version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 908 50.89 0 1067809..1068936 + 375 117623213 ycdO APECO1_108 - hypothetical protein 909 53.69 0 1068942..1070213 + 423 117623214 ycdB APECO1_110 - hypothetical protein 910 52.60 0 1070704..1071627 + 307 117623215 phoH APECO1_111 - hypothetical protein 911 43.72 -1 1071677..1072090 - 137 117623216 ycdP APECO1_112 - inner membrane protein 912 46.98 0 1072092..1073417 - 441 117623217 ycdQ APECO1_113 - N-glycosyltransferase PgaC 913 44.43 -1 1073410..1075428 - 672 117623218 ycdR APECO1_114 - hypothetical protein 914 46.95 0 1075437..1077860 - 807 117623219 ycdS APECO1_115 - outer membrane protein PgaA 915 38.01 -2 1078448..1079815 + 455 117623220 ycdT APECO1_116 - diguanylate cyclase 916 51.23 0 1080202..1081179 + 325 117623222 ycdW APECO1_118 - putative dehydrogenase 917 48.78 0 1081234..1081971 + 245 117623223 ycdX APECO1_119 - putative hydrolase 918 53.87 0 1081995..1082549 + 184 117623224 ycdY APECO1_120 - hypothetical protein 919 54.07 0 1082603..1083142 + 179 117623225 ycdZ APECO1_121 - hypothetical protein 920 50.24 0 1083207..1084040 - 277 117623226 csgG APECO1_122 - assembly /transport component in curli production 921 42.93 -1 1084067..1084483 - 138 117623227 csgF APECO1_123 - curli assembly protein CsgF 922 42.82 -1 1084508..1084897 - 129 117623228 csgE APECO1_124 - curli assembly protein CsgE 923 41.78 -1 1084902..1085552 - 216 117623229 csgD APECO1_125 - DNA-binding transcriptional regulator CsgD 924 42.24 -1 1086278..1086760 + 160 117623230 csgB APECO1_126 - curlin minor subunit 925 51.32 0 1086801..1087256 + 151 117623231 csgA APECO1_127 - cryptic curlin major subunit 926 44.51 -1 1087156..1087647 + 163 117623232 csgC APECO1_128 - putative autoagglutination protein 927 45.51 -1 1087768..1088079 + 103 117623233 ymdA APECO1_129 - hypothetical protein 928 52.06 0 1088174..1088707 + 177 117623234 ymdB APECO1_130 - hypothetical protein 929 50.20 0 1088649..1090130 + 493 117623235 ymdC APECO1_131 - putative synthase 930 44.39 -1 1090138..1091295 - 385 117623236 mdoC APECO1_132 - glucans biosynthesis protein 931 49.23 0 1091671..1093224 + 517 117623237 mdoG APECO1_133 - glucan biosynthesis protein G 932 54.82 0 1093187..1095760 + 857 117623238 modH APECO1_134 - glucosyltransferase MdoH 933 50.53 0 1096160..1096537 - 125 117623239 msyB APECO1_135 - hypothetical protein 934 52.40 0 1096617..1097843 - 408 117623240 yceE APECO1_136 - drug efflux system protein MdtG 935 53.42 0 1098015..1098935 - 306 117623241 htrB APECO1_137 - lipid A biosynthesis lauroyl acyltransferase 936 48.81 0 1099160..1100212 + 350 117623242 yceA APECO1_138 - hypothetical protein 937 46.35 0 1100254..1100829 - 191 117623243 yceI APECO1_139 - hypothetical protein 938 51.15 0 1100833..1101399 - 188 117623244 yceJ APECO1_140 - YceJ 939 52.37 0 1101821..1102939 - 372 117623245 solA APECO1_141 - N-methyltryptophan oxidase 940 44.96 -1 1103054..1103311 - 85 117623246 bssS APECO1_142 - biofilm formation regulatory protein BssS 941 46.03 -1 1103598..1103975 - 125 117623247 dinI APECO1_143 - DNA damage-inducible protein I 942 53.30 0 1103917..1104963 - 348 117623248 pyrC APECO1_144 - dihydroorotase 