version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 448 43.50 -1 531627..532049 - 140 117622748 - APECO1_1524 - hypothetical protein 449 48.48 0 532135..533151 - 338 117622749 - APECO1_1523 - adhesin/invasin-like protein 450 42.70 -1 533518..533880 + 120 117622750 - APECO1_1522 - hypothetical protein 451 57.52 +1 533983..534441 - 152 117622751 ybbJ APECO1_1521 - hypothetical protein 452 52.61 0 534438..535355 - 305 117622752 ybbK APECO1_1520 - putative protease YbbK 453 45.43 -1 535501..536178 + 225 117622753 ybbL APECO1_1519 - putative ABC transporter ATP-binding protein YbbL 454 46.22 0 536138..536944 + 268 117622754 ybbM APECO1_1518 - putative metal resistance protein 455 55.33 0 537007..537897 - 296 117622755 ybbN APECO1_1517 - thioredoxin domain-containing protein 456 53.70 0 537922..538731 - 269 117622756 ybbO APECO1_1516 - short chain dehydrogenase 457 52.97 0 538721..539377 - 218 117622757 tesA APECO1_1515 - multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 458 55.75 +1 539315..540001 + 228 117622758 ybbA APECO1_1513 - putative ABC transporter ATP-binding protein YbbA 459 57.81 +1 539998..542412 + 804 117622759 ybbP APECO1_1512 - hypothetical protein 460 55.25 0 542471..543565 - 364 117622760 ybbB APECO1_1511 - tRNA 2-selenouridine synthase 461 52.32 0 543634..544560 - 308 117622761 ybbS APECO1_1510 - DNA-binding transcriptional activator AllS 462 50.10 0 544790..545272 + 160 117622762 allA APECO1_1509 - ureidoglycolate hydrolase 463 52.94 0 545350..546165 + 271 117622763 ybbU APECO1_1508 - DNA-binding transcriptional repressor AllR 464 52.51 0 546165..548036 + 623 117622764 gcl APECO1_1507 - glyoxylate carboligase 465 44.27 -1 548049..548825 + 258 117622765 hyi APECO1_1506 - hydroxypyruvate isomerase 466 50.63 0 548925..549803 + 292 117622766 ybbQ APECO1_1505 - 2-hydroxy-3-oxopropionate reductase 467 47.22 0 549973..551427 + 484 117622767 ybbW APECO1_1504 - allantoin permease 468 51.54 0 551487..552848 + 453 117622768 allB APECO1_1503 - allantoinase 469 51.45 0 552898..554205 + 435 117622769 ybbY APECO1_1502 - putative purine permease YbbY 470 56.20 +1 554227..555372 + 381 117622770 glxK APECO1_1501 - glycerate kinase II 471 46.18 -1 555501..556286 - 261 117622771 ylbA APECO1_1500 - hypothetical protein 472 51.70 0 556297..557532 - 411 117622772 allC APECO1_1499 - allantoate amidohydrolase 473 52.29 0 557554..558603 - 349 117622773 allD APECO1_1498 - ureidoglycolate dehydrogenase 474 55.58 0 558920..560587 + 555 117622774 fdrA APECO1_1497 - membrane protein FdrA 475 57.30 +1 560597..561856 + 419 117622775 ylbE APECO1_1496 - hypothetical protein 476 57.60 +1 561867..562682 + 271 117622776 ylbF APECO1_1495 - hypothetical protein 477 57.38 +1 562679..563572 + 297 117622777 arcC APECO1_1494 - carbamate kinase 478 56.09 +1 563725..564792 - 355 117622778 purK APECO1_1493 - phosphoribosylaminoimidazole carboxylase ATPase subunit 479 58.24 +1 564789..565298 - 169 117622779 purE APECO1_1492 - phosphoribosylaminoimidazole carboxylase catalytic subunit 480 44.55 -1 565394..565723 - 109 117622780 - APECO1_1491 - hypothetical protein 481 53.80 0 565834..566556 - 240 117622781 ybbF APECO1_1490 - UDP-2,3-diacylglucosamine