version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 4005 40.64 -2 4608392..4610212 - 606 117626335 - APECO1_2402 - putative transport sensor protein 4006 47.00 0 4610420..4611202 + 260 117626336 aphA APECO1_2401 - acid phosphatase/phosphotransferase 4007 51.80 0 4611313..4611729 + 138 117626337 yjbQ APECO1_2400 - hypothetical protein 4008 51.54 0 4611733..4612089 + 118 117626338 yjbR APECO1_2399 - hypothetical protein 4009 55.83 +1 4612124..4614946 - 940 117626339 uvrA APECO1_2398 - excinuclease ABC subunit A 4010 58.29 +1 4615200..4615736 + 178 162317560 ssb APECO1_2397 - single-strand DNA-binding protein 4011 53.28 0 4615835..4616185 - 116 117626341 yjcB APECO1_2396 - hypothetical protein 4012 44.74 -1 4616545..4618131 + 528 117626342 yjcC APECO1_2395 - signal transduction protein YjcC 4013 51.18 0 4618543..4619007 + 154 117626343 soxR APECO1_2394 - redox-sensitive transcriptional activator SoxR 4014 55.63 0 4619554..4620903 + 449 117626344 yjcD APECO1_2393 - putative xanthine/uracil permeases family protein YjcD 4015 55.45 0 4621054..4622703 + 549 117626345 yjcE APECO1_2392 - putative sodium/hydrogen exchanger family protein YjcE 4016 50.06 0 4622739..4623623 - 294 117626346 - APECO1_2391 - LysR family transcriptional regulator 4017 52.55 0 4623727..4624137 + 136 117626347 - APECO1_2390 - murein hydrolase exporter 4018 53.33 0 4624130..4624819 + 229 117626348 - APECO1_2389 - LrgB family murein hydrolase regulator 4019 54.97 0 4624858..4626507 - 549 117626349 actP APECO1_2388 - acetate permease 4020 50.31 0 4626504..4626821 - 105 117626350 yjcH APECO1_2387 - hypothetical protein 4021 57.07 +1 4627110..4629068 - 652 117626351 acs APECO1_2386 - acetyl-CoA synthetase 4022 52.61 0 4629460..4630896 + 478 117626352 nrfA APECO1_2385 - cytochrome c nitrite reductase 4023 54.28 0 4630935..4631507 + 190 117626353 nrfB APECO1_2384 - cytochrome c-type protein NrfB 4024 58.18 +1 4631504..4632175 + 223 117626354 nrfC APECO1_2383 - formate-dependent nitire reductase subunit NrfC 4025 57.68 +1 4632172..4633128 + 318 117626355 nrfD APECO1_2382 - formate-dependent nitrite reductase, membrane subunit NrfD 4026 56.96 +1 4633208..4634866 + 552 117626356 nrfE APECO1_2381 - heme lyase subunit NrfE 4027 52.79 0 4635173..4635835 + 220 117626357 nrfG APECO1_2380 - formate-dependent nitrite reductase complex subunit NrfG 4028 53.73 0 4636178..4637491 + 437 117626358 gltP APECO1_2379 - glutamate/aspartate:proton symporter 4029 48.99 0 4637639..4638328 - 229 117626359 yjcO APECO1_2378 - hypothetical protein 4030 49.22 0 4638439..4639143 - 234 117626360 yddO APECO1_2377 - putative ABC transporter ATP-binding protein YddO 4031 53.10 0 4639130..4639999 - 289 117626361 yddP APECO1_2376 - putative ABC transporter transporter, ATP-binding protein 4032 55.88 +1 4639959..4640792 - 277 117626362 yddQ APECO1_2375 - putative ABC transporter permease protein YddQ 4033 54.42 0 4640792..4641934 - 380 117626363 yddR APECO1_2374 - putative ABC transporter permease protein YddR 4034 49.20 0 4641941..4643509 - 522 117626364 - APECO1_2373 - putative ABC transporter, periplasmic oligo-dipeptide/nickel binding protein 4035 53.93 0 4643884..4645563 - 559 117626365 fdhF APECO1_23722 - formate dehydrogenase-H, selenopolypeptide subunit 4036 54.76 0 4645612..4646031 - 139 117626366 fdhF APECO1_2372 - formate dehydrogenase-H, selenopolypeptide