IslandPathversion 1.0

IslandPath Analysis: Escherichia coli E24377A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.48 STD DEV: 5.64
Escherichia coli E24377A, complete genome - 1..4979619
4749 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2602	 58.50	+1	2718153..2719340	-	395	157154795	eutG	EcE24377A_2730	-	ethanolamine utilization protein EutG
2603	 58.42	+1	2719330..2720166	-	278	157155503	eutJ	EcE24377A_2731	-	ethanolamine utilization protein EutJ
2604	 57.55	+1	2720177..2721580	-	467	157154906	eutE	EcE24377A_2732	-	ethanolamine utilization protein EutE
2605	 53.12	0	2721592..2721879	-	95	157159231	eutN	EcE24377A_2733	-	ethanolamine utilization protein
2606	 58.16	+1	2721986..2722279	-	97	157158705	eutM	EcE24377A_2734	-	ethanolamine utilization protein EutM
2607	 58.21	+1	2722318..2723334	-	338	157158168	pta	EcE24377A_2735	-	phosphotransacetylase
2608	 58.46	+1	2723331..2724134	-	267	157159056	eutT	EcE24377A_2736	-	ethanolamine utilization cobalamin adenosyltransferase
2609	 55.84	0	2724131..2724832	-	233	157159208	-	EcE24377A_2737	-	ethanolamine utilization protein EutQ
2610	 49.79	0	2724807..2725286	-	159	157157909	eutP	EcE24377A_2738	-	ethanolamine utilization protein, EutP
2611	 48.53	0	2725299..2725706	-	135	157157188	-	EcE24377A_2739	-	ethanolamine utilization protein EutS
2612	 49.07	0	2725563..2725670	+	35	157156544	-	EcE24377A_2740	-	hypothetical protein
2613	 54.17	0	2725927..2728206	-	759	157156474	maeB	EcE24377A_2741	-	malic enzyme
2614	 50.68	0	2728495..2729445	+	316	157155721	tal1	EcE24377A_2742	-	transaldolase A
2615	 54.49	0	2729465..2731468	+	667	157155048	tktB	EcE24377A_2743	-	transketolase
2616	 57.02	+1	2731461..2731574	+	37	157155025	-	EcE24377A_2745	-	hypothetical protein
2617	 54.79	0	2731564..2732607	-	347	157155725	-	EcE24377A_2744	-	hypothetical protein
2618	 48.44	0	2732733..2733308	-	191	157155986	-	EcE24377A_2746	-	NUDIX family hydrolase
2619	 55.51	0	2733376..2735355	-	659	157155091	aegA	EcE24377A_2747	-	putative oxidoreductase Fe-S binding subunit
2620	 51.85	0	2735561..2737261	+	566	157155766	narQ	EcE24377A_2748	-	nitrate/nitrite sensor protein NarQ
2621	 54.30	0	2737425..2740538	+	1037	157158507	acrD	EcE24377A_2749	-	aminoglycoside/multidrug efflux system
2622	 47.34	0	2741077..2741433	+	118	157159180	-	EcE24377A_2750	-	hypothetical protein
2623	 53.46	0	2741437..2742564	+	375	157158473	dapE	EcE24377A_2751	-	succinyl-diaminopimelate desuccinylase
2624	 48.26	0	2742592..2742792	+	66	157159147	-	EcE24377A_2752	-	hypothetical protein
2625	 53.93	0	2742873..2743571	-	232	157157118	-	EcE24377A_2753	-	esterase YpfH
2626	 55.21	0	2743645..2745660	-	671	157157754	-	EcE24377A_2754	-	hypothetical protein
2627	 53.12	0	2745675..2746538	-	287	157155162	-	EcE24377A_2755	-	hypothetical protein
2628	 45.18	0	2747083..2747310	-	75	157155392	-	EcE24377A_2756	-	hypothetical protein
2629	 52.38	0	2747464..2748177	-	237	157156219	purC	EcE24377A_2757	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2630	 47.22	0	2748183..2748290	-	35	157156715	-	EcE24377A_2758	-	hypothetical protein
2631	 55.36	0	2748390..2749424	-	344	157157892	-	EcE24377A_2759	-	lipoprotein
2632	 51.88	0	2749441..2750319	-	292	157158100	dapA	EcE24377A_2760	-	dihydrodipicolinate synthase
2633	 48.36	0	2750399..2751037	+	212	157158641	gcvR	EcE24377A_2761	-	glycine cleavage system transcriptional repressor
2634	 49.26	0	2751037..2751507	+	156	157159418	bcp	EcE24377A_2762	-	thioredoxin-dependent thiol peroxidase
