IslandPathversion 1.0

IslandPath Analysis: Escherichia coli E24377A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.48 STD DEV: 5.64
Escherichia coli E24377A, complete genome - 1..4979619
4749 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1346	 49.77	0	1417219..1417857	+	212	157157791	ompW	EcE24377A_1414	-	outer membrane protein W
1347	 46.68	0	1417903..1419033	-	376	157157141	-	EcE24377A_1415	-	phage integrase family site specific recombinase
1348	 49.47	0	1419324..1421795	-	823	157155450	-	EcE24377A_1416	-	exonuclease family protein
1349	 35.19	-2	1421767..1421874	+	35	157154767	-	EcE24377A_1417	-	hypothetical protein
1350	 44.12	-1	1421875..1422078	-	67	157159414	-	EcE24377A_1418	-	hypothetical protein
1351	 47.84	0	1422274..1423128	-	284	157158740	-	EcE24377A_1419	-	Rha family phage regulatory protein
1352	 47.62	0	1424416..1424562	-	48	157158109	-	EcE24377A_1420	-	hypothetical protein
1353	 48.19	0	1424564..1424812	-	82	157157426	-	EcE24377A_1421	-	hypothetical protein
1354	 48.63	0	1425368..1425622	+	84	157157452	-	EcE24377A_1422	-	DNA-binding transcriptional regulator DicC
1355	 47.64	0	1425606..1426157	+	183	157158011	-	EcE24377A_1423	-	hypothetical protein
1356	 49.95	0	1426129..1427169	+	346	157155135	-	EcE24377A_1424	-	hypothetical protein
1357	 56.76	+1	1426958..1427623	+	221	157155681	-	EcE24377A_1425	-	hypothetical protein
1358	 51.52	0	1427653..1428048	+	131	157156500	-	EcE24377A_1426	-	hypothetical protein
1359	 53.95	0	1428051..1428341	+	96	157157030	-	EcE24377A_1427	-	hypothetical protein
1360	 38.03	-2	1428722..1428934	+	70	157157748	-	EcE24377A_1429	-	hypothetical protein
1361	 33.12	-2	1429524..1430456	-	310	157158566	-	EcE24377A_1430	-	hypothetical protein
1362	 46.15	0	1431077..1431193	+	38	157157536	-	EcE24377A_1431	-	hypothetical protein
1363	 39.76	-1	1431258..1431506	+	82	157155997	-	EcE24377A_1433	-	hypothetical protein
1364	 53.62	0	1431853..1432902	+	349	157155483	-	EcE24377A_1434	-	hypothetical protein
1365	 51.39	0	1432915..1433274	+	119	157155088	-	EcE24377A_1435	-	crossover junction endodeoxyribonuclease RusA-like protein
1366	 47.68	0	1433271..1433960	+	229	157158789	-	EcE24377A_1436	-	phage antitermination protein Q
1367	 37.86	-2	1434030..1434869	+	279	157158263	-	EcE24377A_1437	-	protein kinase domain-containing protein
1368	 39.52	-1	1434866..1435609	+	247	157156540	-	EcE24377A_1438	-	hypothetical protein
1369	 46.67	0	1435742..1436026	+	94	157156014	-	EcE24377A_1439	-	hypothetical protein
1370	 49.09	0	1436177..1437223	+	348	157156068	-	EcE24377A_1440	-	DNA methylase
1371	 57.26	+1	1438724..1439074	+	116	157155526	-	EcE24377A_1443	-	hypothetical protein
1372	 57.94	+1	1439071..1439322	+	83	157157395	-	EcE24377A_1444	-	hypothetical protein
1373	 58.26	+1	1439331..1440413	+	360	157159232	-	EcE24377A_1445	-	lambda family phage portal protein
1374	 58.39	+1	1440410..1440844	+	144	157155616	-	EcE24377A_1446	-	hypothetical protein
1375	 62.04	+2	1440816..1441031	+	71	157155083	-	EcE24377A_1447	-	hypothetical protein
1376	 62.76	+2	1441015..1441347	+	110	157156982	-	EcE24377A_1448	-	hypothetical protein
1377	 59.09	+1	1441496..1441693	+	65	157156594	-	EcE24377A_1449	-	hypothetical protein
1378	 55.48	0	1441690..1444236	+	848	157157749	-	EcE24377A_1450	-	hypothetical protein
