302	170080865	galU	ECDH10B_1296	-	glucose-1-phosphate uridylyltransferase
1203	 46.62	0	1331973..1332386	-	137	170080866	hns	ECDH10B_1297	-	global DNA-binding transcriptional dual regulator H-NS
1204	 42.23	-1	1332991..1333608	+	205	170080867	tdk	ECDH10B_1298	-	thymidine kinase/deoxyuridine kinase
1205	 50.64	0	1334910..1337585	-	891	170080868	adhE	ECDH10B_1302	-	fused acetaldehyde-CoA dehydrogenase and iron-dependent alcohol dehydrogenase and pyruvate-formate lyase deactivase
1206	 47.84	0	1338062..1338709	+	215	170080869	ychE	ECDH10B_1303	-	inner membrane protein
1207	 47.73	0	1340224..1341855	+	543	170080870	oppA	ECDH10B_1305	-	oligopeptide transporter periplasmic subunit
1208	 45.71	-1	1341941..1342861	+	306	170080871	oppB	ECDH10B_1306	-	oligopeptide ABC transporter membrane protein
1209	 52.37	0	1342876..1343784	+	302	170080872	oppC	ECDH10B_1307	-	oligopeptide ABC transporter membrane protein
1210	 51.78	0	1343796..1344809	+	337	170080873	oppD	ECDH10B_1308	-	oligopeptide ABC transporter ATP-binding protein
1211	 51.64	0	1344806..1345810	+	334	170080874	oppF	ECDH10B_1309	-	ATP-binding subunit of oligopeptide ABC transporter
1212	 47.27	0	1345863..1346192	-	109	170080875	yciU	ECDH10B_1310	-	hypothetical protein
1213	 51.68	0	1346227..1347687	-	486	170080876	cls	ECDH10B_1311	-	cardiolipin synthase 1
1214	 42.34	-1	1348058..1349311	-	417	170080877	kch	ECDH10B_1312	-	voltage-gated potassium channel
1215	 47.40	0	1349759..1351009	+	416	170080878	int	ECDH10B_1313	-	integrase
1216	 49.49	0	1351006..1351203	-	65	170080879	xis	ECDH10B_1314	-	excisionase
1217	 55.69	0	1351245..1351490	-	81	170080880	-	ECDH10B_1315	-	hypothetical protein
1218	 59.31	+1	1352518..1352952	-	144	170080881	-	ECDH10B_1317	-	hypothetical protein
1219	 55.36	0	1352943..1353623	-	226	170080882	exo	ECDH10B_1318