IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1016	 46.68	0	1139672..1140997	-	441	170080679	pgaC	ECDH10B_1095	-	putative polysaccharide polymerase
1017	 44.43	-1	1140990..1143008	-	672	170080680	pgaB	ECDH10B_1096	-	putatative polysaccharide N-deacetylase/carbohydrate esterase
1018	 47.32	0	1143017..1145440	-	807	170080681	pgaA	ECDH10B_1097	-	putative outer membrane poly-beta-1,6-N-acetyl-D-glucosamine (PGA) translocation/docking protein
1019	 55.13	0	1148762..1149628	-	288	170080682	insF-4	ECDH10B_1100	-	IS3 element protein InsF
1020	 50.16	0	1149625..1149933	-	102	170080683	insE-4	ECDH10B_1101	-	IS3 element protein InsE
1021	 40.53	-2	1150330..1151316	+	328	170080684	ycdU	ECDH10B_1103	-	inner membrane protein
1022	 51.22	0	1152554..1153492	+	312	170080685	ycdW	ECDH10B_1105	-	2-ketoacid reductase
1023	 48.37	0	1153547..1154284	+	245	170080686	ycdX	ECDH10B_1106	-	zinc-binding hydrolase
1024	 53.33	0	1154308..1154862	+	184	170080687	ycdY	ECDH10B_1107	-	hypothetical protein
1025	 53.86	0	1154964..1155455	+	163	170080688	ycdZ	ECDH10B_1108	-	inner membrane protein
1026	 50.12	0	1155519..1156352	-	277	170080689	csgG	ECDH10B_1109	-	outer membrane channel lipoprotein
1027	 42.45	-1	1156379..1156795	-	138	170080690	csgF	ECDH10B_1110	-	transport protein
1028	 43.08	-1	1156820..1157209	-	129	170080691	csgE	ECDH10B_1111	-	transport protein
1029	 41.78	-1	1157214..1157864	-	216	170080692	csgD	ECDH10B_1112	-	DNA-binding transcriptional regulator of adhesion determinants
1030	 41.89	-1	1158619..1159074	+	151	170080693	csgB	ECDH10B_1113	-	curlin nucleator protein, minor subunit in curli complex
1031	 51.10	0	1159115..1159570	+	151	170080694	csgA	ECDH10B_1114	-	cryptic curlin major subunit
1032	 42.64	-1	1159629..1159961	+	110	170080695	csgC	ECDH10B_1115	-	curli production protein
1033	 43.59	-1	1160082..1160393	+	103	170080696	ymdA	ECDH10B_1116	-	hypothetical protein
1034	 51.69	0	1160488..1161021	+	177	170080697	ymdB	ECDH10B_1117	-	hypothetical protein
1035	 50.70	0	1161023..1162444	+	473	170080698	ymdC	ECDH10B_1118	-	hydrolase
1036	 43.87	-1	1162452..1163609	-	385	170080699	mdoC	ECDH10B_1119	-	membrane protein required for modification of periplasmic glucan
1037	 49.87	0	1164003..1165538	+	511	170080700	mdoG	ECDH10B_1120	-	glucan biosynthesis protein, periplasmic
1038	 54.87	0	1165531..1168074	+	847	170080701	mdoH	ECDH10B_1121	-	membrane glycosyltransferase
1039	 50.44	0	1168247..1168474	+	75	170080702	yceK	ECDH10B_1122	-	lipoprotein
1040	 50.13	0	1168475..1168849	-	124	170080703	msyB	ECDH10B_1123	-	hypothetical protein
1041	 52.49	0	1168932..1170158	-	408	170080704	mdtG	ECDH10B_1124	-	drug efflux system
1042	 52.99	0	1170330..1171250	-	306	170080705	lpxL	ECDH10B_1125	-	lauryl-acyl carrier protein (ACP)-dependent acyltransferase
1043	 49.76	0	1171475..1172527	+	350	170080706	yceA	ECDH10B_1126	-	hypothetical protein
1044	 47.40	0	1172569..1173144	-	191	170080707	yceI	ECDH10B_1127	-	secreted protein
1045	 51.15	0	1173148..1173714	-	188	170080708	yceJ	ECDH10B_1128	-	cytochrome b561
1046	 37.59	-2	1173975..1174115	-	46	170080709	yceO	ECDH10B_1129	-	hypothetical protein
1047	 52.46	0	1174136..1175254	-	372	170080710	solA	ECDH10B_1130	-	N-methyltryptophan oxidase, FAD-binding
