version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3685 51.91 0 4215725..4216117 - 130 117626010 atpI APECO1_2724 - F0F1 ATP synthase subunit I 3686 49.04 0 4216722..4217345 - 207 117626011 gidB APECO1_2723 - glucose-inhibited division protein B 3687 54.34 0 4217409..4219298 - 629 117626012 gidA APECO1_2722 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 3688 49.55 0 4219677..4220120 - 147 117626013 mioC APECO1_2721 - flavodoxin 3689 49.24 0 4220210..4220668 - 152 117626014 asnC APECO1_2720 - DNA-binding transcriptional regulator AsnC 3690 56.80 +1 4220820..4221812 + 330 117626015 asnA APECO1_2719 - asparagine synthetase AsnA 3691 53.31 0 4221817..4223268 - 483 117626016 yieM APECO1_2718 - hypothetical protein 3692 49.97 0 4223262..4224758 - 498 117626017 yieN APECO1_2717 - regulatory ATPase RavA 3693 51.79 0 4224981..4226849 + 622 117626018 trkD APECO1_2716 - potassium transport protein Kup 3694 46.30 0 4227004..4227435 + 143 117626019 rbsD APECO1_2715 - D-ribose pyranase 3695 51.00 0 4227443..4228948 + 501 117626020 rbsA APECO1_2714 - D-ribose transporter ATP binding protein 3696 53.21 0 4228953..4229918 + 321 117626021 rbsC APECO1_2713 - ribose ABC transporter permease protein 3697 53.20 0 4229943..4230833 + 296 117626022 rbsB APECO1_2712 - D-ribose transporter subunit RbsB 3698 51.93 0 4230932..4231888 + 318 117626023 rbsK APECO1_2711 - ribokinase 3699 50.20 0 4231901..4232884 + 327 117626024 rbsR APECO1_2710 - transcriptional repressor RbsR 3700 49.44 0 4232850..4234277 - 475 117626025 yieO APECO1_2709 - putative transport protein YieO 3701 49.35 0 4234300..4234992 - 230 117626026 yieP APECO1_2708 - transcriptional regulator 3702 47.98 0 4240793..4241632 - 279 117626028 hdfR APECO1_2706 - transcriptional regulator HdfR 3703 48.38 0 4241751..4242089 + 112 117626029 - APECO1_2705 - hypothetical protein 3704 50.61 0 4242114..4243664 - 516 117626030 yifB APECO1_2704 - putative ATP-dependent protease 3705 54.04 0 4244225..4245871 + 548 117626031 ilvG APECO1_2703 - acetolactate synthase 2 catalytic subunit 3706 49.24 0 4245868..4246131 + 87 117626032 ilvM APECO1_2702 - acetolactate synthase 2 regulatory subunit 3707 54.09 0 4246151..4247080 + 309 117626033 ilvE APECO1_2701 - branched-chain amino acid aminotransferase 3708 56.24 +1 4247145..4248995 + 616 117626034 ilvD APECO1_2700 - dihydroxy-acid dehydratase 3709 58.59 +1 4248995..4250542 + 515 117626035 ilvA APECO1_2699 - threonine dehydratase 3710 56.31 +1 4250539..4251513 - 324 117626036 ilvY APECO1_2698 - DNA-binding transcriptional regulator IlvY 3711 53.39 0 4251579..4253054 + 491 117626037 ilvC APECO1_2697 - ketol-acid reductoisomerase 3712 51.06 0 4253100..4253381 - 93 117626038 ppiC APECO1_2696 - peptidyl-prolyl cis-trans isomerase C (rotamase C) 3713 54.40 0 4253468..4255489 + 673 117626039 rep APECO1_2695 - ATP-dependent DNA helicase Rep 3714 53.48 0 4255536..4257029 - 497 117626040 gppA APECO1_2694 - guanosine pentaphosphate phosphohydrolase 3715 52.13 0 4257156..4258421 - 421 117626041 rhlB APECO1_2693 - ATP-dependent RNA helicase RhlB 3716 51.40 0 4258546..4258938 - 130 117626042 - APECO1_2692 - hypothetical protein 3717 50.15 0 4259136..4260467 + 443 117626043 rho APECO1_2691 - transcription termination factor