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Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 815 51.76 0 954178..954432 + 84 117623120 ogr APECO1_14 - DNA-binding transcriptional regulator 816 51.20 0 954751..957033 - 760 117623121 pflB APECO1_15 - PflB 817 43.27 -1 957088..958284 - 398 117623122 focA APECO1_16 - formate transporter 818 50.79 0 958351..960120 - 589 117623123 ycaO APECO1_17 - YcaO 819 47.62 0 960241..960933 + 230 117623124 ycaP APECO1_18 - YcaP 820 49.68 0 961132..962220 + 362 117623125 serC APECO1_19 - phosphoserine aminotransferase 821 49.92 0 962291..963574 + 427 117623126 aroA APECO1_20 - 3-phosphoshikimate 1-carboxyvinyltransferase 822 48.84 0 963735..964508 + 257 117623127 ycaL APECO1_21 - YcaL 823 53.65 0 964681..965364 + 227 117623128 cmk APECO1_22 - cytidylate kinase 824 51.25 0 965475..967148 + 557 117623129 rpsA APECO1_23 - 30S ribosomal protein S1 825 48.22 0 967317..967625 - 102 117623130 - APECO1_24 - hypothetical protein 826 49.89 0 967798..969663 + 621 117623131 ycaI APECO1_25 - YcaI 827 50.43 0 970093..971841 + 582 117623132 msbA APECO1_26 - lipid transporter ATP-binding/permease protein 828 55.22 0 971838..972824 + 328 117623133 lpxK APECO1_27 - tetraacyldisaccharide 4'-kinase 829 52.55 0 972861..974093 + 410 117623134 ycaQ APECO1_28 - YcaQ 830 48.89 0 974150..974419 - 89 117623135 - APECO1_29 - hypothetical protein 831 52.61 0 974324..975070 + 248 117623136 kdsB APECO1_30 - 3-deoxy-manno-octulosonate cytidylyltransferase 832 51.90 0 975224..976117 + 297 117623137 ycbJ APECO1_31 - hypothetical protein 833 52.18 0 976094..976873 - 259 117623138 ycbC APECO1_32 - hypothetical protein 834 51.63 0 976997..977794 + 265 117623139 smtA APECO1_33 - putative metallothionein SmtA 835 52.53 0 977791..979113 + 440 117623140 mukF APECO1_34 - condesin subunit F 836 51.78 0 979067..979798 + 243 117623141 mukE APECO1_35 - condesin subunit E 837 55.55 0 979798..984258 + 1486 117623142 mukB APECO1_36 - cell division protein MukB 838 52.87 0 984519..986366 + 615 117623143 ycbB APECO1_37 - hypothetical protein 839 50.64 0 986547..987095 + 182 117623144 ycbK APECO1_38 - YcbK 840 51.85 0 987122..987769 + 215 117623145 ycbL APECO1_39 - YcbL 841 52.31 0 987819..989009 - 396 117623146 aspC APECO1_40 - aromatic amino acid aminotransferase 842 47.75 0 989194..990282 - 362 117623147 ompF APECO1_41 - outer membrane protein F 843 52.46 0 990884..992284 - 466 162317582 asnC APECO1_42 - asparaginyl-tRNA synthetase 844 51.56 0 992453..993703 - 416 117623149 pncB APECO1_43 - nicotinate phosphoribosyltransferase 845 53.43 0 993921..996533 + 870 117623150 pepN APECO1_44 - aminopeptidase N 846 56.51 +1 996728..997495 - 255 117623151 ssuB APECO1_45 - aliphatic sulfonates transport ATP-binding subunit 847 54.97 0 997492..998286 - 264 117623152 ssuC APECO1_46 - alkanesulfonate transporter permease subunit 848 56.98 +1 998295..999440 - 381 117623153 ssuD APECO1_47 - alkanesulfonate monooxygenase 849 52.69 0 999437..1000438 - 333 117623154 ssuA APECO1_48 - alkanesulfonate transporter substrate-binding subunit 850 54.34 0 1000389..1000964 - 191 117623155 ssuE APECO1_49 - NAD(P)H-dependent FMN reductase 851 46.29 0 1001201..1002211 + 336 117623156 pyrD APECO1_50 - dihydroorotate dehydrogenase 2 852 48.19 0 1002349..1002927 + 192 117623157 ycbW APECO1_51 - hypothetical protein 853 50.18 0 1002924..1004033 - 369 117623158 ycbX APECO1_52 - YcbX 854 54.43 0 1004131..1006239 + 702 117623159 ycbY APECO1_53 - 23S rRNA m(2)G2445 methyltransferase 855 52.10 0 1006251..1008158 + 635 117623160 uup APECO1_55 - ABC transporter ATPase component 856 51.91 0 1008288..1009541 + 417 117623161 pqiA APECO1_56 - paraquat-inducible protein A 857 50.09 0 1009528..1011186 + 552 117623162 pqiB APECO1_57 - paraquat-inducible protein B 858 52.84 0 1011183..1011746 + 187 117623163 - APECO1_58 - hypothetical protein 859 51.60 0 1012239..1012955 - 238 117623164 fabA APECO1_59 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 860 52.24 0 1012826..1014412 - 528 117623165 ycbZ APECO1_60 - YcbZ 861 47.02 0 1014772..1015224 + 150 117623166 ycbG APECO1_61 - hypothetical protein 862 52.11 0 1015302..1016414 - 370 117623167 ompA APECO1_62 - outer membrane protein A 863 48.43 0 1016698..1017207 - 169 117623168 sulA APECO1_63 - SOS cell division inhibitor 864 47.78 0 1017426..1018055 + 209 117623169 yccR APECO1_64 - hypothetical protein 865 51.92 0 1018018..1020180 - 720 117623170 yccS APECO1_65 - YccS 866 48.77 0 1020190..1020636 - 148 117623171 yccF APECO1_66 - hypothetical protein 867 51.96 0 1020666..1022813 + 715 117623172 helD APECO1_67 - DNA helicase IV 868 51.28 0 1022845..1023312 - 155 117623173 mgsA APECO1_68 - methylglyoxal synthase 869 50.23 0 1023399..1024061 - 220 117623174 - APECO1_69 - hypothetical protein 870 54.06 0 1024180..1024647 + 155 117623175 - APECO1_70 - hypothetical protein 871 53.39 0 1024692..1025060 - 122 117623176 - APECO1_71 - hypothetical protein 872 51.81 0 1025067..1026257 - 396 117623177 yccW APECO1_72 - hypothetical protein 873 51.22 0 1026139..1026630 + 163 117623178 yccX APECO1_73 - putative acylphosphatase 874 46.97 0 1026627..1026956 - 109 117623179 yccK APECO1_74 - sulfurtransferase TusE 875 51.52 0 1027048..1027707 - 219 117623180 yccA APECO1_75 - hypothetical protein 876 56.20 +1 1028401..1029546 + 381 117623181 hyaA APECO1_76 - hydrogenase 1, small subunit 877 56.19 +1 1029543..1031336 + 597 117623182 hyaB APECO1_77 - hydrogenase 1 large subunit 878 51.55 0 1031355..1032062 + 235 117623183 hyaC APECO1_78 - hydrogenase 1 b-type cytochrome subunit 879 59.35 +1 1032059..1032646 + 195 117623184 hyaD APECO1_79 - hydrogenase 1 maturation protease 880 54.89 0 1032643..1033041 + 132 117623185 hyaE APECO1_80 - hydrogenase-1 operon protein HyaE 881 55.34 0 1032978..1033895 + 305 117623186 hyaF APECO1_81 - hydrogenase-1 operon protein HyaF 882 53.90 0 1034023..1035573 + 516 117623187 appC APECO1_82 - cytochrome bd-II oxidase, subunit I 883 53.12 0 1035585..1036721 + 378 117623188 appB APECO1_83 - cytochrome