hydrolase 482 54.33 0 567227..568612 + 461 117622783 cysS APECO1_1488 - cysteinyl-tRNA synthetase 483 52.87 0 568648..569169 - 173 117622784 - APECO1_1487 - hypothetical protein 484 54.56 0 569491..570357 - 288 117622785 folD APECO1_1486 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 485 48.03 0 570712..571092 - 126 117622786 intD APECO1_1485 - prophage DLP12 integrase 486 47.79 0 571040..571447 - 135 117622787 intD APECO1_1484 - prophage DLP12 integrase 487 40.99 -2 571757..572422 - 221 117622788 ybcY APECO1_1483 - hypothetical protein 488 43.50 -1 572657..573610 - 317 117622789 ompT APECO1_1482 - outer membrane protease 489 51.74 0 574268..575158 - 296 117622790 ybcH APECO1_1481 - hypothetical protein 490 55.13 0 575159..578131 - 990 117622791 nfrA APECO1_1480 - bacteriophage N4 receptor, outer membrane subunit 491 52.37 0 578118..580355 - 745 117622792 nfrB APECO1_1479 - bacteriophage N4 adsorption protein B 492 51.84 0 580505..581947 - 480 117622793 cusS APECO1_1478 - sensor kinase CusS 493 54.53 0 581937..582620 - 227 117622794 ylcA APECO1_1477 - DNA-binding transcriptional activator CusR 494 51.55 0 582777..584159 + 460 117622795 cusC APECO1_1476 - copper/silver efflux system outer membrane protein CusC 495 45.05 -1 584183..584515 + 110 117622796 - APECO1_1475 - periplasmic copper-binding protein 496 55.80 +1 584531..585754 + 407 117622797 cusB APECO1_1474 - copper/silver efflux system membrane fusion protein CusB 497 55.60 0 585766..588909 + 1047 117622798 cusA APECO1_1473 - copper/silver efflux system, membrane component 498 52.87 0 588975..590387 + 470 117622799 pheP APECO1_1472 - phenylalanine transporter 499 47.76 0 590469..591716 - 415 117622800 ybdG APECO1_1471 - hypothetical protein 500 51.83 0 591824..592477 - 217 117622801 nfnB APECO1_1470 - dihydropteridine reductase 501 47.40 0 592556..592939 - 127 117622802 ybdF APECO1_1469 - hypothetical protein 502 51.74 0 593318..594436 - 372 117622803 ybdK APECO1_1468 - carboxylate-amine ligase 503 44.44 -1 594652..594921 - 89 117622804 - APECO1_1467 - hypothetical protein 504 48.51 0 595164..595934 - 256 117622805 entD APECO1_1466 - phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 505 53.66 0 596253..598259 - 668 117622806 fepA APECO1_1465 - ferrienterobactin receptor precursor 506 55.03 0 598442..599644 + 400 117622807 fes APECO1_1464 - enterobactin/ferric enterobactin esterase 507 56.54 +1 599724..603743 + 1339 117622808 entF APECO1_1463 - enterobactin synthase subunit F 508 44.66 -1 603839..605092 + 417 117622809 fepE APECO1_1462 - ferric enterobactin transport protein FepE 509 56.00 +1 605089..606222 - 377 117622810 fepC APECO1_1461 - iron-enterobactin transporter ATP-binding protein 510 57.60 +1 605901..606893 - 330 117622811 fepG APECO1_1460 - iron-enterobactin transporter permease 511 59.98 +1 606890..607906 - 338 117622812 fepD APECO1_1459 - iron-enterobactin transporter membrane protein 512 57.71 +1 608005..609255 + 416 117622813 ybdA APECO1_1458 - enterobactin exporter EntS 513 55.69 +1 609259..610215 - 318 117622814 fepB APECO1_1457 - iron-enterobactin transporter periplasmic binding protein 514 55.81 +1 610392..611579 + 395 117622815 