IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
953	 48.24	0	1073561..1074070	-	169	170080616	sulA	ECDH10B_1028	-	SOS cell division inhibitor
954	 48.10	0	1074289..1074918	+	209	170080617	sxy	ECDH10B_1029	-	CRP-S promoter co-activator
955	 52.23	0	1074881..1077034	-	717	170080618	yccS	ECDH10B_1030	-	inner membrane protein
956	 48.32	0	1077053..1077499	-	148	170080619	yccF	ECDH10B_1031	-	inner membrane protein
957	 53.04	0	1077622..1079676	+	684	170080620	helD	ECDH10B_1032	-	DNA helicase IV
958	 52.72	0	1079708..1080166	-	152	170080621	mgsA	ECDH10B_1033	-	methylglyoxal synthase
959	 50.68	0	1080262..1080924	-	220	170080622	yccT	ECDH10B_1034	-	hypothetical protein
960	 54.35	0	1081097..1081510	+	137	170080623	yccU	ECDH10B_1035	-	CoA-binding protein
961	 55.66	0	1081555..1081872	-	105	170080624	hspQ	ECDH10B_1036	-	DNA-binding protein, hemimethylated
962	 51.81	0	1081930..1083120	-	396	170080625	yccW	ECDH10B_1037	-	methyltransferase
963	 52.33	0	1083215..1083493	+	92	170080626	yccX	ECDH10B_1038	-	acylphosphatase
964	 46.67	0	1083490..1083819	-	109	170080627	yccK	ECDH10B_1039	-	sulfur transfer protein
965	 51.21	0	1083910..1084569	-	219	170080628	yccA	ECDH10B_1040	-	inner membrane protein
966	 56.12	+1	1085290..1086408	+	372	170080629	hyaA	ECDH10B_1042	-	hydrogenase 1, small subunit
967	 56.52	+1	1086405..1088198	+	597	170080630	hyaB	ECDH10B_1043	-	hydrogenase 1, large subunit
968	 51.84	0	1088217..1088924	+	235	170080631	hyaC	ECDH10B_1044	-	hydrogenase 1, b-type cytochrome subunit
969	 58.84	+1	1088921..1089508	+	195	170080632	hyaD	ECDH10B_1045	-	hypothetical protein
970	 56.64	+1	1089505..1089903	+	132	170080633	hyaE	ECDH10B_1046	-	HyaE
971	 54.90	0	1089900..1090757	+	285	170080634	hyaF	ECDH10B_1047	-	HyaF
972	 54.05	0	1090891..1092435	+	514	170080635	appC	ECDH10B_1048	-	cytochrome bd-II oxidase, subunit I
973	 53.12	0	1092447..1093583	+	378	170080636	appB	ECDH10B_1049	-	cytochrome bd-II oxidase, subunit II
974	 53.89	0	1093768..1095066	+	432	170080637	appA	ECDH10B_1050	-	phosphoanhydride phosphorylase
975	 50.53	0	1095181..1097361	-	726	170080638	etk	ECDH10B_1051	-	cryptic autophosphorylating protein tyrosine kinase Etk
976	 52.35	0	1097381..1097827	-	148	170080639	etp	ECDH10B_1052	-	phosphotyrosine-protein phosphatase
977	 50.96	0	1097815..1098954	-	379	170080640	gfcE	ECDH10B_1053	-	exopolysaccharide export protein
978	 51.98	0	1099000..1101096	-	698	170080641	gfcD	ECDH10B_1054	-	hypothetical protein
979	 52.34	0	1101096..1101842	-	248	170080642	gfcC	ECDH10B_1055	-	hypothetical protein
980	 47.60	0	1101839..1102483	-	214	170080643	gfcB	ECDH10B_1056	-	outer membrane lipoprotein
981	 57.52	+1	1102590..1102895	-	101	170080644	gfcA	ECDH10B_1057	-	hypothetical protein
982	 52.90	0	1102984..1103259	+	91	170080645	insA-4	ECDH10B_1058	-	IS1 repressor protein InsA
983	 54.76	0	1103178..1103681	+	167	170080646	insB-4	ECDH10B_1059	-	IS1 transposase InsAB'
984	 46.95	0	1104114..1104326	-	70	170080647	cspH	ECDH10B_1060	-	CspA family stress protein
985	 44.13	-1	1104612..1104824	+	70	170080648	cspG	ECDH10B_1061	-	DNA-binding transcriptional regulator
