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Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 357 53.91 0 425844..426878 + 344 117622656 yajF APECO1_1615 - fructokinase 358 50.37 0 427147..428367 - 406 117622657 araJ APECO1_1614 - protein AraJ 359 53.69 0 428457..431600 - 1047 117622658 sbcC APECO1_1613 - exonuclease subunit SbcC 360 53.06 0 431597..432823 - 408 117622659 sbcD APECO1_1612 - exonuclease subunit SbcD 361 53.91 0 432989..433678 + 229 117622660 phoB APECO1_1611 - transcriptional regulator PhoB 362 53.16 0 433736..435031 + 431 117622661 phoR APECO1_1610 - phosphate regulon sensor protein 363 55.53 0 435438..436757 + 439 117622662 brnQ APECO1_1609 - branched-chain amino-acid transport system II carrier protein 364 52.47 0 436833..438206 + 457 117622663 proY APECO1_1608 - putative proline-specific permease 365 54.57 0 438362..440179 + 605 117622664 malZ APECO1_1607 - maltodextrin glucosidase 366 52.43 0 440184..440822 - 212 117622665 yajB APECO1_1606 - acyl carrier protein phosphodiesterase 367 53.41 0 440984..442054 + 356 117622666 queA APECO1_1605 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 368 51.33 0 442109..443236 + 375 117622667 tgt APECO1_1604 - queuine tRNA-ribosyltransferase 369 49.55 0 443259..443591 + 110 117622668 yajC APECO1_1603 - preprotein translocase subunit YajC 370 53.19 0 443619..445466 + 615 117622669 secD APECO1_1602 - preprotein translocase subunit SecD 371 51.92 0 445432..446448 + 338 117622670 secF APECO1_1601 - preprotein translocase subunit SecF 372 46.04 -1 446509..446925 + 138 117622671 yajD APECO1_1600 - hypothetical protein 373 50.85 0 446963..447847 - 294 117622672 tsx APECO1_1599 - nucleoside-specific channel-forming protein Tsx 374 47.33 0 448145..448744 - 199 117622673 yajI APECO1_1598 - hypothetical protein 375 51.11 0 448835..449284 + 149 117622674 nrdR APECO1_1597 - transcriptional regulator NrdR 376 54.71 0 449288..450391 + 367 117622675 ribD APECO1_1596 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 377 52.38 0 450384..450950 + 188 117622676 ribH APECO1_1595 - riboflavin synthase subunit beta 378 55.01 0 451467..452444 + 325 117622678 thiL APECO1_1593 - thiamine monophosphate kinase 379 52.22 0 452422..452940 + 172 117622679 pgpA APECO1_1592 - phosphatidylglycerophosphatase A 380 53.64 0 452994..453968 - 324 117622680 yajO APECO1_1591 - oxidoreductase, NAD(P)-binding 381 54.05 0 454023..455885 - 620 117622681 dxs APECO1_1590 - 1-deoxy-D-xylulose-5-phosphate synthase 382 53.78 0 455910..456809 - 299 117622682 ispA APECO1_1589 - geranyltranstransferase 383 52.24 0 457257..458705 + 482 117622683 thiI APECO1_1588 - thiamine biosynthesis protein ThiI 384 56.62 +1 458759..459355 - 198 117622684 thiJ APECO1_1587 - hypothetical protein 385 51.86 0 459312..460223 - 303 117622685 apbA APECO1_1586 - 2-dehydropantoate 2-reductase 386 48.43 0 460373..460882 + 169 117622686 yajQ APECO1_1585 - nucleotide-binding protein 387 52.66 0 461010..462380 - 456 117622687 yajR APECO1_1584 - hypothetical protein 388 53.31 0 462523..463458 - 311 117622688 cyoE APECO1_1583 - protoheme IX farnesyltransferase 389 49.39 0 463425..463835 - 136 