1379	 54.42	0	1444283..1445074	+	263	157157303	-	EcE24377A_1451	-	hypothetical protein
1380	 53.89	0	1445087..1445626	+	179	157159182	-	EcE24377A_1452	-	hypothetical protein
1381	 45.45	0	1447274..1447834	-	186	157158654	-	EcE24377A_1453	-	hypothetical protein
1382	 48.72	0	1448307..1448423	+	38	157157233	-	EcE24377A_1454	-	hypothetical protein
1383	 40.63	-1	1448483..1448989	-	168	157157720	-	EcE24377A_1455	-	hypothetical protein
1384	 42.91	-1	1449035..1449535	-	166	157156495	yciF	EcE24377A_1456	-	YciF protein
1385	 47.69	0	1449593..1449787	-	64	157156995	-	EcE24377A_1457	-	hypothetical protein
1386	 51.11	0	1449621..1449800	-	59	157158483	-	EcE24377A_1458	-	hypothetical protein
1387	 53.78	0	1450181..1450987	-	268	157155085	trpA	EcE24377A_1459	-	tryptophan synthase subunit alpha
1388	 54.36	0	1450987..1452180	-	397	157157226	trpB	EcE24377A_1460	-	tryptophan synthase subunit beta
1389	 52.76	0	1452192..1453550	-	452	157157701	trpC	EcE24377A_1461	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
1390	 56.08	0	1453554..1455149	-	531	157157057	trpD	EcE24377A_1462	-	bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase
1391	 47.47	0	1455072..1455170	+	32	157155349	-	EcE24377A_1464	-	hypothetical protein
1392	 54.70	0	1455149..1456711	-	520	157157578	trpE	EcE24377A_1463	-	anthranilate synthase component I
1393	 54.47	0	1457006..1457866	+	286	157154837	-	EcE24377A_1465	-	putative phosphoesterase
1394	 48.79	0	1457863..1458483	+	206	157155810	-	EcE24377A_1466	-	hypothetical protein
1395	 54.52	0	1458584..1459456	+	290	157154729	rluB	EcE24377A_1467	-	23S rRNA pseudouridylate synthase B
1396	 50.59	0	1459496..1460086	-	196	157159251	btuR	EcE24377A_1468	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1397	 52.44	0	1460083..1460841	-	252	157158085	-	EcE24377A_1470	-	short chain dehydrogenase
1398	 50.29	0	1461061..1462110	+	349	157157433	sohB	EcE24377A_1471	-	putative periplasmic protease
1399	 44.09	-1	1462080..1462172	+	30	157156815	-	EcE24377A_1473	-	hypothetical protein
1400	 47.22	0	1462146..1462397	-	83	157154945	-	EcE24377A_1472	-	hypothetical protein
1401	 51.58	0	1462777..1465374	+	865	157159421	topA	EcE24377A_1474	-	DNA topoisomerase I
1402	 48.72	0	1465584..1466558	+	324	157157588	cysB	EcE24377A_1475	-	transcriptional regulator CysB
1403	 48.94	0	1466877..1467017	+	46	157154844	-	EcE24377A_1476	-	hypothetical protein
1404	 46.11	0	1467008..1467187	+	59	157155351	-	EcE24377A_1477	-	hypothetical protein
1405	 52.80	0	1467560..1470235	+	891	157154783	acnA	EcE24377A_1478	-	aconitate hydratase
1406	 50.08	0	1470299..1470889	-	196	157155420	ribA	EcE24377A_1479	-	GTP cyclohydrolase II
1407	 50.46	0	1471059..1471823	+	254	157156121	pgpB	EcE24377A_1480	-	phosphatidylglycerophosphatase B
1408	 50.16	0	1471972..1472280	+	102	157156793	-	EcE24377A_1481	-	hypothetical protein
1409	 51.97	0	1472287..1473456	+	389	157157418	-	EcE24377A_1482	-	hypothetical protein
1410	 49.31	0	1473490..1473633	-	47	157158214	-	EcE24377A_1483	-	hypothetical protein
1411	 52.71	0	1473649..1474386	+	245	157158650	pyrF	EcE24377A_1484	-	orotidine 5'-phosphate decarboxylase
1412	 49.85	0	1474386..1474712	+	108	157159191	-	EcE24377A_1485	-	translation initiation factor Sui1
1413	 52.05	0	1474838..1475056	-	72	157156348	-	EcE24377A_1486	-	lipoprotein