entC APECO1_1456 - isochorismate synthase 515 56.49 +1 611589..613199 + 536 117622816 entE APECO1_1455 - enterobactin synthase subunit E 516 54.90 0 613213..614070 + 285 117622817 entB APECO1_1454 - 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase 517 57.01 +1 614040..614816 + 258 117622818 entA APECO1_1453 - 2,3-dihydroxybenzoate-2,3-dehydrogenase 518 58.45 +1 614819..615232 + 137 117622819 - APECO1_1452 - hypothetical protein 519 57.17 +1 615413..617518 + 701 117622820 cstA APECO1_1451 - carbon starvation protein 520 55.37 0 617838..618926 - 362 117622821 ybdH APECO1_1450 - hypothetical protein 521 54.18 0 618998..620206 + 402 117622822 ybdL APECO1_1449 - putative aminotransferase 522 46.35 0 620207..620836 - 209 117622823 ybdM APECO1_1448 - hypothetical protein 523 46.52 0 620809..622029 - 406 117622824 ybdN APECO1_1447 - hypothetical protein 524 37.17 -2 622176..623114 - 312 117622825 ybdO APECO1_1446 - putative transcriptional regulator YbdO 525 46.10 -1 623283..624089 - 268 117622826 dsbG APECO1_1445 - disulfide isomerase/thiol-disulfide oxidase 526 49.65 0 624401..624964 + 187 117622827 ahpC APECO1_1444 - alkyl hydroperoxide reductase subunit C 527 52.44 0 625105..626700 + 531 117622828 ahpF APECO1_1443 - alkyl hydroperoxide reductase subunit F 528 47.62 0 626822..627283 - 153 117622829 uspG APECO1_1442 - universal stress protein UspG 529 54.99 0 627606..628016 - 136 117622830 rnk APECO1_1441 - nucleoside diphosphate kinase regulator 530 50.67 0 628246..629070 - 274 117622831 rna APECO1_1440 - ribonuclease I 531 51.02 0 629166..630629 - 487 117622832 ybdS APECO1_1439 - citrate carrier/transporter 532 54.38 0 630680..631558 - 292 117622833 citG APECO1_1438 - triphosphoribosyl-dephospho-CoA synthase 533 58.51 +1 631533..632084 - 183 117622834 citX APECO1_1437 - 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase 534 56.13 +1 632088..633662 - 524 117622835 citF APECO1_1436 - citrate lyase alpha chain 535 57.25 +1 633631..634554 - 307 117622836 citE APECO1_1435 - citrate lyase beta chain 536 49.48 0 634847..635992 - 381 117622837 citC APECO1_1434 - citrate lyase synthetase (citrate (pro-3S)-lyase ligase) 537 49.61 0 636284..637942 + 552 117622838 dpiB APECO1_1433 - sensor kinase DpiB 538 50.81 0 637911..638591 + 226 117622839 citB APECO1_1432 - two-component response regulator DpiA 539 50.94 0 638632..640017 - 461 117622840 dcuC APECO1_1431 - C4-dicarboxylate transporter DcuC 540 46.70 0 640604..641164 + 186 117622841 crcA APECO1_1430 - palmitoyl transferase for Lipid A 541 49.22 0 641602..641985 - 127 117622842 crcB APECO1_1429 - camphor resistance protein CrcB 542 53.71 0 642075..642869 + 264 117622843 ybeM APECO1_1428 - putative amidase 543 53.62 0 643301..644266 - 321 117622844 lipA APECO1_1427 - lipoyl synthase 544 42.98 -1 644485..644826 - 113 117622845 - APECO1_1426 - hypothetical protein 545 47.40 0 645086..645661 - 191 117622846 lipB APECO1_1425 - lipoyltransferase 546 46.21 -1 645828..646091 - 87 117622847 - APECO1_1424 - hypothetical protein 547 49.83 0 646201..647412 - 403 117622848 dacA APECO1_1423 - D-alanyl-D-alanine carboxypeptidase fraction A 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0