986	 41.56	-2	1104998..1105228	+	76	170080649	ymcE	ECDH10B_1062	-	cold shock gene
987	 39.66	-2	1105218..1105391	+	57	170080650	gnsA	ECDH10B_1063	-	regulator of phosphatidylethanolamine synthesis
988	 49.16	0	1105440..1106513	-	357	170080651	yccM	ECDH10B_1064	-	4Fe-4S membrane protein
989	 53.77	0	1106585..1109329	-	914	170080652	torS	ECDH10B_1065	-	hybrid sensory histidine kinase in two-component regulatory system with TorR
990	 53.45	0	1109412..1110440	+	342	170080653	torT	ECDH10B_1066	-	periplasmic sensory protein associated with the TorRS two-component regulatory system
991	 52.38	0	1110413..1111105	-	230	170080654	torR	ECDH10B_1067	-	DNA-binding response regulator in two-component regulatory system with TorS
992	 51.24	0	1111235..1112407	+	390	170080655	torC	ECDH10B_1068	-	trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit
993	 55.32	0	1112407..1114953	+	848	170080656	torA	ECDH10B_1069	-	trimethylamine N-oxide (TMAO) reductase I, catalytic subunit
994	 53.17	0	1114950..1115549	+	199	170080657	torD	ECDH10B_1070	-	chaperone involved in maturation of TorA subunit of trimethylamine N-oxide reductase system I
995	 54.25	0	1115701..1116006	-	101	170080658	cbpM	ECDH10B_1071	-	modulator of CbpA co-chaperone
996	 52.88	0	1116006..1116926	-	306	170080659	cbpA	ECDH10B_1072	-	curved DNA-binding protein
997	 34.13	-2	1117187..1118443	+	418	170080660	yccE	ECDH10B_1073	-	hypothetical protein
998	 51.61	0	1118736..1119977	+	413	170080661	agp	ECDH10B_1074	-	glucose-1-phosphatase/inositol phosphatase
999	 46.93	0	1120015..1120242	-	75	170080662	yccJ	ECDH10B_1075	-	hypothetical protein
1000	 53.94	0	1120263..1120859	-	198	170080663	wrbA	ECDH10B_1076	-	flavoprotein in Trp regulation
1001	 51.15	0	1121232..1121405	+	57	170080664	ymdF	ECDH10B_1077	-	hypothetical protein
1002	 54.03	0	1121662..1122990	-	442	170080665	rutG	ECDH10B_1078	-	pyrimidine transporter
1003	 58.99	+1	1123011..1123505	-	164	170080666	rutF	ECDH10B_1079	-	oxidoreductase, flavin:NADH component
1004	 57.19	+1	1123516..1124106	-	196	170080667	rutE	ECDH10B_1080	-	oxidoreductase
1005	 57.93	+1	1124116..1124916	-	266	170080668	rutD	ECDH10B_1081	-	hydrolase
1006	 54.01	0	1124924..1125310	-	128	170080669	rutC	ECDH10B_1082	-	hypothetical protein
1007	 55.41	0	1125322..1126014	-	230	170080670	rutB	ECDH10B_1083	-	isochorismatase
1008	 55.09	0	1126014..1127162	-	382	170080671	rutA	ECDH10B_1084	-	monooxygenase
1009	 51.33	0	1127393..1128031	+	212	170080672	rutR	ECDH10B_1085	-	rut operon repressor
1010	 56.98	+1	1128071..1132033	-	1320	170080673	putA	ECDH10B_1086	-	multifunctional proline dehydrogenase, delta-1-pyrroline-5-carboxylate dehydrogenase, and DNA-binding transcriptional regulator
1011	 53.68	0	1132456..1133964	+	502	170080674	putP	ECDH10B_1087	-	proline:sodium symporter
1012	 51.33	0	1135394..1136521	+	375	170080675	efeO	ECDH10B_1091	-	component of a tripartite ferrous iron transporter
1013	 53.77	0	1136527..1137798	+	423	170080676	efeB	ECDH10B_1092	-	redox component of a tripartite ferrous iron transporter
1014	 52.21	0	1138143..1139207	+	354	170080677	phoH	ECDH10B_1093	-	hypothetical protein
1015	 44.20	-1	1139257..1139670	-	137	170080678	pgaD	ECDH10B_1094	-	inner membrane protein
