IslandPathversion 1.0

IslandPath Analysis: Escherichia coli E24377A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.48 STD DEV: 5.64
Escherichia coli E24377A, complete genome - 1..4979619
4749 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2479	 51.94	0	2594178..2594951	-	257	157155528	hisP	EcE24377A_2600	-	histidine/lysine/arginine/ornithine transporter subunit
2480	 49.79	0	2594959..2595675	-	238	157156249	hisM	EcE24377A_2601	-	histidine ABC transporter, permease protein HisM
2481	 52.69	0	2595672..2596358	-	228	157158838	hisQ	EcE24377A_2602	-	histidine ABC transporter, permease protein HisQ
2482	 49.30	0	2596448..2597230	-	260	157159349	hisJ	EcE24377A_2603	-	histidine ABC transporter, periplasmic histidine-binding protein
2483	 50.32	0	2597451..2598233	-	260	157157871	argT	EcE24377A_2604	-	lysine-arginine-ornithine-binding periplasmic protein
2484	 52.98	0	2598499..2599068	-	189	157157444	ubiX	EcE24377A_2605	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2485	 52.77	0	2599163..2600680	-	505	157156919	purF	EcE24377A_2606	-	amidophosphoribosyltransferase
2486	 49.49	0	2600717..2601205	-	162	157156389	cvpA	EcE24377A_2607	-	colicin V production protein
2487	 56.86	+1	2601464..2602126	-	220	157155823	-	EcE24377A_2608	-	hypothetical protein
2488	 55.79	0	2602116..2603384	-	422	157155272	folC	EcE24377A_2609	-	bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
2489	 55.30	0	2603454..2604368	-	304	157158344	accD	EcE24377A_2610	-	acetyl-CoA carboxylase subunit beta
2490	 47.58	0	2604524..2605183	-	219	157155466	-	EcE24377A_2611	-	hypothetical protein
2491	 56.09	0	2605266..2606078	-	270	157155365	truA	EcE24377A_2612	-	tRNA pseudouridine synthase A
2492	 55.62	0	2606078..2607091	-	337	157154856	-	EcE24377A_2613	-	putative semialdehyde dehydrogenase
2493	 47.37	0	2607072..2607185	+	37	157155347	-	EcE24377A_2615	-	hypothetical protein
2494	 52.07	0	2607157..2608293	-	378	157159447	pdxB	EcE24377A_2614	-	erythronate-4-phosphate dehydrogenase
2495	 49.55	0	2608393..2609397	+	334	157158102	-	EcE24377A_2617	-	flagella biosynthesis regulator
2496	 52.25	0	2609394..2610572	-	392	157157524	-	EcE24377A_2616	-	hypothetical protein
2497	 56.02	0	2610804..2612024	-	406	157156872	fabB	EcE24377A_2618	-	3-oxoacyl-(acyl carrier protein) synthase I
2498	 52.37	0	2612183..2614189	+	668	157157358	mnmC	EcE24377A_2619	-	5-methylaminomethyl-2-thiouridine methyltransferase
2499	 53.05	0	2614245..2614523	-	92	157155830	-	EcE24377A_2620	-	hypothetical protein
2500	 50.27	0	2614557..2615105	-	182	157156358	-	EcE24377A_2621	-	hypothetical protein
2501	 52.59	0	2615105..2615914	-	269	157155594	-	EcE24377A_2622	-	hypothetical protein
2502	 55.27	0	2615914..2616738	-	274	157156902	mepA	EcE24377A_2623	-	penicillin-insensitive murein endopeptidase
2503	 56.81	+1	2616742..2617827	-	361	157155097	aroC	EcE24377A_2624	-	chorismate synthase
2504	 53.16	0	2617986..2618918	-	310	157155888	prmB	EcE24377A_2625	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
2505	 53.26	0	2619084..2619635	+	183	157158361	-	EcE24377A_2626	-	hypothetical protein
2506	 45.75	0	2619708..2620577	-	289	157158957	-	EcE24377A_2627	-	hypothetical protein
2507	 48.33	0	2620564..2621103	-	179	157157406	-	EcE24377A_2628	-	fimbrial protein
2508	 48.06	0	2621100..2621588	-	162	157157908	-	EcE24377A_2629	-	hypothetical protein