117622689 cyoD APECO1_1582 - cytochrome o ubiquinol oxidase subunit IV 390 53.33 0 463754..464368 - 204 117622690 cyoC APECO1_1581 - cytochrome o ubiquinol oxidase subunit III 391 53.06 0 464358..466349 - 663 117622691 cyoB APECO1_1580 - cytochrome o ubiquinol oxidase subunit I 392 50.68 0 466371..467327 - 318 117622692 cyoA APECO1_1579 - cytochrome o ubiquinol oxidase subunit II 393 53.66 0 467786..469261 - 491 117622693 ampG APECO1_1578 - muropeptide transporter 394 50.37 0 469305..469985 - 226 117622694 yajG APECO1_1577 - hypothetical protein 395 48.43 0 470188..470505 + 105 162317585 bolA APECO1_1576 - transcriptional regulator BolA 396 51.32 0 470849..472138 + 429 117622696 tig APECO1_1575 - trigger factor 397 50.16 0 472393..473016 + 207 117622697 clpP APECO1_1574 - ATP-dependent Clp protease proteolytic subunit 398 51.92 0 473142..474416 + 424 117622698 clpX APECO1_1573 - ATP-dependent protease ATP-binding subunit 399 52.38 0 474559..476958 + 799 117622699 lon APECO1_1572 - DNA-binding ATP-dependent protease La 400 49.08 0 477167..477439 + 90 117622700 hupB APECO1_1571 - transcriptional regulator HU subunit beta 401 52.14 0 477631..479502 + 623 117622701 ppiD APECO1_1570 - peptidyl-prolyl cis-trans isomerase (rotamase D) 402 54.03 0 479653..480024 + 123 117622702 ybaV APECO1_1569 - hypothetical protein 403 46.12 -1 480130..480528 + 132 117622703 ybaW APECO1_1568 - hypothetical protein 404 51.58 0 480580..481275 - 231 117622704 - APECO1_1567 - queuosine biosynthesis protein QueC 405 52.85 0 481340..483040 - 566 117622705 ybaE APECO1_1566 - hypothetical protein 406 50.54 0 483128..483958 + 276 117622706 cof APECO1_1565 - hypothetical protein 407 48.53 0 483958..484569 + 203 117622707 ybaO APECO1_1564 - putative transcriptional regulator YbaO 408 53.07 0 484599..486371 + 590 117622708 mdlA APECO1_1563 - putative multidrug transporter membrane\ATP-binding components 409 56.01 +1 486250..488145 + 631 117622709 mdlB APECO1_1562 - putative multidrug transporter membrane\ATP-binding components 410 48.85 0 488188..488664 + 158 117622710 glnK APECO1_1561 - glutamine synthetase activity regulation protein 411 55.94 +1 488694..489980 + 428 117622711 amtB APECO1_1560 - ammonium transporter 412 52.15 0 490029..490889 - 286 117622712 tesB APECO1_1559 - acyl-CoA thioesterase II 413 54.45 0 491107..491679 + 190 117622713 ybaY APECO1_1558 - lipoprotein 414 54.62 0 491710..492099 - 129 117622714 ybaZ APECO1_1557 - hypothetical protein 415 48.59 0 492400..492753 + 117 117622715 - APECO1_1556 - hypothetical protein 416 47.98 0 492795..494351 - 518 117622716 ylaB APECO1_1555 - hypothetical protein 417 46.67 0 494509..495018 - 169 117622717 ylaC APECO1_1554 - hypothetical protein 418 47.64 0 495095..495646 - 183 117622718 maa APECO1_15532 - maltose O-acetyltransferase 419 39.29 -2 495820..496239 - 139 117622719 hha APECO1_1553 - Hha protein 420 53.43 0 496983..500132 - 1049 117622720 acrB APECO1_1552 - acridine efflux pump 421 53.69 0 500155..501348 - 397 117622721 acrA APECO1_1551 - acriflavine resistance protein A precursor 422 45.68 -1 501490..502137 + 215 117622722 acrR APECO1_1550 - DNA-binding transcriptional