IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1083	 53.30	0	1206607..1207848	+	413	170080746	fabF	ECDH10B_1167	-	3-oxoacyl-[acyl-carrier-protein] synthase II
1084	 50.62	0	1207968..1208777	+	269	170080747	pabC	ECDH10B_1168	-	4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex
1085	 50.73	0	1208780..1209802	+	340	170080748	yceG	ECDH10B_1169	-	aminodeoxychorismate lyase
1086	 54.05	0	1209792..1210433	+	213	170080749	tmk	ECDH10B_1170	-	thymidylate kinase
1087	 54.03	0	1210430..1211434	+	334	170080750	holB	ECDH10B_1171	-	DNA polymerase III, delta prime subunit
1088	 50.88	0	1211445..1212242	+	265	170080751	ycfH	ECDH10B_1172	-	metallodependent hydrolase
1089	 52.65	0	1212537..1213970	+	477	170080752	ptsG	ECDH10B_1173	-	fused glucose-specific PTS enzymes: iibcomponent; IIC component
1090	 50.00	0	1214030..1216219	-	729	170080753	fhuE	ECDH10B_1174	-	ferric-rhodotorulic acid outer membrane transporter
1091	 50.56	0	1216553..1216912	+	119	170080754	hinT	ECDH10B_1175	-	purine nucleoside phosphoramidase
1092	 49.47	0	1216915..1217292	+	125	170080755	ycfL	ECDH10B_1176	-	lipoprotein
1093	 56.39	+1	1217306..1217947	+	213	170080756	ycfM	ECDH10B_1177	-	outer membrane lipoprotein
1094	 53.33	0	1217928..1218752	+	274	170080757	thiK	ECDH10B_1178	-	thiamin kinase
1095	 53.02	0	1218763..1219788	+	341	170080758	nagZ	ECDH10B_1179	-	beta-N-acetylglucosaminidase
1096	 46.59	0	1219811..1220353	+	180	170080759	ycfP	ECDH10B_1180	-	hypothetical protein
1097	 52.95	0	1220753..1222057	+	434	170080760	ndh	ECDH10B_1181	-	respiratory NADH dehydrogenase 2/cupric reductase
1098	 53.70	0	1222267..1222806	+	179	170080761	ycfJ	ECDH10B_1182	-	hypothetical protein
1099	 51.18	0	1222868..1223500	-	210	170080762	ycfQ	ECDH10B_1183	-	DNA-binding transcriptional regulator
1100	 47.29	0	1223741..1223998	+	85	170080763	ycfR	ECDH10B_1184	-	hypothetical protein
1101	 53.37	0	1224080..1225042	-	320	170080764	ycfS	ECDH10B_1185	-	hypothetical protein
1102	 54.77	0	1225186..1228632	-	1148	170080765	mfd	ECDH10B_1186	-	transcription-repair coupling factor
1103	 49.53	0	1228760..1229833	-	357	170080766	ycfT	ECDH10B_1187	-	inner membrane protein
1104	 54.17	0	1230095..1231294	+	399	170080767	lolC	ECDH10B_1188	-	outer membrane-specific lipoprotein ABC transporter membrane protein
1105	 55.13	0	1231287..1231988	+	233	170080768	lolD	ECDH10B_1189	-	outer membrane-specific lipoprotein ABC transporter ATP-binding protein
1106	 51.89	0	1231988..1233232	+	414	170080769	lolE	ECDH10B_1190	-	outer membrane-specific lipoprotein ABC transporter membrane protein
1107	 52.74	0	1233261..1234172	+	303	170080770	nagK	ECDH10B_1191	-	N-acetyl-D-glucosamine kinase
1108	 51.79	0	1234188..1235027	+	279	170080771	cobB	ECDH10B_1192	-	deacetylase of acetyl-CoA synthetase, NAD-dependent
1109	 42.59	-1	1235147..1235935	-	262	170080772	ycfZ	ECDH10B_1193	-	inner membrane protein
1110	 43.51	-1	1235932..1236393	-	153	170080773	ymfA	ECDH10B_1194	-	inner membrane protein
1111	 50.81	0	1236451..1237497	-	348	170080774	potD	ECDH10B_1195	-	polyamine ABC transporter periplasmic-binding protein
1112	 50.19	0	1237494..1238288	-	264	170080775	potC	ECDH10B_1196	-	polyamine ABC transporter transmembrane protein
