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Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3961 49.45 0 4554039..4555031 - 330 117626290 - APECO1_2447 - putative transcriptional regulator of sorbose uptake and utilization genes 3962 50.52 0 4555334..4556206 + 290 117626291 yjbC APECO1_2446 - 23S rRNA pseudouridine synthase F 3963 50.18 0 4556207..4556479 - 90 117626292 yjbD APECO1_2445 - hypothetical protein 3964 53.85 0 4556732..4558081 - 449 117626293 lysC APECO1_2444 - aspartate kinase III 3965 51.45 0 4558606..4560255 + 549 117626294 pgi APECO1_2443 - glucose-6-phosphate isomerase 3966 54.11 0 4561080..4561748 + 222 117626296 yjbF APECO1_2441 - hypothetical protein 3967 57.99 +1 4561745..4562482 + 245 117626297 yjbG APECO1_2440 - hypothetical protein 3968 54.60 0 4562482..4564578 + 698 117626298 yjbH APECO1_2439 - hypothetical protein 3969 48.39 0 4564625..4564903 - 92 117626299 - APECO1_2438 - hypothetical protein 3970 48.91 0 4565118..4565528 + 136 117626300 yjbE APECO1_2437 - phosphate-starvation-inducible protein PsiE 3971 54.99 0 4565622..4566512 - 296 117626301 malG APECO1_2436 - maltose transporter permease 3972 52.95 0 4566527..4568086 - 519 117626302 malF APECO1_2435 - maltose transporter membrane protein 3973 50.29 0 4568225..4569415 - 396 117626303 malE APECO1_2434 - maltose ABC transporter periplasmic protein 3974 54.48 0 4569690..4570895 + 401 117626304 malK APECO1_2433 - maltose/maltodextrin transporter ATP-binding protein 3975 51.90 0 4570967..4572307 + 446 117626305 lamB APECO1_2432 - maltoporin 3976 52.58 0 4572621..4573550 + 309 117626306 malM APECO1_2431 - maltose regulon periplasmic protein 3977 52.21 0 4573729..4574226 + 165 117626307 ubiC APECO1_2430 - chorismate pyruvate lyase 3978 51.43 0 4574239..4575111 + 290 117626308 ubiA APECO1_2429 - 4-hydroxybenzoate octaprenyltransferase 3979 54.99 0 4575264..4577747 - 827 117626309 plsB APECO1_2428 - glycerol-3-phosphate acyltransferase 3980 50.68 0 4577858..4578226 + 122 117626310 dgkA APECO1_2427 - diacylglycerol kinase DgkA 3981 51.89 0 4578336..4578944 + 202 117626311 lexA APECO1_2426 - LexA repressor 3982 54.93 0 4578963..4580342 + 459 117626312 dinF APECO1_2425 - DNA-damage-inducible SOS response protein 3983 49.64 0 4580709..4581395 - 228 117626313 yjbK APECO1_2424 - zinc uptake transcriptional repressor 3984 53.61 0 4581380..4582375 + 331 117626314 yjbN APECO1_2423 - tRNA-dihydrouridine synthase A 3985 48.34 0 4582299..4582751 + 150 117626315 pspG APECO1_2422 - phage shock protein G 3986 52.44 0 4582916..4583899 - 327 117626316 qor APECO1_2421 - quinone oxidoreductase, NADPH-dependent 3987 51.77 0 4584005..4586125 - 706 117626317 - APECO1_2420 - putative oxidoreductase 3988 50.96 0 4586043..4587443 - 466 117626318 - APECO1_2419 - putative transmembrane transport protein 3989 56.28 +1 4587534..4588313 - 259 117626319 - APECO1_2418 - putative enoyl-CoA hydratase/isomerase family protein 3990 52.54 0 4588306..4589877 - 523 117626320 - APECO1_2417 - putative propionate CoA-transferase 3991 50.24 0 4590133..4591167 + 344 117626321 - APECO1_2416 - LacI family transcriptional regulator 3992 52.90 0 4591240..4592655 + 471 117626322 dnaB APECO1_2415 - replicative DNA helicase 3993 55.74 +1 4592708..4593787 + 359 117626323 alr APECO1_2414 - alanine racemase 3994 50.72 0 4593810..4594367 + 185 117626324 - APECO1_2413 - putative transporter 3995 51.22 0 4594340..4595362 + 340 117626325 - APECO1_2412 - NadR transcriptional repressor / NMN adenylyltransferase 3996 53.10 0 4595444..4596637 + 397 117626326 tyrB APECO1_2411 - aromatic amino acid aminotransferase 3997 53.19 0 4596819..4599563 + 914 117626327 kgd APECO1_2410 - alpha-ketoglutarate decarboxylase 3998 53.59 0 4599596..4600750 + 384 117626328 - APECO1_2409 - dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex 3999 52.92 0 4600762..4602180 + 472 117626329 - APECO1_2408 - subunit of 2-oxoglutarate dehydrogenase 4000 51.62 0 4602202..4603371 + 389 117626330 sucC APECO1_2407 - SucC, succinyl-CoA synthetase beta chain 4001 51.43 0 4603384..4604256 + 290 117626331 - APECO1_2406 - succinyl-CoA synthetase alpha subunit 4002 51.20 0 4604462..4605967 + 501 117626332 - APECO1_2405 - putative membrane-bound protein 4003 52.15 0 4605841..4607052 + 403 117626333 - APECO1_2404 - putative lactate dehydrogenase 4004 44.37 -1 4607041..4608399 - 452 117626334 - APECO1_2403 - two component response regulator 4005 40.64 -2 4608392..4610212 - 606 117626335 - APECO1_2402 - putative transport sensor protein 4006 47.00 0 4610420..4611202 + 260 117626336 aphA APECO1_2401 - acid phosphatase/phosphotransferase 4007 51.80 0 4611313..4611729 + 138 117626337 yjbQ APECO1_2400 - hypothetical protein 4008 51.54 0 4611733..4612089 + 118 117626338 yjbR APECO1_2399 - hypothetical protein 4009 55.83 +1 4612124..4614946 - 940 117626339 uvrA APECO1_2398 - excinuclease ABC subunit A 4010 58.29 +1 4615200..4615736 + 178 162317560 ssb APECO1_2397 - single-strand DNA-binding protein 4011 53.28 0 4615835..4616185 - 116 117626341 yjcB APECO1_2396 - hypothetical protein 4012 44.74 -1 4616545..4618131 + 528 117626342 yjcC APECO1_2395 - signal transduction protein YjcC 4013 51.18 0 4618543..4619007 + 154 117626343 soxR APECO1_2394 - redox-sensitive transcriptional activator SoxR 4014 55.63 0 4619554..4620903 + 449 117626344 yjcD APECO1_2393 - putative xanthine/uracil permeases family protein YjcD 4015 55.45 0 4621054..4622703 + 549 117626345 yjcE APECO1_2392 - putative sodium/hydrogen exchanger family protein YjcE 4016 50.06 0 4622739..4623623 - 294 117626346 - APECO1_2391 - LysR family transcriptional regulator 4017 52.55 0 4623727..4624137 + 136 117626347 - APECO1_2390 - murein hydrolase exporter 4018 53.33 0 4624130..4624819 + 229 117626348 - APECO1_2389 - LrgB family murein hydrolase regulator 4019 54.97 0 4624858..4626507 - 549 117626349 actP APECO1_2388 - acetate permease 4020 50.31 0 4626504..4626821 - 105 117626350 yjcH APECO1_2387 - hypothetical protein 4021 57.07 +1 4627110..4629068 - 652 117626351 acs APECO1_2386 - acetyl-CoA synthetase 4022 52.61 0 4629460..4630896 + 478 117626352 nrfA APECO1_2385 - cytochrome c nitrite reductase 4023 54.28 0 4630935..4631507 + 190 117626353 nrfB APECO1_2384 - cytochrome c-type protein NrfB 4024 58.18 +1 4631504..4632175 + 223 117626354 nrfC APECO1_2383 - formate-dependent nitire reductase subunit NrfC 4025 57.68 +1 4632172..4633128 + 318 117626355 nrfD APECO1_2382 - formate-dependent nitrite reductase, membrane subunit NrfD 4026 56.96 +1 4633208..4634866 + 552 117626356 nrfE APECO1_2381 - heme lyase subunit NrfE 4027 52.79 0 4635173..4635835 + 220 117626357 nrfG APECO1_2380 - formate-dependent nitrite reductase complex subunit NrfG 4028 53.73 0 4636178..4637491 + 437 117626358 gltP APECO1_2379 - glutamate/aspartate:proton symporter 4029 48.99 0 4637639..4638328 - 229 117626359 yjcO