IslandPathversion 1.0

IslandPath Analysis: Escherichia coli E24377A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.48 STD DEV: 5.64
Escherichia coli E24377A, complete genome - 1..4979619
4749 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2555	 50.46	0	2671422..2671748	-	108	157158700	-	EcE24377A_2677	-	PTS system, fructose specific IIB subunit
2556	 51.24	0	2671967..2672932	-	321	157159392	glk	EcE24377A_2678	-	glucokinase
2557	 53.70	0	2673136..2674392	+	418	157157634	-	EcE24377A_2679	-	hypothetical protein
2558	 45.45	0	2674409..2674507	-	32	157157172	-	EcE24377A_2680	-	hypothetical protein
2559	 52.29	0	2674507..2674833	+	108	157155969	-	EcE24377A_2681	-	hypothetical protein
2560	 53.27	0	2674974..2676212	-	412	157155133	mntH	EcE24377A_2682	-	manganese transport protein MntH
2561	 49.96	0	2676548..2677750	+	400	157155548	nupC	EcE24377A_2683	-	nucleoside transporter NupC
2562	 48.95	0	2677800..2679989	-	729	157159235	-	EcE24377A_2684	-	diguanylate cyclase
2563	 50.14	0	2680623..2680967	+	114	157157542	-	EcE24377A_2687	-	hypothetical protein
2564	 46.31	0	2680969..2681361	+	130	157154838	-	EcE24377A_2688	-	hypothetical protein
2565	 52.61	0	2681413..2682828	-	471	157156721	gltX	EcE24377A_2689	-	glutamyl-tRNA synthetase
2566	 42.69	-1	2683605..2683946	+	113	157158730	-	EcE24377A_2695	-	hypothetical protein
2567	 54.37	0	2683937..2684863	-	308	157159187	-	EcE24377A_2694	-	LysR family transcriptional regulator
2568	 51.65	0	2684953..2685951	+	332	157157547	-	EcE24377A_2697	-	bile acid/Na+ symporter family protein
2569	 50.68	0	2685948..2686166	-	72	157155808	-	EcE24377A_2696	-	hypothetical protein
2570	 54.27	0	2686168..2688183	-	671	157156100	ligA	EcE24377A_2698	-	NAD-dependent DNA ligase LigA
2571	 55.42	0	2688254..2689240	-	328	157156810	zipA	EcE24377A_2699	-	cell division protein ZipA
2572	 49.87	0	2689470..2690231	+	253	157154763	cysZ	EcE24377A_2700	-	putative sulfate transport protein CysZ
2573	 50.10	0	2690416..2691387	+	323	157155432	cysK	EcE24377A_2701	-	cysteine synthase A
2574	 50.78	0	2691771..2692028	+	85	157158766	ptsH	EcE24377A_2702	-	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)
2575	 49.71	0	2692073..2693800	+	575	157159395	ptsI	EcE24377A_2703	-	phosphoenolpyruvate-protein phosphotransferase
2576	 46.86	0	2693841..2694350	+	169	157157951	crr	EcE24377A_2704	-	glucose-specific PTS system component
2577	 52.35	0	2694392..2695243	-	283	157158000	pdxK	EcE24377A_2705	-	pyridoxal kinase
2578	 47.70	0	2695348..2695716	+	122	157157050	-	EcE24377A_2706	-	hypothetical protein
2579	 55.59	0	2695719..2696630	-	303	157156485	cysM	EcE24377A_2707	-	cysteine synthase B
2580	 58.74	+1	2696764..2697861	-	365	157156447	cysA	EcE24377A_2708	-	sulfate/thiosulfate transporter subunit
2581	 55.71	0	2697851..2698726	-	291	157155901	cysW	EcE24377A_2709	-	sulfate/thiosulfate transporter permease subunit
2582	 56.12	0	2698726..2699559	-	277	157157732	cysT	EcE24377A_2710	-	sulfate/thiosulfate transporter subunit
2583	 53.79	0	2699559..2700575	-	338	157157262	cysP	EcE24377A_2711	-	thiosulfate transporter subunit
2584	 55.05	0	2700733..2701524	-	263	157158523	ucpA	EcE24377A_2712	-	short chain dehydrogenase
2585	 51.28	0	2701653..2702510	-	285	157157722	-	EcE24377A_2713	-	RpiR family transcriptional regulator
2586	 53.62	0	2702674..2703570	+	298	157155139	murQ	EcE24377A_2714	-	N-acetylmuramic acid-6-phosphate etherase