Rho 3718 49.28 0 4260707..4261810 + 367 117626044 rfe APECO1_2690 - UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase 3719 52.24 0 4261822..4262868 + 348 117626045 wzzE APECO1_2689 - lipopolysaccharide biosynthesis protein WzzE 3720 52.60 0 4262882..4264054 + 390 117626046 rffE APECO1_26882 - UDP-N-acetylglucosamine 2-epimerase 3721 53.60 0 4264051..4265313 + 420 117626047 wecC APECO1_2688 - UDP-N-acetyl-D-mannosamine dehydrogenase 3722 54.12 0 4265313..4266380 + 355 117626048 rffG APECO1_2687 - dTDP-glucose 4,6-dehydratase 3723 54.76 0 4266399..4267280 + 293 117626049 rffH APECO1_2686 - lipopolysaccharide biosynthesis protein RffH 3724 55.11 0 4267258..4267932 + 224 117626050 rffC APECO1_2685 - TDP-fucosamine acetyltransferase 3725 54.64 0 4267937..4269067 + 376 117626051 rffA APECO1_2684 - TDP-4-oxo-6-deoxy-D-glucose transaminase 3726 52.68 0 4269069..4270319 + 416 117626052 wzxE APECO1_2683 - O-antigen translocase 3727 52.50 0 4270316..4271395 + 359 117626053 rffT APECO1_2682 - 4-alpha-L-fucosyltransferase 3728 51.96 0 4271392..4272744 + 450 117626054 wecF APECO1_2681 - putative entero common antigen polymerase 3729 53.58 0 4272747..4273487 + 246 117626055 wecG APECO1_2680 - putative UDP-N-acetyl-D-mannosaminuronic acid transferase 3730 52.74 0 4273678..4275063 + 461 117626056 yifK APECO1_2679 - putative transport protein YifK 3731 51.29 0 4275749..4276984 + 411 117626057 aslB APECO1_2678 - putative regulator of arylsulfatase activity 3732 53.14 0 4277142..4278797 - 551 117626058 aslA APECO1_2677 - arylsulfatase-like enzyme 3733 55.05 0 4279476..4280672 - 398 117626059 hemY APECO1_2676 - putative protoheme IX biogenesis protein 3734 53.94 0 4280675..4281868 - 397 117626060 hemX APECO1_2675 - putative uroporphyrinogen III C-methyltransferase 3735 53.58 0 4281890..4282630 - 246 117626061 hemD APECO1_2674 - uroporphyrinogen-III synthase 3736 56.80 +1 4282627..4283589 - 320 117626062 hemC APECO1_2673 - porphobilinogen deaminase 3737 52.45 0 4284012..4286501 + 829 117626063 cyaA APECO1_2672 - adenylate cyclase 3738 51.40 0 4286541..4286861 - 106 117626064 cyaY APECO1_2671 - frataxin-like protein 3739 45.71 -1 4286909..4288225 - 438 117626065 - APECO1_2670 - hypothetical protein 3740 48.95 0 4288222..4288791 - 189 117626066 - APECO1_2669 - hypothetical protein 3741 50.71 0 4288876..4289721 - 281 117626067 - APECO1_2668 - hypothetical protein 3742 55.56 0 4290117..4290944 + 275 117626068 dapF APECO1_2667 - diaminopimelate epimerase 3743 55.93 +1 4290941..4291648 + 235 117626069 yigA APECO1_2666 - hypothetical protein 3744 54.29 0 4291645..4292541 + 298 117626070 xerC APECO1_2665 - site-specific tyrosine recombinase XerC 3745 56.35 +1 4292541..4293257 + 238 117626071 yigB APECO1_2664 - flavin mononucleotide phosphatase 3746 57.98 +1 4293341..4295503 + 720 117626072 uvrD APECO1_2663 - DNA-dependent helicase II 3747 48.06 0 4295548..4296450 - 300 117626073 - APECO1_2662 - hypothetical protein 3748 47.19 0 4296533..4297297 - 254 117626074 yigE APECO1_2661 - hypothetical protein 3749 53.10 0 4297667..4298617 + 316 117626075 corA APECO1_2660 - magnesium/nickel/cobalt transporter CorA 3750 33.53 -2 4298653..4299150 - 165 117626076 - APECO1_2659 - hypothetical protein 3751 32.86 -2 