APECO1_2378 - hypothetical protein 4030 49.22 0 4638439..4639143 - 234 117626360 yddO APECO1_2377 - putative ABC transporter ATP-binding protein YddO 4031 53.10 0 4639130..4639999 - 289 117626361 yddP APECO1_2376 - putative ABC transporter transporter, ATP-binding protein 4032 55.88 +1 4639959..4640792 - 277 117626362 yddQ APECO1_2375 - putative ABC transporter permease protein YddQ 4033 54.42 0 4640792..4641934 - 380 117626363 yddR APECO1_2374 - putative ABC transporter permease protein YddR 4034 49.20 0 4641941..4643509 - 522 117626364 - APECO1_2373 - putative ABC transporter, periplasmic oligo-dipeptide/nickel binding protein 4035 53.93 0 4643884..4645563 - 559 117626365 fdhF APECO1_23722 - formate dehydrogenase-H, selenopolypeptide subunit 4036 54.76 0 4645612..4646031 - 139 117626366 fdhF APECO1_2372 - formate dehydrogenase-H, selenopolypeptide subunit 4037 55.96 +1 4646229..4647695 - 488 117626367 yjcP APECO1_2371 - putative outer membrane efflux protein MdtP 4038 54.53 0 4647692..4649743 - 683 117626368 yjcQ APECO1_2370 - multidrug efflux system protein MdtO 4039 56.10 +1 4649743..4650774 - 343 117626369 yjcR APECO1_2369 - multidrug resistance protein MdtN 4040 46.74 0 4650793..4651068 - 91 117626370 - APECO1_2368 - hypothetical protein 4041 52.45 0 4651276..4653273 - 665 117626371 yjcS APECO1_2367 - hypothetical protein 4042 53.66 0 4653536..4654465 - 309 117626372 yjcT APECO1_2366 - D-allose kinase 4043 47.99 0 4654449..4655144 - 231 117626373 yjcU APECO1_2365 - allulose-6-phosphate 3-epimerase 4044 53.67 0 4655155..4655862 - 235 117626374 alsC APECO1_2364 - D-allose transport system permease protein AlsC 4045 48.01 0 4656114..4657646 - 510 117626375 alsA APECO1_2363 - D-allose transporter ATP-binding protein 4046 48.30 0 4657773..4658714 - 313 117626376 - APECO1_2362 - D-allose transporter subunit 4047 47.94 0 4658767..4659690 - 307 117626377 rpiR APECO1_2361 - DNA-binding transcriptional repressor RpiR 4048 50.22 0 4660016..4660465 + 149 117626378 rpiB APECO1_2360 - ribose-5-phosphate isomerase B 4049 55.15 0 4660534..4660863 + 109 117626379 - APECO1_2359 - hypothetical protein 4050 59.55 +1 4660891..4661649 - 252 117626380 phnP APECO1_2358 - carbon-phosphorus lyase complex accessory protein 4051 57.47 +1 4661651..4662085 - 144 117626381 phnO APECO1_2357 - aminoalkylphosphonic acid N-acetyltransferase 4052 58.42 +1 4662072..4662629 - 185 117626382 phnN APECO1_2356 - ribose 1,5-bisphosphokinase 4053 59.72 +1 4662629..4663765 - 378 117626383 phnM APECO1_2355 - PhnM, carbon-phosphorus lyase complex subunit 4054 59.23 +1 4663762..4664541 - 259 117626384 phnL APECO1_2354 - phosphonates transport ATP-binding protein PhnL 4055 59.82 +1 4664553..4665311 - 252 117626385 phnK APECO1_2353 - phosphonates transport ATP-binding protein 4056 59.08 +1 4665410..4666081 + 223 117626386 phnJ APECO1_2352 - PhnJ, carbon-phosphorus lyase complex subunit 4057 59.01 +1 4666146..4667216 - 356 117626387 phnI APECO1_2351 - PhnI, carbon-phosphorus lyase complex subunit 4058 60.34 +1 4667210..4667794 - 194 117626388 phnH APECO1_2350 - carbon-phosphorus lyase complex subunit 4059 62.25 +2 4667791..4668243 - 150 117626389 phnG APECO1_2349 - PhnG, carbon-phosphorus lyase complex subunit 4060 61.75 +2 4668244..4668975 - 243 117626390 phnF APECO1_2348 - putative transcriptional regulator 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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