2509	 47.62	0	2621585..2622088	-	167	157156990	-	EcE24377A_2630	-	fimbrial protein
2510	 48.90	0	2622104..2622829	-	241	157157497	-	EcE24377A_2631	-	periplasmic pilus chaperone family protein
2511	 45.50	0	2622702..2622890	+	62	157157222	-	EcE24377A_2633	-	hypothetical protein
2512	 51.13	0	2622876..2625521	-	881	157157705	-	EcE24377A_2632	-	fimbrial usher family protein
2513	 45.07	0	2625510..2626046	+	178	157156883	-	EcE24377A_2635	-	hypothetical protein
2514	 46.10	0	2625603..2626166	-	187	157156367	-	EcE24377A_2634	-	fimbrial protein
2515	 52.88	0	2626850..2627335	-	161	157155292	sixA	EcE24377A_2636	-	phosphohistidine phosphatase
2516	 51.75	0	2627538..2629682	-	714	157155802	fadJ	EcE24377A_2637	-	multifunctional fatty acid oxidation complex subunit alpha
2517	 56.06	0	2629682..2630992	-	436	157158369	fadI	EcE24377A_2638	-	3-ketoacyl-CoA thiolase
2518	 52.28	0	2631172..2631456	-	94	157158947	-	EcE24377A_2639	-	hypothetical protein
2519	 50.04	0	2631828..2633168	+	446	157157341	-	EcE24377A_2640	-	long-chain fatty acid outer membrane transporter
2520	 35.22	-2	2633535..2634593	+	352	157157915	-	EcE24377A_2641	-	hypothetical protein
2521	 51.85	0	2634775..2635530	-	251	157156646	-	EcE24377A_2642	-	VacJ family lipoprotein
2522	 47.37	0	2635556..2635726	-	56	157154743	-	EcE24377A_2643	-	hypothetical protein
2523	 48.45	0	2635824..2636756	+	310	157156775	-	EcE24377A_2644	-	hypothetical protein
2524	 43.83	-1	2637347..2638594	-	415	157154895	-	EcE24377A_2646	-	galactoside permease
2525	 52.02	0	2638666..2639580	-	304	157158692	cscK	EcE24377A_2647	-	aminoimidazole riboside kinase
2526	 29.03	-2	2639702..2639794	+	30	157159186	-	EcE24377A_2648	-	hypothetical protein
2527	 50.94	0	2639787..2641229	+	480	157158158	-	EcE24377A_2649	-	sucrose-6-phosphate hydrolase
2528	 51.81	0	2641237..2642232	-	331	157156023	-	EcE24377A_2650	-	LacI family sucrose operon repressor
2529	 48.86	0	2642475..2642693	+	72	157156581	-	EcE24377A_2651	-	hypothetical protein
2530	 50.79	0	2642711..2644039	+	442	157158819	dsdA	EcE24377A_2652	-	D-serine dehydratase
2531	 41.85	-1	2644147..2645685	-	512	157157326	emrY	EcE24377A_2653	-	DHA2 family drug:H+ antiporter-1
2532	 41.84	-1	2645685..2646848	-	387	157155084	emrK	EcE24377A_2654	-	drug resistance MFS transporter, membrane fusion protein (MFP) subunit EmrK
2533	 40.16	-1	2647264..2647878	+	204	157155607	evgA	EcE24377A_2655	-	DNA-binding transcriptional activator EvgA
2534	 40.85	-1	2647883..2651476	+	1197	157157004	evgS	EcE24377A_2657	-	hybrid sensory histidine kinase in two-component regulatory system with EvgA
2535	 41.41	-1	2651252..2651350	-	32	157156467	-	EcE24377A_2656	-	hypothetical protein
2536	 45.29	0	2651532..2652677	-	381	157155978	-	EcE24377A_2658	-	hypothetical protein
2537	 33.33	-2	2652671..2652775	+	34	157157512	-	EcE24377A_2660	-	hypothetical protein
2538	 44.87	0	2652751..2653695	-	314	157156710	-	EcE24377A_2659	-	putative transporter YfdV
2539	 46.43	0	2653765..2655459	-	564	157158048	-	EcE24377A_2661	-	putative oxalyl-CoA decarboxylase
2540	 47.08	0	2655513..2656763	-	416	157156745	frc	EcE24377A_2662	-	formyl-coenzyme A transferase
2541	 46.29	0	2657276..2657908	-	210	157157931	-	EcE24377A_2663	-	hypothetical protein
2542	 52.17	0	2658464..2658601	-	45	157157284	-	EcE24377A_2664	-	hypothetical protein
2543	 48.56	0	2658556..2658798	-	80	157156965	-	EcE24377A_2665	-	hypothetical protein