1048	 45.10	-1	1175369..1175623	-	84	170080711	bssS	ECDH10B_1131	-	regulator of biofilm formation
1049	 47.97	0	1175910..1176155	-	81	170080712	dinI	ECDH10B_1132	-	DNA damage-inducible protein I
1050	 53.10	0	1176229..1177275	-	348	170080713	pyrC	ECDH10B_1133	-	dihydro-orotase
1051	 46.88	0	1177381..1177941	-	186	170080714	yceB	ECDH10B_1134	-	lipoprotein
1052	 48.92	0	1178075..1178722	-	215	170080715	grxB	ECDH10B_1135	-	glutaredoxin 2
1053	 55.33	0	1178786..1179994	-	402	170080716	mdtH	ECDH10B_1136	-	drug efflux system
1054	 49.40	0	1180230..1180814	+	194	170080717	rimJ	ECDH10B_1137	-	ribosomal-protein-S5-alanine N-acetyltransferase
1055	 51.85	0	1180825..1181472	+	215	170080718	yceH	ECDH10B_1138	-	hypothetical protein
1056	 55.30	0	1181474..1182397	+	307	170080719	mviM	ECDH10B_1139	-	oxidoreductase
1057	 53.71	0	1182507..1184042	+	511	170080720	yceN	ECDH10B_1140	-	inner membrane protein
1058	 48.20	0	1184082..1184498	-	138	170080721	flgN	ECDH10B_1141	-	export chaperone for FlgK and FlgL
1059	 52.72	0	1184503..1184796	-	97	170080722	flgM	ECDH10B_1142	-	anti-sigma factor for FliA (sigma 28)
1060	 52.27	0	1184872..1185531	-	219	170080723	flgA	ECDH10B_1143	-	assembly protein for flagellar basal-body periplasmic P ring
1061	 53.48	0	1185686..1186102	+	138	170080724	flgB	ECDH10B_1144	-	flagellar component of cell-proximal portion of basal-body rod
1062	 52.84	0	1186106..1186510	+	134	170080725	flgC	ECDH10B_1145	-	flagellar component of cell-proximal portion of basal-body rod
1063	 54.60	0	1186522..1187217	+	231	170080726	flgD	ECDH10B_1146	-	flagellar hook assembly protein
1064	 51.53	0	1187242..1188450	+	402	170080727	flgE	ECDH10B_1147	-	flagellar hook protein
1065	 59.13	+1	1188470..1189225	+	251	170080728	flgF	ECDH10B_1148	-	flagellar component of cell-proximal portion of basal-body rod
1066	 53.77	0	1189397..1190179	+	260	170080729	flgG	ECDH10B_1149	-	flagellar component of cell-distal portion of basal-body rod
1067	 53.51	0	1190232..1190930	+	232	170080730	flgH	ECDH10B_1150	-	flagellar protein of basal-body outer-membrane L ring
1068	 54.19	0	1190942..1192039	+	365	170080731	flgI	ECDH10B_1151	-	flagellar basal body protein
1069	 54.67	0	1192039..1192980	+	313	170080732	flgJ	ECDH10B_1152	-	muramidase
1070	 51.82	0	1193046..1194689	+	547	170080733	flgK	ECDH10B_1153	-	flagellar hook-filament junction protein 1
1071	 50.73	0	1194701..1195654	+	317	170080734	flgL	ECDH10B_1154	-	flagellar hook-filament junction protein
1072	 55.65	0	1195850..1199035	-	1061	170080735	rne	ECDH10B_1155	-	RNase E
1073	 44.55	-1	1199170..1199490	+	106	170080736	yceQ	ECDH10B_1156	-	hypothetical protein
1074	 51.46	0	1199608..1200567	+	319	170080737	rluC	ECDH10B_1157	-	ribosomal large subunit pseudouridine synthase C
1075	 50.09	0	1200679..1201263	-	194	170080738	yceF	ECDH10B_1158	-	hypothetical protein
1076	 49.62	0	1201462..1201983	+	173	170080739	yceD	ECDH10B_1160	-	hypothetical protein
1077	 54.02	0	1202035..1202208	+	57	170080740	rpmF	ECDH10B_1161	-	50S ribosomal subunit protein L32
1078	 52.10	0	1202289..1203359	+	356	170080741	plsX	ECDH10B_1162	-	fatty acid/phospholipid synthesis protein
