version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3628 50.75 0 4151581..4151913 + 110 117625953 - APECO1_2780 - hypothetical protein 3629 56.09 +1 4152196..4153386 + 396 117625954 emrD APECO1_2779 - multidrug resistance protein D 3630 51.61 0 4153394..4153891 - 165 117625955 yidF APECO1_2778 - hypothetical protein 3631 50.69 0 4153888..4154250 - 120 117625956 yidG APECO1_2777 - hypothetical protein 3632 51.23 0 4154240..4154647 - 135 117625957 yidH APECO1_2776 - hypothetical protein 3633 51.41 0 4154647..4156140 - 497 117625958 yidJ APECO1_2775 - sulfatase/phosphatase YidJ 3634 53.38 0 4156137..4157852 - 571 117625959 yidK APECO1_2774 - putative symporter YidK 3635 43.37 -1 4157989..4158885 + 298 117625960 yidL APECO1_2773 - DNA-binding transcriptional regulator YidL 3636 52.49 0 4158975..4160660 - 561 117625961 yidE APECO1_2772 - hypothetical protein 3637 48.51 0 4160833..4161267 - 144 117625962 ibpB APECO1_2771 - heat shock chaperone IbpB 3638 47.10 0 4161373..4161786 - 137 117625963 ibpA APECO1_2770 - heat shock protein IbpA 3639 49.26 0 4162017..4162424 + 135 117625964 yidQ APECO1_2769 - hypothetical protein 3640 53.45 0 4162428..4163675 - 415 117625965 yidR APECO1_2768 - hypothetical protein 3641 51.87 0 4163722..4164843 + 373 117625966 yidS APECO1_2767 - putative oxidoreductase 3642 52.62 0 4164804..4166141 - 445 117625967 dgoT APECO1_2766 - D-galactonate transporter 3643 52.83 0 4166216..4167364 - 382 117625968 dgoD APECO1_2765 - bifunctional 2-oxo-3-deoxygalactonate 6-phosphate aldolase/galactonate dehydratase 3644 58.41 +1 4167361..4167978 - 205 117625969 dgoA APECO1_2764 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 3645 54.04 0 4167962..4168840 - 292 117625970 dgoK APECO1_2763 - 2-oxo-3-deoxygalactonate kinase DgoK 3646 54.93 0 4168837..4169526 - 229 117625971 dgoR APECO1_2762 - putative galactonate operon transcriptional repressor DgoR 3647 44.75 -1 4169805..4170461 + 218 117625972 - APECO1_2761 - hypothetical protein 3648 50.68 0 4170505..4171317 - 270 117625973 yidA APECO1_2760 - sugar phosphatase 3649 50.74 0 4171432..4171839 - 135 117625974 yidB APECO1_2759 - hypothetical protein 3650 54.74 0 4172070..4174484 - 804 117625975 gyrB APECO1_2758 - DNA gyrase subunit B 3651 54.84 0 4174513..4175586 - 357 117625976 recF APECO1_2757 - recombination protein F 3652 54.68 0 4175586..4176686 - 366 117625977 dnaN APECO1_2756 - DNA polymerase III subunit beta 3653 54.03 0 4176691..4178106 - 471 117625978 dnaA APECO1_2755 - chromosomal replication initiation protein 3654 55.83 +1 4178858..4179217 + 119 117625979 rnpA APECO1_27542 - ribonuclease P 3655 53.55 0 4179441..4181087 + 548 117625980 yidC APECO1_2754 - putative inner membrane protein translocase component YidC 3656 57.29 +1 4181193..4182557 + 454 117625981 trmE APECO1_2753 - tRNA modification GTPase TrmE 3657 50.45 0 4183079..4184509 + 476 117625982 tnaA APECO1_2752 - tryptophanase 3658 45.83 -1 4184601..4185848 + 415 117625983 tnaB APECO1_2751 - tryptophan permease TnaB 3659 53.40 0 4185980..4187155 + 391 117625984 mdtL APECO1_2750 - multidrug efflux system protein MdtL 3660 52.08 0 4187130..4188089 + 319 117625985 yidZ APECO1_2749 - DNA-binding transcriptional regulator YidZ 3661 52.10 0 4188234..4188995 + 253 117625986 yieE APECO1_2748 - hypothetical protein 3662 52.20 0 4189017..4189583 + 188 117625987 yieF APECO1_2747 - hypothetical protein 3663 53.96 0 4189636..4190973 - 445 117625988 yieG APECO1_2746 - putative membrane/transport protein 3664 50.45 0 4191140..4191805 + 221 117625989 yieH APECO1_2745 - 6-phosphogluconate phosphatase 3665 43.67 -1 4191872..4192345 + 157 117625990 yieI APECO1_2744 - putative inner membrane protein 3666 49.10 0 4192427..4193149 - 240 117625991 yieK APECO1_2743 - putative 6-phosphogluconolactonase 3667 49.37 0 4193164..4194360 - 398 117625992 yieL APECO1_2742 - putative xylanase 3668 44.84 -1 4194360..4195976 - 538 117625993 bglH APECO1_2741 - carbohydrate-specific outer membrane porin, cryptic 3669 47.89 0 4196062..4197456 - 464 