2544	 51.57	0	2659151..2660071	+	306	157156269	-	EcE24377A_2666	-	lipid A biosynthesis palmitoleoyl acyltransferase
2545	 39.32	-1	2660381..2660497	+	38	157155903	-	EcE24377A_2667	-	hypothetical protein
2546	 55.29	0	2660562..2661800	-	412	157155217	-	EcE24377A_2668	-	aminotransferase
2547	 54.81	0	2661719..2661853	-	44	157158466	-	EcE24377A_2669	-	hypothetical protein
2548	 51.07	0	2662195..2663874	+	559	157155409	-	EcE24377A_2670	-	sensor histidine kinase
2549	 47.35	0	2663889..2664623	+	244	157157403	-	EcE24377A_2671	-	response regulator
2550	 53.15	0	2664636..2665493	+	285	157155013	-	EcE24377A_2672	-	AraC family transcriptional regulator
2551	 55.25	0	2665496..2667991	-	831	157159178	fryA	EcE24377A_2673	-	multiphosphoryl transfer protein 1
2552	 58.19	+1	2668016..2669053	-	345	157157890	-	EcE24377A_2674	-	exoaminopeptidase
2553	 57.55	+1	2669053..2670138	-	361	157157245	ypdF	EcE24377A_2675	-	aminopeptidase
2554	 54.17	0	2670153..2671400	-	415	157156602	fryC	EcE24377A_2676	-	PTS system, fructose-like, IIC component
2555	 50.46	0	2671422..2671748	-	108	157158700	-	EcE24377A_2677	-	PTS system, fructose specific IIB subunit
2556	 51.24	0	2671967..2672932	-	321	157159392	glk	EcE24377A_2678	-	glucokinase
2557	 53.70	0	2673136..2674392	+	418	157157634	-	EcE24377A_2679	-	hypothetical protein
2558	 45.45	0	2674409..2674507	-	32	157157172	-	EcE24377A_2680	-	hypothetical protein
2559	 52.29	0	2674507..2674833	+	108	157155969	-	EcE24377A_2681	-	hypothetical protein
2560	 53.27	0	2674974..2676212	-	412	157155133	mntH	EcE24377A_2682	-	manganese transport protein MntH
2561	 49.96	0	2676548..2677750	+	400	157155548	nupC	EcE24377A_2683	-	nucleoside transporter NupC
2562	 48.95	0	2677800..2679989	-	729	157159235	-	EcE24377A_2684	-	diguanylate cyclase
2563	 50.14	0	2680623..2680967	+	114	157157542	-	EcE24377A_2687	-	hypothetical protein
2564	 46.31	0	2680969..2681361	+	130	157154838	-	EcE24377A_2688	-	hypothetical protein
2565	 52.61	0	2681413..2682828	-	471	157156721	gltX	EcE24377A_2689	-	glutamyl-tRNA synthetase
2566	 42.69	-1	2683605..2683946	+	113	157158730	-	EcE24377A_2695	-	hypothetical protein
2567	 54.37	0	2683937..2684863	-	308	157159187	-	EcE24377A_2694	-	LysR family transcriptional regulator
2568	 51.65	0	2684953..2685951	+	332	157157547	-	EcE24377A_2697	-	bile acid/Na+ symporter family protein
2569	 50.68	0	2685948..2686166	-	72	157155808	-	EcE24377A_2696	-	hypothetical protein
2570	 54.27	0	2686168..2688183	-	671	157156100	ligA	EcE24377A_2698	-	NAD-dependent DNA ligase LigA
2571	 55.42	0	2688254..2689240	-	328	157156810	zipA	EcE24377A_2699	-	cell division protein ZipA
2572	 49.87	0	2689470..2690231	+	253	157154763	cysZ	EcE24377A_2700	-	putative sulfate transport protein CysZ
2573	 50.10	0	2690416..2691387	+	323	157155432	cysK	EcE24377A_2701	-	cysteine synthase A
2574	 50.78	0	2691771..2692028	+	85	157158766	ptsH	EcE24377A_2702	-	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)
2575	 49.71	0	2692073..2693800	+	575	157159395	ptsI	EcE24377A_2703	-	phosphoenolpyruvate-protein phosphotransferase
2576	 46.86	0	2693841..2694350	+	169	157157951	crr	EcE24377A_2704	-	glucose-specific PTS system component
2577	 52.35	0	2694392..2695243	-	283	157158000	pdxK	EcE24377A_2705	-	pyridoxal kinase
2578	 47.70	0	2695348..2695716	+	122	157157050	-	EcE24377A_2706	-	hypothetical protein
50.48	MEAN

5.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.