1113	 50.85	0	1238285..1239112	-	275	170080776	potB	ECDH10B_1197	-	polyamine ABC transporter transmembrane protein
1114	 50.84	0	1239126..1240262	-	378	170080777	potA	ECDH10B_1198	-	polyamine ABC transporter ATP-binding protein
1115	 49.88	0	1240512..1241738	+	408	170080778	pepT	ECDH10B_1199	-	peptidase T
1116	 54.01	0	1241787..1242908	-	373	170080779	ycfD	ECDH10B_1200	-	hypothetical protein
1117	 51.33	0	1242984..1244444	-	486	170080780	phoQ	ECDH10B_1201	-	sensory histidine kinase in two-compoent regulatory system with PhoP
1118	 47.92	0	1244444..1245115	-	223	170080781	phoP	ECDH10B_1202	-	DNA-binding response regulator in two-component regulatory system with PhoQ
1119	 52.30	0	1245284..1246654	-	456	170080782	purB	ECDH10B_1203	-	adenylosuccinate lyase
1120	 57.17	+1	1246658..1247299	-	213	170080783	hflD	ECDH10B_1204	-	lysogenization regulator
1121	 53.75	0	1247335..1248441	-	368	170080784	mnmA	ECDH10B_1205	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1122	 50.22	0	1248495..1248956	-	153	170080785	nudJ	ECDH10B_1206	-	bifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase
1123	 51.22	0	1248966..1249619	-	217	170080786	rluE	ECDH10B_1207	-	23S rRNA pseudouridine synthase
1124	 50.04	0	1249791..1251041	+	416	170080787	icd	ECDH10B_1208	-	isocitrate dehydrogenase, specific for NADP+
1125	 33.95	-2	1251144..1251467	-	107	170080788	elbA	ECDH10B_1209	-	hypothetical protein
1126	 36.79	-2	1252167..1252571	-	134	170080789	ycgX	ECDH10B_1210	-	hypothetical protein
1127	 48.77	0	1252792..1253523	-	243	170080790	ycgE	ECDH10B_1211	-	DNA-binding transcriptional regulator
1128	 43.56	-1	1253728..1254939	-	403	170080791	ycgF	ECDH10B_1212	-	FAD-binding phosphodiesterase
1129	 41.77	-1	1255253..1255489	+	78	170080792	ycgZ	ECDH10B_1213	-	hypothetical protein
1130	 37.00	-2	1255532..1255804	+	90	170080793	ymgA	ECDH10B_1214	-	hypothetical protein
1131	 34.83	-2	1255833..1256099	+	88	170080794	ymgB	ECDH10B_1215	-	hypothetical protein
1132	 35.74	-2	1256212..1256460	+	82	170080795	ymgC	ECDH10B_1216	-	hypothetical protein
1133	 44.62	-1	1256792..1258315	+	507	170080796	ycgG	ECDH10B_1217	-	inner membrane protein
1134	 40.18	-2	1258447..1258665	+	72	170080797	ymgF	ECDH10B_1218	-	hypothetical protein
1135	 45.15	-1	1261769..1262098	-	109	170080798	ymgD	ECDH10B_1222	-	hypothetical protein
1136	 53.26	0	1262108..1262383	-	91	170080799	ymgG	ECDH10B_1223	-	hypothetical protein
1137	 32.18	-2	1262454..1262627	-	57	170080800	ymgI	ECDH10B_1224	-	hypothetical protein
1138	 38.17	-2	1262728..1262913	+	61	170080801	ymgJ	ECDH10B_1225	-	hypothetical protein
1139	 43.45	-1	1263743..1264009	-	88	170080802	minE	ECDH10B_1227	-	cell division topological specificity factor
1140	 49.94	0	1264013..1264825	-	270	170080803	minD	ECDH10B_1228	-	membrane ATPase of the MinC-MinD-MinE system
1141	 51.01	0	1264849..1265544	-	231	170080804	minC	ECDH10B_1229	-	cell division inhibitor
1142	 42.28	-1	1266064..1266432	+	122	170080805	ycgJ	ECDH10B_1230	-	hypothetical protein
1143	 43.03	-1	1266535..1266936	-	133	170080806	ycgK	ECDH10B_1231	-	hypothetical protein
