IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
62	 55.11	0	68754..70112	+	452	170079725	murF	ECDH10B_0068	-	UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
63	 53.37	0	70106..71188	+	360	170079726	mraY	ECDH10B_0069	-	phospho-N-acetylmuramoyl-pentapeptide transferase
64	 54.90	0	71191..72507	+	438	170079727	murD	ECDH10B_0070	-	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
65	 53.01	0	72507..73751	+	414	170079728	ftsW	ECDH10B_0071	-	cell division membrane protein
66	 56.09	+1	73748..74815	+	355	170079729	murG	ECDH10B_0072	-	N-acetylglucosaminyl transferase
67	 54.74	0	74869..76344	+	491	170079730	murC	ECDH10B_0073	-	UDP-N-acetylmuramate:L-alanine ligase
68	 51.57	0	76337..77257	+	306	170079731	ddlB	ECDH10B_0074	-	D-alanine:D-alanine ligase
69	 53.31	0	77259..78089	+	276	170079732	ftsQ	ECDH10B_0075	-	membrane anchored protein involved in growth of wall at septum
70	 52.10	0	78086..79348	+	420	170079733	ftsA	ECDH10B_0076	-	cell division protein
71	 54.17	0	79409..80560	+	383	170079734	ftsZ	ECDH10B_0077	-	GTP-binding tubulin-like cell division protein
72	 51.09	0	80661..81578	+	305	170079735	lpxC	ECDH10B_0078	-	UDP-3-O-acyl N-acetylglucosamine deacetylase
73	 54.00	0	81809..82321	+	170	170079736	secM	ECDH10B_0079	-	regulator of secA translation
74	 52.40	0	82383..85088	+	901	170079737	secA	ECDH10B_0080	-	preprotein translocase subunit, ATPase
75	 49.23	0	85148..85537	+	129	170079738	mutT	ECDH10B_0081	-	nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP
76	 51.52	0	85753..85950	-	65	170079739	yacG	ECDH10B_0082	-	zinc-binding protein
77	 51.48	0	85960..86703	-	247	170079740	yacF	ECDH10B_0083	-	hypothetical protein
78	 52.66	0	86703..87323	-	206	170079741	coaE	ECDH10B_0084	-	dephospho-CoA kinase
79	 51.34	0	87548..88591	+	347	170079742	guaC	ECDH10B_0085	-	GMP reductase
80	 51.95	0	88626..89828	-	400	170079743	hofC	ECDH10B_0086	-	assembly protein in type IV pilin biogenesis, transmembrane protein
81	 53.46	0	89818..91203	-	461	170079744	hofB	ECDH10B_0087	-	hypothetical protein
82	 53.06	0	91213..91653	-	146	170079745	ppdD	ECDH10B_0088	-	major pilin subunit
83	 53.13	0	91856..92749	-	297	170079746	nadC	ECDH10B_0089	-	quinolinate phosphoribosyltransferase
84	 53.80	0	92837..93388	+	183	170079747	ampD	ECDH10B_0090	-	N-acetyl-anhydromuranmyl-L-alanine amidase
85	 52.05	0	93385..94239	+	284	170079748	ampE	ECDH10B_0091	-	inner membrane protein
86	 52.69	0	94282..95655	-	457	170079749	aroP	ECDH10B_0092	-	aromatic amino acid transporter
87	 55.82	0	96196..96960	+	254	170079750	pdhR	ECDH10B_0093	-	DNA-binding transcriptional dual regulator
88	 53.04	0	97121..99784	+	887	170079751	aceE	ECDH10B_0094	-	pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding
89	 54.68	0	99799..101691	+	630	170079752	aceF	ECDH10B_0095	-	pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2
90	 53.05	0	102016..103440	+	474	170079753	lpd	ECDH10B_0096	-	lipoamide dehydrogenase, E3 component IS part of three enzyme complexes
91	 53.88	0	103511..105364	-	617	170079754	yacH	ECDH10B_0097	-	hypothetical protein
92	 55.89	+1	105719..108316	+	865	170079755	acnB	ECDH10B_0098	-	bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase
93	 52.07	0	108492..108854	+	120	170079756	yacL	ECDH10B_0099	-	hypothetical protein
94	 46.16	-1	108892..109686	-	264	170079757	speD	ECDH10B_0100	-	S-adenosylmethionine decarboxylase
95	 50.75	0	109702..110568	-	288	170079758	speE	ECDH10B_0101	-	spermidine synthase (putrescine aminopropyltransferase)
96	 50.00	0	110674..111021	-	115	170079759	yacC	ECDH10B_0102	-	hypothetical protein
97	 54.67	0	111187..112737	+	516	170079760	cueO	ECDH10B_0103	-	multicopper oxidase (laccase)
98	 55.42	0	112939..115329	-	796	170079761	gcd	ECDH10B_0104	-	glucose dehydrogenase
99	 50.65	0	115535..116071	+	178	170079762	hpt	ECDH10B_0105	-	hypoxanthine phosphoribosyltransferase
100	 50.68	0	116112..116774	-	220	170079763	can	ECDH10B_0106	-	carbonic anhydrase
101	 49.62	0	116883..117809	+	308	170079764	yadG	ECDH10B_0107	-	ABC transporter ATP-binding protein
102	 50.71	0	117806..118576	+	256	170079765	yadH	ECDH10B_0108	-	ABC transporter membrane protein
103	 49.21	0	118681..119121	+	146	170079766	yadI	ECDH10B_0109	-	PTS enzyme IIA
104	 49.51	0	119185..120414	+	409	170079767	yadE	ECDH10B_0110	-	polysaccharide deacetylase lipoprotein
105	 52.49	0	120418..120798	-	126	170079768	panD	ECDH10B_0111	-	aspartate 1-decarboxylase
106	 48.84	0	121072..121974	+	300	170079769	yadD	ECDH10B_0112	-	transposase
107	 52.70	0	122048..122899	-	283	170079770	panC	ECDH10B_0113	-	pantothenate synthetase
108	 54.59	0	122911..123705	-	264	170079771	panB	ECDH10B_0114	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
109	 40.36	-2	123819..125057	-	412	170079772	yadC	ECDH10B_0115	-	fimbrial-like adhesin protein
110	 41.37	-2	125107..125703	-	198	170079773	yadK	ECDH10B_0116	-	fimbrial-like adhesin protein
111	 42.57	-1	125730..126335	-	201	170079774	yadL	ECDH10B_0117	-	fimbrial-like adhesin protein
112	 42.81	-1	126347..126916	-	189	170079775	yadM	ECDH10B_0118	-	fimbrial-like adhesin protein
113	 43.34	-1	126933..129530	-	865	170079776	htrE	ECDH10B_0119	-	outer membrane usher protein
114	 44.40	-1	129565..130305	-	246	170079777	ecpD	ECDH10B_0120	-	periplasmic pilin chaperone
115	 44.79	-1	130403..130987	-	194	170079778	yadN	ECDH10B_0121	-	fimbrial-like adhesin protein
116	 50.00	0	131357..131836	-	159	170079779	folK	ECDH10B_0122	-	2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase
117	 55.87	0	131833..133230	-	465	170079780	pcnB	ECDH10B_0123	-	poly(A) polymerase I
118	 53.61	0	133290..134216	-	308	170079781	yadB	ECDH10B_0124	-	glutamyl-Q tRNA(Asp) synthetase
119	 52.63	0	134253..134708	-	151	170079782	dksA	ECDH10B_0125	-	DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein
120	 49.36	0	134886..135590	-	234	170079783	sfsA	ECDH10B_0126	-	DNA-binding transcriptional regulator
121	 55.93	+1	135605..136135	-	176	170079784	ligT	ECDH10B_0127	-	2'-5' RNA ligase
122	 56.58	+1	136209..138638	+	809	170079785	hrpB	ECDH10B_0128	-	ATP-dependent helicase
123	 55.15	0	138834..141368	+	844	170079786	mrcB	ECDH10B_0129	-	bifunctional glycosyl transferase and transpeptidase
124	 51.20	0	141588..143831	+	747	170079787	fhuA	ECDH10B_0130	-	ferrichrome outer membrane transporter