1079	 54.72	0	1203427..1204380	+	317	170080742	fabH	ECDH10B_1163	-	3-oxoacyl-[acyl-carrier-protein] synthase III
1080	 55.16	0	1204396..1205325	+	309	170080743	fabD	ECDH10B_1164	-	malonyl-CoA-[acyl-carrier-protein] transacylase
1081	 51.56	0	1205338..1206072	+	244	170080744	fabG	ECDH10B_1165	-	3-oxoacyl-[acyl-carrier-protein] reductase
1082	 48.10	0	1206283..1206519	+	78	170080745	acpP	ECDH10B_1166	-	acyl carrier protein (ACP)
1083	 53.30	0	1206607..1207848	+	413	170080746	fabF	ECDH10B_1167	-	3-oxoacyl-[acyl-carrier-protein] synthase II
1084	 50.62	0	1207968..1208777	+	269	170080747	pabC	ECDH10B_1168	-	4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex
1085	 50.73	0	1208780..1209802	+	340	170080748	yceG	ECDH10B_1169	-	aminodeoxychorismate lyase
1086	 54.05	0	1209792..1210433	+	213	170080749	tmk	ECDH10B_1170	-	thymidylate kinase
1087	 54.03	0	1210430..1211434	+	334	170080750	holB	ECDH10B_1171	-	DNA polymerase III, delta prime subunit
1088	 50.88	0	1211445..1212242	+	265	170080751	ycfH	ECDH10B_1172	-	metallodependent hydrolase
1089	 52.65	0	1212537..1213970	+	477	170080752	ptsG	ECDH10B_1173	-	fused glucose-specific PTS enzymes: iibcomponent; IIC component
1090	 50.00	0	1214030..1216219	-	729	170080753	fhuE	ECDH10B_1174	-	ferric-rhodotorulic acid outer membrane transporter
1091	 50.56	0	1216553..1216912	+	119	170080754	hinT	ECDH10B_1175	-	purine nucleoside phosphoramidase
1092	 49.47	0	1216915..1217292	+	125	170080755	ycfL	ECDH10B_1176	-	lipoprotein
1093	 56.39	+1	1217306..1217947	+	213	170080756	ycfM	ECDH10B_1177	-	outer membrane lipoprotein
1094	 53.33	0	1217928..1218752	+	274	170080757	thiK	ECDH10B_1178	-	thiamin kinase
1095	 53.02	0	1218763..1219788	+	341	170080758	nagZ	ECDH10B_1179	-	beta-N-acetylglucosaminidase
1096	 46.59	0	1219811..1220353	+	180	170080759	ycfP	ECDH10B_1180	-	hypothetical protein
1097	 52.95	0	1220753..1222057	+	434	170080760	ndh	ECDH10B_1181	-	respiratory NADH dehydrogenase 2/cupric reductase
1098	 53.70	0	1222267..1222806	+	179	170080761	ycfJ	ECDH10B_1182	-	hypothetical protein
1099	 51.18	0	1222868..1223500	-	210	170080762	ycfQ	ECDH10B_1183	-	DNA-binding transcriptional regulator
1100	 47.29	0	1223741..1223998	+	85	170080763	ycfR	ECDH10B_1184	-	hypothetical protein
1101	 53.37	0	1224080..1225042	-	320	170080764	ycfS	ECDH10B_1185	-	hypothetical protein
1102	 54.77	0	1225186..1228632	-	1148	170080765	mfd	ECDH10B_1186	-	transcription-repair coupling factor
1103	 49.53	0	1228760..1229833	-	357	170080766	ycfT	ECDH10B_1187	-	inner membrane protein
1104	 54.17	0	1230095..1231294	+	399	170080767	lolC	ECDH10B_1188	-	outer membrane-specific lipoprotein ABC transporter membrane protein
1105	 55.13	0	1231287..1231988	+	233	170080768	lolD	ECDH10B_1189	-	outer membrane-specific lipoprotein ABC transporter ATP-binding protein
1106	 51.89	0	1231988..1233232	+	414	170080769	lolE	ECDH10B_1190	-	outer membrane-specific lipoprotein ABC transporter membrane protein
1107	 52.74	0	1233261..1234172	+	303	170080770	nagK	ECDH10B_1191	-	N-acetyl-D-glucosamine kinase
1108	 51.79	0	1234188..1235027	+	279	170080771	cobB	ECDH10B_1192	-	deacetylase of acetyl-CoA synthetase, NAD-dependent
1109	 42.59	-1	1235147..1235935	-	262