subunit 4037 55.96 +1 4646229..4647695 - 488 117626367 yjcP APECO1_2371 - putative outer membrane efflux protein MdtP 4038 54.53 0 4647692..4649743 - 683 117626368 yjcQ APECO1_2370 - multidrug efflux system protein MdtO 4039 56.10 +1 4649743..4650774 - 343 117626369 yjcR APECO1_2369 - multidrug resistance protein MdtN 4040 46.74 0 4650793..4651068 - 91 117626370 - APECO1_2368 - hypothetical protein 4041 52.45 0 4651276..4653273 - 665 117626371 yjcS APECO1_2367 - hypothetical protein 4042 53.66 0 4653536..4654465 - 309 117626372 yjcT APECO1_2366 - D-allose kinase 4043 47.99 0 4654449..4655144 - 231 117626373 yjcU APECO1_2365 - allulose-6-phosphate 3-epimerase 4044 53.67 0 4655155..4655862 - 235 117626374 alsC APECO1_2364 - D-allose transport system permease protein AlsC 4045 48.01 0 4656114..4657646 - 510 117626375 alsA APECO1_2363 - D-allose transporter ATP-binding protein 4046 48.30 0 4657773..4658714 - 313 117626376 - APECO1_2362 - D-allose transporter subunit 4047 47.94 0 4658767..4659690 - 307 117626377 rpiR APECO1_2361 - DNA-binding transcriptional repressor RpiR 4048 50.22 0 4660016..4660465 + 149 117626378 rpiB APECO1_2360 - ribose-5-phosphate isomerase B 4049 55.15 0 4660534..4660863 + 109 117626379 - APECO1_2359 - hypothetical protein 4050 59.55 +1 4660891..4661649 - 252 117626380 phnP APECO1_2358 - carbon-phosphorus lyase complex accessory protein 4051 57.47 +1 4661651..4662085 - 144 117626381 phnO APECO1_2357 - aminoalkylphosphonic acid N-acetyltransferase 4052 58.42 +1 4662072..4662629 - 185 117626382 phnN APECO1_2356 - ribose 1,5-bisphosphokinase 4053 59.72 +1 4662629..4663765 - 378 117626383 phnM APECO1_2355 - PhnM, carbon-phosphorus lyase complex subunit 4054 59.23 +1 4663762..4664541 - 259 117626384 phnL APECO1_2354 - phosphonates transport ATP-binding protein PhnL 4055 59.82 +1 4664553..4665311 - 252 117626385 phnK APECO1_2353 - phosphonates transport ATP-binding protein 4056 59.08 +1 4665410..4666081 + 223 117626386 phnJ APECO1_2352 - PhnJ, carbon-phosphorus lyase complex subunit 4057 59.01 +1 4666146..4667216 - 356 117626387 phnI APECO1_2351 - PhnI, carbon-phosphorus lyase complex subunit 4058 60.34 +1 4667210..4667794 - 194 117626388 phnH APECO1_2350 - carbon-phosphorus lyase complex subunit 4059 62.25 +2 4667791..4668243 - 150 117626389 phnG APECO1_2349 - PhnG, carbon-phosphorus lyase complex subunit 4060 61.75 +2 4668244..4668975 - 243 117626390 phnF APECO1_2348 - putative transcriptional regulator 4061 60.38 +2 4668990..4669832 - 280 117626391 phnE APECO1_2347 - PhnE, subunit of alkylphosphonate ABC transporter 4062 54.87 0 4669875..4670891 - 338 117626392 phnD APECO1_2346 - PhnD, subunit of alkylphosphonate ABC transporter 4063 57.92 +1 4670916..4671704 - 262 117626393 phnC APECO1_2345 - phosphonate/organophosphate ester transporter subunit 4064 51.35 0 4671837..4672280 - 147 117626394 phnB APECO1_2344 - hypothetical protein 4065 49.66 0 4672335..4672769 + 144 117626395 - APECO1_2343 - hypothetical protein 4066 51.01 0 4673178..4675406 + 742 117626396 yjdA APECO1_2342 - hypothetical protein 4067 56.74 +1 4675436..4676281 + 281 117626397 yjcZ APECO1_2341 - hypothetical protein 4068 50.17 0 4676545..4678047 + 500 117626398 proP APECO1_2340 - proline/glycine betaine transporter 4069 53.85 0 4678224..4679315 - 363 117626399 basS APECO1_2339 - sensor