1144	 43.12	-1	1267145..1267471	+	108	170080807	ycgL	ECDH10B_1232	-	hypothetical protein
1145	 51.97	0	1267543..1268202	+	219	170080808	ycgM	ECDH10B_1233	-	isomerase/hydrolase
1146	 47.62	0	1268279..1268740	+	153	170080809	ycgN	ECDH10B_1234	-	hypothetical protein
1147	 41.12	-2	1268947..1269858	-	303	170080810	hlyE	ECDH10B_1235	-	hemolysin E
1148	 48.10	0	1270231..1270650	+	139	170080811	umuD	ECDH10B_1236	-	DNA polymerase V, subunit D
1149	 50.99	0	1270650..1271918	+	422	170080812	umuC	ECDH10B_1237	-	DNA polymerase V, subunit C
1150	 52.73	0	1271964..1272494	-	176	170080813	dsbB	ECDH10B_1238	-	oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
1151	 52.85	0	1272640..1274181	-	513	170080814	nhaB	ECDH10B_1239	-	sodium:proton antiporter
1152	 51.25	0	1274402..1275121	+	239	170080815	fadR	ECDH10B_1240	-	DNA-binding transcriptional dual regulator of fatty acid metabolism
1153	 49.84	0	1275173..1276705	-	510	170080816	ycgB	ECDH10B_1241	-	hypothetical protein
1154	 56.27	+1	1277035..1278333	+	432	170080817	dadA	ECDH10B_1242	-	D-amino acid dehydrogenase
1155	 57.98	+1	1278343..1279413	+	356	170080818	dadX	ECDH10B_1243	-	alanine racemase 2, PLP-binding
1156	 52.33	0	1279799..1281535	-	578	170080819	cvrA	ECDH10B_1244	-	cation/proton antiporter
1157	 53.01	0	1281630..1282544	-	304	170080820	ldcA	ECDH10B_1245	-	L,D-carboxypeptidase A
1158	 51.96	0	1282644..1283255	+	203	170080821	emtA	ECDH10B_1246	-	lytic murein endotransglycosylase E
1159	 50.75	0	1283257..1283991	-	244	170080822	ycgR	ECDH10B_1247	-	YcgR
1160	 53.33	0	1284192..1284446	+	84	170080823	ymgE	ECDH10B_1248	-	inner membrane protein
1161	 41.50	-2	1284624..1285064	+	146	170080824	ycgY	ECDH10B_1249	-	hypothetical protein
1162	 52.30	0	1285143..1286840	-	565	170080825	treA	ECDH10B_1250	-	periplasmic trehalase
1163	 50.18	0	1287160..1288578	-	472	170080826	dhaM	ECDH10B_1251	-	fused dihydroxyacetone-specific PTS enzymes: HPr component; EI component
1164	 53.55	0	1288589..1289221	-	210	170080827	dhaL	ECDH10B_1252	-	dihydroxyacetone kinase C-terminal domain-containing protein
1165	 53.03	0	1289232..1290302	-	356	170080828	dhaK	ECDH10B_1253	-	dihydroxyacetone kinase N-terminal domain-containing protein
1166	 51.46	0	1290530..1292449	+	639	170080829	dhaR	ECDH10B_1254	-	DNA-binding transcriptional regulator, dihydroxyacetone
1167	 49.79	0	1292549..1295416	-	955	170080830	ycgV	ECDH10B_1255	-	adhesin
1168	 51.01	0	1296185..1297276	-	363	170080831	ychF	ECDH10B_1256	-	GTP-binding protein
1169	 49.74	0	1297393..1297977	-	194	170080832	pth	ECDH10B_1257	-	peptidyl-tRNA hydrolase
1170	 53.05	0	1298255..1298533	+	92	170080833	ychH	ECDH10B_1258	-	inner membrane protein
1171	 54.64	0	1298588..1300267	-	559	170080834	ychM	ECDH10B_1259	-	transporter
1172	 52.53	0	1300392..1301339	-	315	170080835	prsA	ECDH10B_1260	-	phosphoribosylpyrophosphate synthase
1173	 53.40	0	1301490..1302341	-	283	170080836	ispE	ECDH10B_1261	-	4-diphosphocytidyl-2-C-methylerythritol kinase
1174	 51.44	0	1302341..1302964	-	207	170080837	lolB	ECDH10B_1262	-	chaperone for lipoproteins
1175	 54.34	0	1303178..1304434	+	418	170080838	hemA	ECDH10B_1263	-	glutamyl tRNA reductase
1176	 53.00	0	1304476..1305558	+	360