2635	 56.47	+1	2751760..2752377	+	205	157156854	-	EcE24377A_2763	-	iron-sulfur cluster-binding protein
2636	 53.97	0	2754405..2755349	+	314	157156555	hyfC	EcE24377A_2765	-	hydrogenase-4 component C
2637	 53.46	0	2756607..2757257	+	216	157155069	hyfE	EcE24377A_2767	-	hydrogenase 4 membrane subunit
2638	 54.66	0	2758838..2760553	+	571	157157080	-	EcE24377A_2769	-	hydrogenase-4, G subunit
2639	 55.86	0	2760563..2761108	+	181	157156396	-	EcE24377A_2770	-	hydrogenase 4 subunit H
2640	 55.86	0	2761105..2761863	+	252	157158565	-	EcE24377A_2771	-	hydrogenase-4, I subunit
2641	 52.90	0	2761856..2762269	+	137	157159063	-	EcE24377A_2772	-	formate hydrogenlyase maturation protein HycH
2642	 52.71	0	2762299..2764311	+	670	157157257	-	EcE24377A_2773	-	formate hydrogenlyase transcriptional activator
2643	 50.18	0	2764333..2765181	+	282	157159160	fnt	EcE24377A_2774	-	putative formate transporter
2644	 53.86	0	2765219..2766280	-	353	157157181	-	EcE24377A_2775	-	PerM family permease
2645	 53.69	0	2766493..2767956	+	487	157157808	-	EcE24377A_2776	-	M48 family peptidase
2646	 53.15	0	2768350..2768460	-	36	157155691	-	EcE24377A_2778	-	hypothetical protein
2647	 52.74	0	2768473..2769219	-	248	157158460	hda	EcE24377A_2779	-	DNA replication initiation factor
2648	 52.25	0	2769269..2770558	-	429	157157034	uraA	EcE24377A_2780	-	uracil transporter
2649	 53.11	0	2770644..2771270	-	208	157155140	upp	EcE24377A_2781	-	uracil phosphoribosyltransferase
2650	 53.08	0	2771595..2772632	+	345	157158807	purM	EcE24377A_2782	-	phosphoribosylaminoimidazole synthetase
2651	 53.21	0	2772632..2773270	+	212	157157696	purN	EcE24377A_2783	-	phosphoribosylglycinamide formyltransferase
2652	 48.72	0	2773441..2775507	+	688	157157220	ppk	EcE24377A_2784	-	polyphosphate kinase
2653	 50.78	0	2775512..2777053	+	513	157156806	ppx	EcE24377A_2785	-	exopolyphosphatase
2654	 46.61	0	2777092..2779335	-	747	157156852	-	EcE24377A_2786	-	cyclic diguanylate phosphodiesterase domain-containing protein
2655	 31.37	-2	2779517..2779669	-	50	157156311	-	EcE24377A_2787	-	hypothetical protein
2656	 49.48	0	2779687..2779878	+	63	157159199	-	EcE24377A_2788	-	hypothetical protein
2657	 46.51	0	2780192..2780707	+	171	157156723	-	EcE24377A_2789	-	surface antigen family protein
2658	 48.89	0	2780723..2781262	+	179	157158741	-	EcE24377A_2790	-	hypothetical protein
2659	 54.63	0	2781357..2782934	-	525	157157765	guaA	EcE24377A_2791	-	bifunctional GMP synthase/glutamine amidotransferase protein
2660	 54.46	0	2783003..2784469	-	488	157155040	guaB	EcE24377A_2792	-	inositol-5-monophosphate dehydrogenase
2661	 48.15	0	2785998..2786213	-	71	157155744	-	EcE24377A_2793	-	hypothetical protein
2662	 51.93	0	2786282..2787754	-	490	157156728	engA	EcE24377A_2795	-	GTP-binding protein EngA
2663	 53.10	0	2787872..2789050	-	392	157155949	-	EcE24377A_2796	-	outer membrane protein assembly complex subunit YfgL
2664	 49.76	0	2789061..2789681	-	206	157158004	-	EcE24377A_2797	-	hypothetical protein
2665	 54.75	0	2789699..2790973	-	424	157155202	hisS	EcE24377A_2798	-	histidyl-tRNA synthetase
2666	 53.17	0	2791084..2792202	-	372	157158896	ispG	EcE24377A_2799	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2667	 54.64	0	2792229..2793242	-	337	157155877	-	EcE24377A_2800	-	hypothetical protein
2668	 53.07	0	2793527..2794681	-	384	157157838	-	EcE24377A_2801	-	hypothetical protein