protein BasS/PmrB 4070 53.81 0 4679325..4679993 - 222 117626400 basR APECO1_2338 - DNA-binding transcriptional regulator BasR 4071 49.64 0 4679990..4681663 - 557 117626401 yjdB APECO1_2337 - putative cell division protein 4072 53.89 0 4681737..4683074 - 445 117626402 yjdE APECO1_2336 - arginine:agmatin antiporter 4073 41.60 -1 4683211..4683972 - 253 117626403 adiY APECO1_2335 - putative regulatory protein AdiY 4074 52.71 0 4684308..4686578 - 756 117626404 adiA APECO1_2334 - biodegradative arginine decarboxylase 4075 50.17 0 4686774..4687682 - 302 117626405 melR APECO1_2333 - DNA-binding transcriptional regulator MelR 4076 52.51 0 4687965..4689320 + 451 117626406 melA APECO1_2332 - alpha-galactosidase 4077 54.99 0 4689317..4689967 - 216 117626407 yjdF APECO1_2331 - hypothetical protein 4078 54.52 0 4690090..4691736 - 548 117626408 fumB APECO1_2330 - anaerobic class I fumarate hydratase (fumarase B) 4079 52.20 0 4691814..4693154 - 446 117626409 dcuB APECO1_2329 - anaerobic C4-dicarboxylate transporter 4080 49.44 0 4693725..4694444 - 239 117626410 yjdG APECO1_2328 - DNA-binding transcriptional activator DcuR 4081 50.06 0 4694441..4696072 - 543 117626411 yjdH APECO1_2327 - sensory histidine kinase DcuS 4082 41.76 -1 4696495..4696767 + 90 117626412 yjdJ APECO1_2326 - acyltransferase 4083 35.69 -2 4696995..4697291 + 98 117626413 yjdK APECO1_2325 - hypothetical protein 4084 47.63 0 4697611..4699128 - 505 117626414 lysS APECO1_2324 - lysyl-tRNA synthetase 4085 51.65 0 4699365..4700822 - 485 117626415 yjdL APECO1_2323 - putative peptide transporter 4086 47.51 0 4700881..4703067 - 728 117626416 cadA APECO1_2322 - lysine decarboxylase 1 4087 49.59 0 4703108..4704442 - 444 117626417 cadB APECO1_2321 - lysine/cadaverine antiporter 4088 42.24 -1 4704808..4706346 - 512 117626418 cadC APECO1_2320 - DNA-binding transcriptional activator CadC 4089 48.40 0 4707178..4707741 - 187 117626419 - APECO1_2319 - hypothetical protein 4090 50.83 0 4707826..4708248 - 140 117626420 - APECO1_2318 - hypothetical protein 4091 55.43 0 4708543..4709076 + 177 117626421 - APECO1_2317 - hypothetical protein 4092 58.07 +1 4709467..4709943 - 158 117626422 yeeS3 APECO1_2316 - putative radC-like protein YeeS 4093 55.64 0 4709994..4710401 + 135 117626423 - APECO1_2315 - hypothetical protein 4094 55.68 +1 4710703..4711521 - 272 117626424 - APECO1_2314 - hypothetical protein 4095 48.47 0 4711850..4712635 - 261 117626425 - APECO1_2313 - hypothetical protein 4096 50.07 0 4712678..4713358 - 226 117626426 yfjR APECO1_2312 - putative transcriptional regulator 4097 53.33 0 4713561..4714445 - 294 117626427 - APECO1_2311 - putative GTPase 4098 33.50 -2 4714546..4715769 + 407 117626428 - APECO1_2310 - hypothetical protein 4099 50.55 0 4717222..4717953 + 243 117626429 - APECO1_2309 - hypothetical protein 4100 53.07 0 4718111..4718875 + 254 117626430 - APECO1_2308 - hypothetical protein 4101 51.49 0 4719452..4719787 - 111 117626432 - APECO1_2306 - transposase InsC for insertion element IS2A/D/F/H/I/K 4102 46.57 0 4719926..4720990 + 354 117626433 - APECO1_2305 - putative cation/multidrug efflux pump protein 4103 42.47 -1 4721090..4721461 + 123 117626434 - APECO1_2304 - putative transcriptional repressor 4104 52.49 0 4722436..4723077 - 213 117626435 - APECO1_2303 - hypothetical protein 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.