1414	 49.07	0	1475325..1476074	-	249	157157058	-	EcE24377A_1487	-	DeoR family transcriptional regulator
1415	 47.54	0	1476164..1476346	-	60	157155148	-	EcE24377A_1488	-	hypothetical protein
1416	 48.44	0	1476484..1478469	-	661	157155383	-	EcE24377A_1489	-	RNase II stability modulator
1417	 38.89	-2	1478573..1478680	-	35	157158303	-	EcE24377A_1490	-	hypothetical protein
1418	 53.28	0	1478704..1480638	-	644	157159110	rnb	EcE24377A_1491	-	exoribonuclease II
1419	 51.16	0	1480706..1481911	-	401	157157317	-	EcE24377A_1492	-	hypothetical protein
1420	 49.07	0	1481862..1481969	-	35	157158715	-	EcE24377A_1493	-	hypothetical protein
1421	 53.36	0	1481978..1482766	-	262	157155907	fabI	EcE24377A_1494	-	enoyl-(acyl carrier protein) reductase
1422	 39.39	-1	1482781..1482879	+	32	157156330	-	EcE24377A_1495	-	hypothetical protein
1423	 51.28	0	1483134..1483484	-	116	157156848	-	EcE24377A_1496	-	hypothetical protein
1424	 51.18	0	1483555..1484361	-	268	157156325	sapF	EcE24377A_1497	-	peptide ABC transporter, ATP-binding protein SapF
1425	 51.26	0	1484363..1485355	-	330	157156906	sapD	EcE24377A_1498	-	peptide ABC transporter, ATP-binding protein SapD
1426	 57.13	+1	1485355..1486245	-	296	157157948	sapC	EcE24377A_1499	-	peptide ABC transporter, permease protein SapC
1427	 51.14	0	1486232..1487197	-	321	157158421	sapB	EcE24377A_1500	-	peptide ABC transporter, permease protein SapB
1428	 54.26	0	1487194..1488837	-	547	157158938	sapA	EcE24377A_1501	-	peptide ABC transporter, periplasmic peptide-binding protein
1429	 46.83	0	1489043..1489168	+	41	157155756	-	EcE24377A_1503	-	hypothetical protein
1430	 48.37	0	1489150..1489395	-	81	157155302	-	EcE24377A_1502	-	hypothetical protein
1431	 50.45	0	1489411..1489521	-	36	157157343	-	EcE24377A_1504	-	hypothetical protein
1432	 53.54	0	1489529..1490914	-	461	157155487	-	EcE24377A_1505	-	amino acid permease
1433	 53.49	0	1491217..1492635	-	472	157154986	puuA	EcE24377A_1506	-	glutamate--putrescine ligase
1434	 44.44	-1	1492823..1492957	-	44	157159227	-	EcE24377A_1507	-	hypothetical protein
1435	 52.42	0	1492847..1493611	+	254	157158718	puuD	EcE24377A_1508	-	gamma-glutamyl-gamma-aminobutyrate hydrolase
1436	 51.08	0	1493638..1494195	+	185	157158238	puuR	EcE24377A_1509	-	DNA-binding transcriptional repressor PuuR
1437	 57.26	+1	1494345..1495832	+	495	157157669	puuC	EcE24377A_1510	-	gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
1438	 58.70	+1	1495834..1497114	+	426	157157224	puuB	EcE24377A_1511	-	gamma-glutamylputrescine oxidoreductase
1439	 57.58	+1	1497152..1498417	+	421	157156698	gabT1	EcE24377A_1512	-	PLP-dependent GABA aminotransferase
1440	 51.84	0	1498537..1499514	-	325	157154719	pspF	EcE24377A_1513	-	phage shock protein operon transcriptional activator
1441	 49.33	0	1499681..1500349	+	222	157158696	pspA	EcE24377A_1514	-	phage shock protein PspA
1442	 48.00	0	1500403..1500627	+	74	157157209	pspB	EcE24377A_1515	-	phage shock protein B
1443	 50.28	0	1500627..1500986	+	119	157157559	pspC	EcE24377A_1516	-	DNA-binding transcriptional activator PspC
1444	 54.50	0	1500995..1501216	+	73	157157984	pspD	EcE24377A_1517	-	peripheral inner membrane phage-shock protein
1445	 50.79	0	1501291..1501605	+	104	157157175	pspE	EcE24377A_1518	-	thiosulfate:cyanide sulfurtransferase (rhodanese)
50.48	MEAN

5.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.