943 47.57 0 1105069..1105686 - 205 117623249 yceB APECO1_145 - hypothetical protein 944 48.92 0 1105763..1106410 - 215 117623250 grxB APECO1_146 - glutaredoxin 2 945 55.45 0 1106474..1107712 - 412 117623251 yceL APECO1_147 - multidrug resistance protein MdtH 946 49.40 0 1107918..1108502 + 194 117623252 rimJ APECO1_148 - ribosomal-protein-S5-alanine N-acetyltransferase 947 52.16 0 1108513..1109160 + 215 117623253 yceH APECO1_149 - hypothetical protein 948 55.09 0 1109162..1110085 + 307 117623254 mviM APECO1_150 - hypothetical protein 949 53.32 0 1110195..1111730 + 511 117623255 mviN APECO1_151 - hypothetical protein 950 48.20 0 1111770..1112186 - 138 117623256 flgN APECO1_152 - flagella synthesis protein FlgN 951 51.70 0 1112191..1112484 - 97 117623257 flgM APECO1_153 - anti-sigma28 factor FlgM 952 52.58 0 1112560..1113219 - 219 117623258 flgA APECO1_154 - flagellar basal body P-ring biosynthesis protein FlgA 953 52.76 0 1113374..1113790 + 138 117623259 flgB APECO1_155 - flagellar basal body rod protein FlgB 954 53.09 0 1113794..1114198 + 134 117623260 flgC APECO1_156 - flagellar basal body rod protein FlgC 955 54.31 0 1114210..1114905 + 231 117623261 flgD APECO1_157 - flagellar basal body rod modification protein 956 51.33 0 1114930..1116135 + 401 117623262 flgE APECO1_158 - flagellar hook protein FlgE 957 59.13 +1 1116155..1116910 + 251 117623263 flgF APECO1_159 - flagellar basal body rod protein FlgF 958 53.64 0 1117082..1117864 + 260 117623264 flgG APECO1_160 - flagellar basal body rod protein FlgG 959 52.68 0 1117908..1118615 + 235 117623265 flgH APECO1_161 - flagellar basal body L-ring protein 960 54.22 0 1118624..1119724 + 366 117623266 flgI APECO1_162 - flagellar basal body P-ring protein 961 54.03 0 1119724..1120665 + 313 162317581 flgJ APECO1_163 - peptidoglycan hydrolase 962 52.01 0 1120731..1122374 + 547 117623268 flgK APECO1_164 - flagellar hook-associated protein FlgK 963 50.52 0 1122386..1123339 + 317 117623269 flgL APECO1_165 - flagellar hook-associated protein FlgL 964 55.74 +1 1123534..1126719 - 1061 117623270 rne APECO1_166 - ribonuclease E 965 46.67 0 1126800..1127174 + 124 117623271 - APECO1_167 - hypothetical protein 966 51.77 0 1127292..1128251 + 319 117623272 - APECO1_168 - 23S rRNA pseudouridylate synthase C 967 48.88 0 1128363..1128986 - 207 117623273 yceF APECO1_169 - Maf-like protein 968 49.43 0 1129146..1129667 + 173 117623274 yceD APECO1_170 - hypothetical protein 969 52.07 0 1130003..1131043 + 346 117623275 pslX APECO1_171 - putative glycerol-3-phosphate acyltransferase PlsX 970 54.40 0 1131111..1132064 + 317 117623276 fabH APECO1_172 - 3-oxoacyl-(acyl carrier protein) synthase III 971 54.41 0 1132080..1133009 + 309 117623277 fabD APECO1_173 - malonyl-CoA-[acyl-carrier-protein] transacylase 972 51.56 0 1133022..1133756 + 244 117623278 fabG APECO1_174 - 3-ketoacyl-(acyl-carrier-protein) reductase 973 45.39 -1 1133913..1134194 - 93 117623279 - APECO1_175 - hypothetical protein 974 53.38 0 1134290..1135531 + 413 117623280 fabF APECO1_176 - 3-oxoacyl-(acyl carrier protein) synthase II 975 50.74 0 1135651..1136460 + 269 117623281 pabC APECO1_177 - 4-amino-4-deoxychorismate lyase 976 50.83 0 