2669	 52.55	0	2794831..2795262	-	143	157157218	ndk	EcE24377A_2802	-	nucleoside diphosphate kinase
2670	 56.46	+1	2795411..2797723	-	770	157158154	pbpC	EcE24377A_2803	-	penicillin-binding protein 1C
2671	 52.96	0	2797724..2802685	-	1653	157154935	-	EcE24377A_2804	-	alpha-2-macroglobulin domain-containing protein
2672	 53.07	0	2802892..2803737	+	281	157156971	sseA	EcE24377A_2805	-	3-mercaptopyruvate sulfurtransferase
2673	 46.85	0	2804230..2805006	-	258	157158304	sseB	EcE24377A_2806	-	enhanced serine sensitivity protein SseB
2674	 56.46	+1	2805148..2806431	-	427	157155395	pepB	EcE24377A_2807	-	aminopeptidase B
2675	 49.75	0	2806609..2806809	-	66	157158155	iscX	EcE24377A_2808	-	hypothetical protein
2676	 52.68	0	2806821..2807156	-	111	157158839	fdx	EcE24377A_2809	-	ferredoxin, 2Fe-2S type, ISC system
2677	 57.37	+1	2807158..2809008	-	616	157157591	hscA	EcE24377A_2810	-	chaperone protein HscA
2678	 52.13	0	2809025..2809540	-	171	157158249	hscB	EcE24377A_2811	-	co-chaperone HscB
2679	 59.83	+1	2809548..2809664	-	38	157155994	-	EcE24377A_2812	-	hypothetical protein
2680	 50.30	0	2809636..2809965	-	109	157156631	iscA	EcE24377A_2813	-	iron-sulfur cluster assembly protein
2681	 49.87	0	2809976..2810362	-	128	157155593	iscU	EcE24377A_2814	-	scaffold protein
2682	 53.25	0	2810390..2811604	-	404	157155974	iscS	EcE24377A_2815	-	cysteine desulfurase
2683	 53.58	0	2811716..2812204	-	162	157158615	iscR	EcE24377A_2816	-	DNA-binding transcriptional regulator IscR
2684	 55.28	0	2812505..2813242	-	245	157158953	-	EcE24377A_2817	-	RNA methyltransferase
2685	 53.98	0	2813361..2814164	+	267	157155322	suhB	EcE24377A_2818	-	inositol monophosphatase
2686	 50.18	0	2814309..2815163	+	284	157155268	-	EcE24377A_2819	-	hypothetical protein
2687	 51.44	0	2815354..2816634	+	426	157156379	csiE	EcE24377A_2821	-	stationary phase inducible protein CsiE
2688	 56.67	+1	2816626..2817765	-	379	157156907	hcaT	EcE24377A_2820	-	putative 3-phenylpropionic acid transporter
2689	 49.83	0	2817925..2818815	-	296	157157520	hcaR	EcE24377A_2822	-	DNA-binding transcriptional regulator HcaR
2690	 52.41	0	2820309..2820827	+	172	157158391	hcaF	EcE24377A_2824	-	3-phenylpropionate dioxygenase subunit beta
2691	 55.45	0	2820827..2821147	+	106	157154809	hcaC	EcE24377A_2825	-	3-phenylpropionate dioxygenase ferredoxin subunit
2692	 56.21	+1	2821144..2821956	+	270	157158187	hcaB	EcE24377A_2826	-	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase
2693	 53.95	0	2821966..2823168	+	400	157156491	hcaD	EcE24377A_2827	-	phenylpropionate dioxygenase ferredoxin reductase subunit
2694	 50.12	0	2823265..2823687	+	140	157157627	-	EcE24377A_2828	-	hypothetical protein
2695	 55.21	0	2823735..2824607	-	290	157157995	-	EcE24377A_2829	-	aldose 1-epimerase family protein
2696	 54.52	0	2824619..2825713	-	364	157158660	-	EcE24377A_2830	-	zinc-binding dehydrogenase family oxidoreductase
2697	 56.56	+1	2825746..2826744	-	332	157158445	-	EcE24377A_2831	-	putative sugar ABC transporter, permease protein
2698	 55.95	0	2826769..2828280	-	503	157154916	-	EcE24377A_2832	-	putative sugar ABC transporter, ATP-binding protein
2699	 46.46	0	2828303..2829247	-	314	157155581	-	EcE24377A_2833	-	putative sugar ABC transporter, periplasmic sugar-binding protein
2700	 54.25	0	2829383..2832757	-	1124	157155956	-	EcE24377A_2834	-	TPR repeat-containing protein
2701	 51.26	0	2832782..2833975	+	397	157156629	-	EcE24377A_2835	-	ROK family protein
50.48	MEAN

5.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.