2587	 56.42	+1	2703574..2704998	+	474	157159046	murP	EcE24377A_2715	-	N-acetylmuramic acid phosphotransfer permease
2588	 52.72	0	2705003..2706307	+	434	157155824	-	EcE24377A_2716	-	hypothetical protein
2589	 55.89	0	2706365..2707264	-	299	157157932	-	EcE24377A_2717	-	dyp-type peroxidase family protein
2590	 50.52	0	2707360..2707935	-	191	157156298	-	EcE24377A_2718	-	hypothetical protein
2591	 52.89	0	2707996..2708445	-	149	157155845	-	EcE24377A_2719	-	putative inner membrane protein YfeZ
2592	 51.64	0	2708432..2708857	-	141	157155283	-	EcE24377A_2720	-	putative acetyltransferase
2593	 50.46	0	2709071..2709940	+	289	157156944	amiA	EcE24377A_2721	-	N-acetylmuramoyl-l-alanine amidase I
2594	 54.78	0	2709944..2710843	+	299	157156271	hemF	EcE24377A_2722	-	coproporphyrinogen III oxidase
2595	 53.56	0	2710849..2711901	-	350	157155855	-	EcE24377A_2723	-	transcriptional regulator EutR
2596	 58.08	+1	2711947..2712447	-	166	157155205	-	EcE24377A_2724	-	putative ethanolamine utilization protein EutK
2597	 55.76	0	2712460..2713119	-	219	157158984	-	EcE24377A_2725	-	putative ethanolamine utilization protein EutL
2598	 56.87	+1	2713129..2714016	-	295	157158237	eutC	EcE24377A_2726	-	ethanolamine ammonia-lyase small subunit
2599	 55.51	0	2714037..2715398	-	453	157155166	eutB	EcE24377A_2727	-	ethanolamine ammonia-lyase, large subunit
2600	 58.76	+1	2715410..2716813	-	467	157159089	eutA	EcE24377A_2728	-	reactivating factor for ethanolamine ammonia lyase
2601	 54.93	0	2716810..2718036	-	408	157155308	eutH	EcE24377A_2729	-	ethanolamine utilization protein EutH
2602	 58.50	+1	2718153..2719340	-	395	157154795	eutG	EcE24377A_2730	-	ethanolamine utilization protein EutG
2603	 58.42	+1	2719330..2720166	-	278	157155503	eutJ	EcE24377A_2731	-	ethanolamine utilization protein EutJ
2604	 57.55	+1	2720177..2721580	-	467	157154906	eutE	EcE24377A_2732	-	ethanolamine utilization protein EutE
2605	 53.12	0	2721592..2721879	-	95	157159231	eutN	EcE24377A_2733	-	ethanolamine utilization protein
2606	 58.16	+1	2721986..2722279	-	97	157158705	eutM	EcE24377A_2734	-	ethanolamine utilization protein EutM
2607	 58.21	+1	2722318..2723334	-	338	157158168	pta	EcE24377A_2735	-	phosphotransacetylase
2608	 58.46	+1	2723331..2724134	-	267	157159056	eutT	EcE24377A_2736	-	ethanolamine utilization cobalamin adenosyltransferase
2609	 55.84	0	2724131..2724832	-	233	157159208	-	EcE24377A_2737	-	ethanolamine utilization protein EutQ
2610	 49.79	0	2724807..2725286	-	159	157157909	eutP	EcE24377A_2738	-	ethanolamine utilization protein, EutP
2611	 48.53	0	2725299..2725706	-	135	157157188	-	EcE24377A_2739	-	ethanolamine utilization protein EutS
2612	 49.07	0	2725563..2725670	+	35	157156544	-	EcE24377A_2740	-	hypothetical protein
2613	 54.17	0	2725927..2728206	-	759	157156474	maeB	EcE24377A_2741	-	malic enzyme
2614	 50.68	0	2728495..2729445	+	316	157155721	tal1	EcE24377A_2742	-	transaldolase A
2615	 54.49	0	2729465..2731468	+	667	157155048	tktB	EcE24377A_2743	-	transketolase
2616	 57.02	+1	2731461..2731574	+	37	157155025	-	EcE24377A_2745	-	hypothetical protein
2617	 54.79	0	2731564..2732607	-	347	157155725	-	EcE24377A_2744	-	hypothetical protein
2618	 48.44	0	2732733..2733308	-	191	157155986	-	EcE24377A_2746	-	NUDIX family hydrolase
2619	 55.51	0	2733376..2735355	-	659	157155091	aegA	EcE24377A_2747	-	putative oxidoreductase Fe-S binding subunit
2620	 51.85	0	2735561..2737261	+	566	157155766	narQ	EcE24377A_2748	-	nitrate/nitrite sensor protein NarQ