repressor AcrR 423 51.86 0 502265..505627 + 1120 117622723 kefA APECO1_1549 - potassium efflux protein KefA 424 58.71 +1 506014..506541 - 175 117622724 priC APECO1_1548 - primosomal replication protein N'' 425 51.32 0 506611..506988 + 125 117622725 ybaN APECO1_1547 - hypothetical protein 426 53.50 0 507108..507692 + 194 117622726 apt APECO1_1546 - adenine phosphoribosyltransferase 427 57.30 +1 507821..509752 + 643 117622727 dnaX APECO1_1545 - DNA polymerase III subunits gamma and tau 428 52.42 0 509805..510134 + 109 117622728 - APECO1_1544 - hypothetical protein 429 56.93 +1 510134..510739 + 201 117622729 recR APECO1_1543 - recombination protein RecR 430 52.80 0 510849..512723 + 624 117622730 htpG APECO1_1542 - heat shock protein 90 431 51.42 0 512847..513548 + 233 117622731 adk APECO1_1541 - adenylate kinase 432 53.37 0 513680..514642 + 320 117622732 hemH APECO1_1540 - ferrochelatase 433 51.46 0 514639..515598 - 319 117622733 ybaC APECO1_1539 - acetyl esterase 434 52.41 0 515750..517054 + 434 117622734 gsk APECO1_1538 - inosine-guanosine kinase 435 55.46 0 517184..518860 - 558 117622735 ybaL APECO1_1537 - putative cation:proton antiport protein 436 52.17 0 519099..520319 - 406 117622736 fsr APECO1_1536 - fosmidomycin resistance protein 437 50.64 0 520537..522189 + 550 117622737 ushA APECO1_1535 - bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 438 39.88 -2 522227..522730 - 167 117622738 - APECO1_1534 - hypothetical protein 439 46.07 -1 522727..523527 - 266 117622739 - APECO1_1533 - hypothetical protein 440 50.00 0 523551..524030 - 159 117622740 ybaK APECO1_1532 - hypothetical protein 441 53.96 0 524234..525028 - 264 117622741 ybaP APECO1_1531 - putative ligase 442 41.91 -1 525161..525463 + 100 117622742 - APECO1_1530 - hypothetical protein 443 45.03 -1 525499..525840 + 113 117622743 ybaQ APECO1_1529 - DNA-binding transcriptional regulator 444 58.32 +1 525898..528402 - 834 117622744 ybaR APECO1_1528 - copper exporting ATPase 445 53.05 0 528664..529596 + 310 117622745 ybaS APECO1_1527 - glutaminase 446 53.75 0 529599..530891 + 430 117622746 ybaT APECO1_1526 - transporter 447 56.62 +1 531016..531423 + 135 117622747 ybbI APECO1_1525 - DNA-binding transcriptional regulator CueR 448 43.50 -1 531627..532049 - 140 117622748 - APECO1_1524 - hypothetical protein 449 48.48 0 532135..533151 - 338 117622749 - APECO1_1523 - adhesin/invasin-like protein 450 42.70 -1 533518..533880 + 120 117622750 - APECO1_1522 - hypothetical protein 451 57.52 +1 533983..534441 - 152 117622751 ybbJ APECO1_1521 - hypothetical protein 452 52.61 0 534438..535355 - 305 117622752 ybbK APECO1_1520 - putative protease YbbK 453 45.43 -1 535501..536178 + 225 117622753 ybbL APECO1_1519 - putative ABC transporter ATP-binding protein YbbL 454 46.22 0 536138..536944 + 268 117622754 ybbM APECO1_1518 - putative metal resistance protein 455 55.33 0 537007..537897 - 296 117622755 ybbN APECO1_1517 - thioredoxin domain-containing protein 456 53.70 0 537922..538731 - 269 117622756 ybbO APECO1_1516 - short chain dehydrogenase 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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