1136463..1137485 + 340 117623282 yceG APECO1_178 - hypothetical protein 977 54.05 0 1137475..1138116 + 213 117623283 tdk APECO1_179 - thymidylate kinase 978 54.23 0 1138113..1139117 + 334 117623284 holB APECO1_180 - DNA polymerase III subunit delta' 979 51.38 0 1139128..1139925 + 265 117623285 ycfH APECO1_181 - putative metallodependent hydrolase 980 52.58 0 1140220..1141653 + 477 117623286 ptsG APECO1_182 - glucose-specific PTS system IIBC components 981 49.86 0 1141713..1143902 - 729 117623287 fhuE APECO1_183 - ferric-rhodotorulic acid outer membrane transporter 982 50.28 0 1144236..1144595 + 119 117623288 ycfF APECO1_184 - purine nucleoside phosphoramidase 983 49.47 0 1144598..1144975 + 125 117623289 ycfL APECO1_185 - hypothetical protein 984 54.98 0 1144989..1145630 + 213 117623290 - APECO1_186 - hypothetical protein 985 53.33 0 1145611..1146435 + 274 117623291 thiK APECO1_187 - thiamine kinase 986 52.14 0 1146446..1147471 + 341 117623292 nagZ APECO1_188 - beta-hexosaminidase 987 47.33 0 1147437..1148036 + 199 117623293 ycfP APECO1_189 - hypothetical protein 988 53.08 0 1148459..1149739 + 426 117623294 ndh APECO1_190 - NADH dehydrogenase 989 53.70 0 1149966..1150505 + 179 117623295 ycfJ APECO1_191 - hypothetical protein 990 50.63 0 1150567..1151277 - 236 117623296 ycfQ APECO1_192 - putative transcriptional regulator 991 46.90 0 1151440..1151697 + 85 117623297 ycfR APECO1_193 - hypothetical protein 992 53.58 0 1151779..1152741 - 320 117623298 ycfS APECO1_194 - hypothetical protein 993 54.62 0 1152886..1156380 - 1164 117623299 mfd APECO1_195 - transcription-repair coupling factor 994 48.79 0 1156460..1157533 - 357 117623300 ycfT APECO1_196 - hypothetical protein 995 54.41 0 1157690..1158994 + 434 117623301 ycfU APECO1_197 - outer membrane-specific lipoprotein transporter subunit LolC 996 56.07 +1 1158849..1159688 + 279 117623302 lolD APECO1_198 - lipoprotein transporter ATP-binding subunit 997 52.05 0 1159688..1160932 + 414 117623303 ycfW APECO1_199 - outer membrane-specific lipoprotein transporter subunit LolE 998 52.96 0 1160961..1161872 + 303 117623304 ycfX APECO1_200 - N-acetyl-D-glucosamine kinase 999 50.85 0 1161888..1162709 + 273 117623305 cobB APECO1_201 - NAD-dependent deacetylase 1000 44.67 -1 1162847..1163737 - 296 117623306 ycfZ APECO1_202 - hypothetical protein 1001 42.66 -1 1163632..1164135 - 167 117623307 ymfA APECO1_203 - putative inner membrane protein 1002 51.10 0 1164151..1165197 - 348 117623308 potD APECO1_204 - spermidine/putrescine ABC transporter periplasmic substrate-binding protein 1003 50.19 0 1165194..1165988 - 264 117623309 potC APECO1_206 - spermidine/putrescine ABC transporter membrane protein 1004 50.70 0 1165985..1166842 - 285 117623310 potB APECO1_207 - spermidine/putrescine ABC transporter membrane protein 1005 51.19 0 1166826..1167962 - 378 117623311 potA APECO1_208 - putrescine/spermidine ABC transporter ATPase protein 1006 50.53 0 1168212..1169438 + 408 117623312 pepT APECO1_209 - peptidase T 1007 53.93 0 1169487..1170617 - 376 117623313 ycfD APECO1_210 - hypothetical protein 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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