2621	 54.30	0	2737425..2740538	+	1037	157158507	acrD	EcE24377A_2749	-	aminoglycoside/multidrug efflux system
2622	 47.34	0	2741077..2741433	+	118	157159180	-	EcE24377A_2750	-	hypothetical protein
2623	 53.46	0	2741437..2742564	+	375	157158473	dapE	EcE24377A_2751	-	succinyl-diaminopimelate desuccinylase
2624	 48.26	0	2742592..2742792	+	66	157159147	-	EcE24377A_2752	-	hypothetical protein
2625	 53.93	0	2742873..2743571	-	232	157157118	-	EcE24377A_2753	-	esterase YpfH
2626	 55.21	0	2743645..2745660	-	671	157157754	-	EcE24377A_2754	-	hypothetical protein
2627	 53.12	0	2745675..2746538	-	287	157155162	-	EcE24377A_2755	-	hypothetical protein
2628	 45.18	0	2747083..2747310	-	75	157155392	-	EcE24377A_2756	-	hypothetical protein
2629	 52.38	0	2747464..2748177	-	237	157156219	purC	EcE24377A_2757	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2630	 47.22	0	2748183..2748290	-	35	157156715	-	EcE24377A_2758	-	hypothetical protein
2631	 55.36	0	2748390..2749424	-	344	157157892	-	EcE24377A_2759	-	lipoprotein
2632	 51.88	0	2749441..2750319	-	292	157158100	dapA	EcE24377A_2760	-	dihydrodipicolinate synthase
2633	 48.36	0	2750399..2751037	+	212	157158641	gcvR	EcE24377A_2761	-	glycine cleavage system transcriptional repressor
2634	 49.26	0	2751037..2751507	+	156	157159418	bcp	EcE24377A_2762	-	thioredoxin-dependent thiol peroxidase
2635	 56.47	+1	2751760..2752377	+	205	157156854	-	EcE24377A_2763	-	iron-sulfur cluster-binding protein
2636	 53.97	0	2754405..2755349	+	314	157156555	hyfC	EcE24377A_2765	-	hydrogenase-4 component C
2637	 53.46	0	2756607..2757257	+	216	157155069	hyfE	EcE24377A_2767	-	hydrogenase 4 membrane subunit
2638	 54.66	0	2758838..2760553	+	571	157157080	-	EcE24377A_2769	-	hydrogenase-4, G subunit
2639	 55.86	0	2760563..2761108	+	181	157156396	-	EcE24377A_2770	-	hydrogenase 4 subunit H
2640	 55.86	0	2761105..2761863	+	252	157158565	-	EcE24377A_2771	-	hydrogenase-4, I subunit
2641	 52.90	0	2761856..2762269	+	137	157159063	-	EcE24377A_2772	-	formate hydrogenlyase maturation protein HycH
2642	 52.71	0	2762299..2764311	+	670	157157257	-	EcE24377A_2773	-	formate hydrogenlyase transcriptional activator
2643	 50.18	0	2764333..2765181	+	282	157159160	fnt	EcE24377A_2774	-	putative formate transporter
2644	 53.86	0	2765219..2766280	-	353	157157181	-	EcE24377A_2775	-	PerM family permease
2645	 53.69	0	2766493..2767956	+	487	157157808	-	EcE24377A_2776	-	M48 family peptidase
2646	 53.15	0	2768350..2768460	-	36	157155691	-	EcE24377A_2778	-	hypothetical protein
2647	 52.74	0	2768473..2769219	-	248	157158460	hda	EcE24377A_2779	-	DNA replication initiation factor
2648	 52.25	0	2769269..2770558	-	429	157157034	uraA	EcE24377A_2780	-	uracil transporter
2649	 53.11	0	2770644..2771270	-	208	157155140	upp	EcE24377A_2781	-	uracil phosphoribosyltransferase
2650	 53.08	0	2771595..2772632	+	345	157158807	purM	EcE24377A_2782	-	phosphoribosylaminoimidazole synthetase
2651	 53.21	0	2772632..2773270	+	212	157157696	purN	EcE24377A_2783	-	phosphoribosylglycinamide formyltransferase
2652	 48.72	0	2773441..2775507	+	688	157157220	ppk	EcE24377A_2784	-	polyphosphate kinase
2653	 50.78	0	2775512..2777053	+	513	157156806	ppx	EcE24377A_2785	-	exopolyphosphatase
2654	 46.61	0	2777092..2779335	-	747	157156852	-	EcE24377A_2786	-	cyclic diguanylate phosphodiesterase domain-containing protein
50.48	MEAN

5.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.