125	 56.89	+1	143882..144679	+	265	170079788	fhuC	ECDH10B_0131	-	ATP-binding component of iron-hydroxamate transporter
126	 54.66	0	144679..145569	+	296	170079789	fhuD	ECDH10B_0132	-	iron-hydroxamate ABC transporter periplasmic-binding component
127	 59.76	+1	145566..147548	+	660	170079790	fhuB	ECDH10B_0133	-	iron-hydroxamate ABC transporter membrane protein
128	 55.50	0	147706..148986	-	426	170079791	hemL	ECDH10B_0134	-	glutamate-1-semialdehyde aminotransferase (aminomutase)
129	 53.87	0	149211..150632	+	473	170079792	clcA	ECDH10B_0135	-	chloride channel, voltage-gated
130	 50.72	0	150714..151058	+	114	170079793	yadR	ECDH10B_0136	-	hypothetical protein
131	 53.69	0	151105..151728	-	207	170079794	yadS	ECDH10B_0137	-	inner membrane protein
132	 52.93	0	151766..152566	-	266	170079795	btuF	ECDH10B_0138	-	periplasmic binding component of cobalamin (vitamin B-12) transporter
133	 52.36	0	152559..153257	-	232	170079796	pfs	ECDH10B_0139	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
134	 47.96	0	153341..154858	+	505	170079797	dgt	ECDH10B_0140	-	deoxyguanosine triphosphate triphosphohydrolase
135	 53.96	0	154988..156412	+	474	170079798	degP	ECDH10B_0141	-	serine endoprotease (protease Do), membrane-associated
136	 52.85	0	156567..157724	+	385	170079799	cdaR	ECDH10B_0142	-	DNA-binding transcriptional activator
137	 44.44	-1	157813..158199	-	128	170079800	yaeH	ECDH10B_0143	-	hypothetical protein
138	 51.41	0	158361..159173	-	270	170079801	yaeI	ECDH10B_0144	-	phosphatase
139	 53.09	0	159227..160051	-	274	170079802	dapD	ECDH10B_0145	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
140	 53.95	0	160082..162754	-	890	170079803	glnD	ECDH10B_0146	-	uridylyltransferase/uridylyl-removing enzyme
141	 50.44	0	162816..163610	-	264	170079804	map	ECDH10B_0147	-	methionine aminopeptidase
142	 51.38	0	163978..164703	+	241	170079805	rpsB	ECDH10B_0149	-	30S ribosomal subunit protein S2
143	 49.88	0	164961..165812	+	283	170079806	tsf	ECDH10B_0150	-	protein chain elongation factor EF-Ts
144	 52.75	0	165959..166684	+	241	170079807	pyrH	ECDH10B_0151	-	uridylate kinase
145	 50.90	0	166976..167533	+	185	170079808	frr	ECDH10B_0152	-	ribosome recycling factor
146	 52.63	0	167625..168821	+	398	170079809	dxr	ECDH10B_0153	-	1-deoxy-d-xylulose 5-phosphate reductoisomerase
147	 50.00	0	169007..169768	+	253	170079810	ispU	ECDH10B_0154	-	undecaprenyl pyrophosphate synthase
148	 50.82	0	169781..170638	+	285	170079811	cdsA	ECDH10B_0155	-	CDP-diglyceride synthase
149	 50.92	0	170650..172002	+	450	170079812	rseP	ECDH10B_0156	-	inner membrane zinc RIP metalloprotease
150	 50.68	0	172032..174464	+	810	170079813	ecfK	ECDH10B_0157	-	hypothetical protein
151	 50.21	0	174586..175071	+	161	170079814	skp	ECDH10B_0158	-	periplasmic chaperone
152	 52.83	0	175075..176100	+	341	170079815	lpxD	ECDH10B_0159	-	UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase
153	 50.44	0	176205..176660	+	151	170079816	fabZ	ECDH10B_0160	-	(3R)-hydroxymyristol acyl carrier protein dehydratase
154	 53.11	0	176664..177452	+	262	170079817	lpxA	ECDH10B_0161	-	UDP-N-acetylglucosamine acetyltransferase
155	 53.79	0	177452..178600	+	382	170079818	lpxB	ECDH10B_0162	-	tetraacyldisaccharide-1-P sy