bd-II oxidase, subunit II 884 53.69 0 1036876..1038216 + 446 117623189 appA APECO1_84 - phosphoanhydride phosphorylase 885 48.60 0 1039530..1040603 - 357 117623190 yccM APECO1_85 - putative electron transport protein YccM 886 54.04 0 1040686..1043418 - 910 117623191 torS APECO1_86 - hybrid sensory histidine kinase TorS 887 53.16 0 1043501..1044529 + 342 117623192 torT APECO1_87 - periplasmic sensory protein associated with the TorRS two-component regulatory system 888 53.54 0 1044502..1045194 - 230 117623193 torR APECO1_88 - DNA-binding transcriptional regulator TorR 889 51.41 0 1045324..1046496 + 390 117623194 torC APECO1_89 - cytochrome c-type protein TorC 890 55.28 0 1046496..1049042 + 848 117623195 torA APECO1_90 - trimethylamine-N-oxide reductase 1 precursor 891 52.29 0 1049006..1049638 + 210 117623196 torD APECO1_91 - chaperone protein TorD 892 54.90 0 1049994..1050299 - 101 117623197 yccD APECO1_92 - chaperone-modulator protein CbpM 893 53.20 0 1050299..1051219 - 306 117623198 cbpA APECO1_93 - curved DNA-binding protein CbpA 894 51.05 0 1051754..1052995 + 413 117623199 agp APECO1_94 - glucose-1-phosphatase/inositol phosphatase 895 53.94 0 1053281..1053877 - 198 117623200 wrbA APECO1_95 - TrpR binding protein WrbA 896 53.74 0 1054506..1055201 - 231 117623201 ycdG APECO1_96 - transport protein 897 54.10 0 1055198..1055794 - 198 117623202 - APECO1_97 - hypothetical protein 898 57.64 +1 1055749..1056324 - 191 117623203 ycdH APECO1_98 - oxidoreductase, flavin:NADH component 899 56.68 +1 1056254..1056844 - 196 117623204 ycdI APECO1_99 - hypothetical protein 900 57.68 +1 1056854..1057654 - 266 117623205 rarA APECO1_100 - hydrolase 901 53.75 0 1057662..1058048 - 128 117623206 ycdK APECO1_101 - hypothetical protein 902 56.33 +1 1058060..1058794 - 244 117623207 - APECO1_102 - hypothetical protein 903 54.83 0 1058752..1059900 - 382 117623208 ycdM APECO1_103 - putative monooxygenase YcdM 904 50.70 0 1060130..1060768 + 212 117623209 ycdC APECO1_104 - transcriptional regulator YcdC 905 56.17 +1 1060808..1064770 - 1320 117623210 putA APECO1_105 - trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 906 53.55 0 1065193..1066701 + 502 117623211 putP APECO1_106 - proline:sodium symporter 907 54.05 0 1066912..1067751 + 279 117623212 ycdN APECO1_107 - hypothetical protein 908 50.89 0 1067809..1068936 + 375 117623213 ycdO APECO1_108 - hypothetical protein 909 53.69 0 1068942..1070213 + 423 117623214 ycdB APECO1_110 - hypothetical protein 910 52.60 0 1070704..1071627 + 307 117623215 phoH APECO1_111 - hypothetical protein 911 43.72 -1 1071677..1072090 - 137 117623216 ycdP APECO1_112 - inner membrane protein 912 46.98 0 1072092..1073417 - 441 117623217 ycdQ APECO1_113 - N-glycosyltransferase PgaC 913 44.43 -1 1073410..1075428 - 672 117623218 ycdR APECO1_114 - hypothetical protein 914 46.95 0 1075437..1077860 - 807 117623219 ycdS APECO1_115 - outer membrane protein PgaA 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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