4299147..4299995 - 282 117626077 - APECO1_2658 - hypothetical protein 3752 50.62 0 4300306..4301196 - 296 117626078 rarD APECO1_2657 - putative chloramphenical resistance permease 3753 52.06 0 4301248..4301733 - 161 117626079 yigI APECO1_2656 - hypothetical protein 3754 52.07 0 4301880..4302749 + 289 117626080 pldA APECO1_2655 - phospholipase A 3755 54.25 0 4302868..4304703 + 611 117626081 recQ APECO1_2654 - ATP-dependent DNA helicase RecQ 3756 51.21 0 4304767..4305387 + 206 117626082 rhtC APECO1_2653 - threonine efflux system 3757 52.01 0 4305448..4306068 - 206 117626083 rhtB APECO1_2652 - homoserine/homoserine lactone efflux protein 3758 52.88 0 4306179..4307201 + 340 117626084 pldB APECO1_2651 - lysophospholipase L2 3759 50.44 0 4307092..4308009 + 305 117626085 - APECO1_2650 - putative sugar phosphatase 3760 55.11 0 4308085..4308984 + 299 117626086 yigM APECO1_2649 - putative inner membrane protein 3761 56.92 +1 4308872..4309825 - 317 117626087 metR APECO1_2648 - DNA-binding transcriptional activator, homocysteine-binding 3762 55.08 0 4309943..4312204 + 753 117626088 metE APECO1_2647 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3763 39.53 -2 4312693..4312950 - 85 117626089 - APECO1_2646 - hypothetical protein 3764 38.21 -2 4312947..4313438 - 163 117626090 - APECO1_2645 - hypothetical protein 3765 40.82 -2 4313787..4314080 - 97 117626091 - APECO1_2644 - hypothetical protein 3766 49.58 0 4314532..4315122 + 196 117626092 - APECO1_2643 - putative sugar isomerase 3767 49.37 0 4315164..4316672 + 502 117626093 - APECO1_2642 - PTS system, glucose-specific IIBC component 3768 54.90 0 4316723..4318720 + 665 117626094 - APECO1_2641 - transketolase 3769 40.90 -2 4318750..4319595 - 281 117626095 - APECO1_2640 - putative transcriptional regulatory protein 3770 46.14 -1 4319796..4320701 - 301 117626096 - APECO1_2639 - putative transcriptional regulatory protein 3771 51.72 0 4320779..4322002 - 407 117626097 - APECO1_2638 - putative permease for cytosine/purines, uracil, thiamine, allantoin 3772 50.77 0 4322028..4322417 - 129 117626098 - APECO1_2637 - hypothetical protein 3773 54.34 0 4322434..4323390 - 318 162317564 - APECO1_2636 - carbamate kinase 3774 53.93 0 4323383..4324858 - 491 117626100 yahG APECO1_2635 - hypothetical protein 3775 52.44 0 4324804..4326363 - 519 117626101 yahF APECO1_2634 - hypothetical protein 3776 50.06 0 4326458..4327318 - 286 117626102 yahE APECO1_2633 - hypothetical protein 3777 50.22 0 4327324..4327992 - 222 117626103 - APECO1_2632 - putative isochorismatase hydrolase 3778 52.74 0 4328249..4329124 - 291 117626104 - APECO1_2631 - putative dienelactone hydrolase 3779 54.12 0 4329320..4330084 + 254 117626105 udp APECO1_2630 - uridine phosphorylase 3780 51.24 0 4330119..4331609 - 496 117626106 - APECO1_2629 - hypothetical protein 3781 51.08 0 4331622..4332128 - 168 117626107 - APECO1_2628 - hypothetical protein 3782 52.72 0 4332145..4333119 - 324 117626108 - APECO1_2627 - hypothetical protein 3783 54.86 0 4333280..4333804 + 174 117626109 - APECO1_2626 - putative aldolase 3784 53.03 0 4333763..4334767 - 334 117626110 - APECO1_2625 - putative 2-keto-3-deoxygalactokinase 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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