1016	 46.68	0	1139672..1140997	-	441	170080679	pgaC	ECDH10B_1095	-	putative polysaccharide polymerase
1017	 44.43	-1	1140990..1143008	-	672	170080680	pgaB	ECDH10B_1096	-	putatative polysaccharide N-deacetylase/carbohydrate esterase
1018	 47.32	0	1143017..1145440	-	807	170080681	pgaA	ECDH10B_1097	-	putative outer membrane poly-beta-1,6-N-acetyl-D-glucosamine (PGA) translocation/docking protein
1019	 55.13	0	1148762..1149628	-	288	170080682	insF-4	ECDH10B_1100	-	IS3 element protein InsF
1020	 50.16	0	1149625..1149933	-	102	170080683	insE-4	ECDH10B_1101	-	IS3 element protein InsE
1021	 40.53	-2	1150330..1151316	+	328	170080684	ycdU	ECDH10B_1103	-	inner membrane protein
1022	 51.22	0	1152554..1153492	+	312	170080685	ycdW	ECDH10B_1105	-	2-ketoacid reductase
1023	 48.37	0	1153547..1154284	+	245	170080686	ycdX	ECDH10B_1106	-	zinc-binding hydrolase
1024	 53.33	0	1154308..1154862	+	184	170080687	ycdY	ECDH10B_1107	-	hypothetical protein
1025	 53.86	0	1154964..1155455	+	163	170080688	ycdZ	ECDH10B_1108	-	inner membrane protein
1026	 50.12	0	1155519..1156352	-	277	170080689	csgG	ECDH10B_1109	-	outer membrane channel lipoprotein
1027	 42.45	-1	1156379..1156795	-	138	170080690	csgF	ECDH10B_1110	-	transport protein
1028	 43.08	-1	1156820..1157209	-	129	170080691	csgE	ECDH10B_1111	-	transport protein
1029	 41.78	-1	1157214..1157864	-	216	170080692	csgD	ECDH10B_1112	-	DNA-binding transcriptional regulator of adhesion determinants
1030	 41.89	-1	1158619..1159074	+	151	170080693	csgB	ECDH10B_1113	-	curlin nucleator protein, minor subunit in curli complex
1031	 51.10	0	1159115..1159570	+	151	170080694	csgA	ECDH10B_1114	-	cryptic curlin major subunit
1032	 42.64	-1	1159629..1159961	+	110	170080695	csgC	ECDH10B_1115	-	curli production protein
1033	 43.59	-1	1160082..1160393	+	103	170080696	ymdA	ECDH10B_1116	-	hypothetical protein
1034	 51.69	0	1160488..1161021	+	177	170080697	ymdB	ECDH10B_1117	-	hypothetical protein
1035	 50.70	0	1161023..1162444	+	473	170080698	ymdC	ECDH10B_1118	-	hydrolase
1036	 43.87	-1	1162452..1163609	-	385	170080699	mdoC	ECDH10B_1119	-	membrane protein required for modification of periplasmic glucan
1037	 49.87	0	1164003..1165538	+	511	170080700	mdoG	ECDH10B_1120	-	glucan biosynthesis protein, periplasmic
1038	 54.87	0	1165531..1168074	+	847	170080701	mdoH	ECDH10B_1121	-	membrane glycosyltransferase
1039	 50.44	0	1168247..1168474	+	75	170080702	yceK	ECDH10B_1122	-	lipoprotein
1040	 50.13	0	1168475..1168849	-	124	170080703	msyB	ECDH10B_1123	-	hypothetical protein
1041	 52.49	0	1168932..1170158	-	408	170080704	mdtG	ECDH10B_1124	-	drug efflux system
1042	 52.99	0	1170330..1171250	-	306	170080705	lpxL	ECDH10B_1125	-	lauryl-acyl carrier protein (ACP)-dependent acyltransferase
1043	 49.76	0	1171475..1172527	+	350	170080706	yceA	ECDH10B_1126	-	hypothetical protein
1044	 47.40	0	1172569..1173144	-	191	170080707	yceI	ECDH10B_1127	-	secreted protein
1045	 51.15	0	1173148..1173714	-	188	170080708	yceJ	ECDH10B_1128	-	cytochrome b561
1046	 37.59	-2	1173975..1174115	-	46	170080709	yceO	ECDH10B_1129	-	hypothetical protein
1047	 52.46	0	1174136..1175254	-	372