117625994 bglB APECO1_2740 - 6-phospho-beta-glucosidase BglB 3670 50.08 0 4197475..4199349 - 624 117625995 bglF APECO1_2739 - beta-glucoside-specific PTS system components IIABC 3671 43.61 -1 4199483..4200319 - 278 117625996 bglG APECO1_2738 - transcriptional antiterminator BglG 3672 51.79 0 4200605..4201330 - 241 117625997 phoU APECO1_2737 - transcriptional regulator PhoU 3673 52.71 0 4201345..4202118 - 257 117625998 pstB APECO1_2736 - phosphate transporter subunit 3674 56.68 +1 4202209..4203099 - 296 117625999 pstA APECO1_2735 - phosphate transporter permease subunit 3675 55.00 0 4203099..4204058 - 319 117626000 pstC APECO1_2734 - phosphate transporter permease subunit 3676 52.07 0 4204145..4205185 - 346 117626001 pstS APECO1_2733 - phosphate transporter subunit 3677 53.22 0 4205504..4207333 - 609 117626002 glmS APECO1_2732 - D-fructose-6-phosphate amidotransferase 3678 52.95 0 4207494..4208864 - 456 117626003 glmU APECO1_2731 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3679 52.90 0 4209110..4209661 + 183 117626004 - APECO1_2730 - hypothetical protein 3680 54.66 0 4209658..4211040 - 460 117626005 atpD APECO1_2729 - F0F1 ATP synthase subunit beta 3681 53.47 0 4211067..4211930 - 287 117626006 atpG APECO1_2728 - F0F1 ATP synthase subunit gamma 3682 53.35 0 4212086..4213669 + 527 117626007 - APECO1_2727 - hypothetical protein 3683 53.27 0 4213775..4214446 + 223 117626008 - APECO1_2726 - hypothetical protein 3684 50.00 0 4214901..4215716 - 271 117626009 atpB APECO1_2725 - F0F1 ATP synthase subunit A 3685 51.91 0 4215725..4216117 - 130 117626010 atpI APECO1_2724 - F0F1 ATP synthase subunit I 3686 49.04 0 4216722..4217345 - 207 117626011 gidB APECO1_2723 - glucose-inhibited division protein B 3687 54.34 0 4217409..4219298 - 629 117626012 gidA APECO1_2722 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 3688 49.55 0 4219677..4220120 - 147 117626013 mioC APECO1_2721 - flavodoxin 3689 49.24 0 4220210..4220668 - 152 117626014 asnC APECO1_2720 - DNA-binding transcriptional regulator AsnC 3690 56.80 +1 4220820..4221812 + 330 117626015 asnA APECO1_2719 - asparagine synthetase AsnA 3691 53.31 0 4221817..4223268 - 483 117626016 yieM APECO1_2718 - hypothetical protein 3692 49.97 0 4223262..4224758 - 498 117626017 yieN APECO1_2717 - regulatory ATPase RavA 3693 51.79 0 4224981..4226849 + 622 117626018 trkD APECO1_2716 - potassium transport protein Kup 3694 46.30 0 4227004..4227435 + 143 117626019 rbsD APECO1_2715 - D-ribose pyranase 3695 51.00 0 4227443..4228948 + 501 117626020 rbsA APECO1_2714 - D-ribose transporter ATP binding protein 3696 53.21 0 4228953..4229918 + 321 117626021 rbsC APECO1_2713 - ribose ABC transporter permease protein 3697 53.20 0 4229943..4230833 + 296 117626022 rbsB APECO1_2712 - D-ribose transporter subunit RbsB 3698 51.93 0 4230932..4231888 + 318 117626023 rbsK APECO1_2711 - ribokinase 3699 50.20 0 4231901..4232884 + 327 117626024 rbsR APECO1_2710 - transcriptional repressor RbsR 3700 49.44 0 4232850..4234277 - 475 117626025 yieO APECO1_2709 - putative transport protein YieO 3701 49.35 0 4234300..4234992 - 230 117626026 yieP APECO1_2708 - transcriptional regulator 3702 47.98 0 4240793..4241632 - 279 117626028 hdfR APECO1_2706 - transcriptional regulator HdfR 3703 48.38 0 4241751..4242089 + 112 117626029 - APECO1_2705 - hypothetical protein 3704 50.61 0 4242114..4243664 - 516 117626030 yifB APECO1_2704 - putative ATP-dependent protease 3705 54.04 0 4244225..4245871 + 548 117626031 ilvG APECO1_2703 - acetolactate synthase 2 catalytic subunit 3706 49.24 0 4245868..4246131 + 87 117626032 ilvM APECO1_2702 - acetolactate synthase 2 regulatory subunit 3707 54.09 0 4246151..4247080 + 309 117626033 ilvE APECO1_2701 - branched-chain amino acid aminotransferase 3708 56.24 +1 4247145..4248995 + 616 117626034 ilvD APECO1_2700 - dihydroxy-acid dehydratase 3709 58.59 +1 4248995..4250542 + 515 117626035 ilvA APECO1_2699 - threonine dehydratase 3710 56.31 +1 4250539..4251513 - 324 117626036 ilvY APECO1_2698 - DNA-binding transcriptional regulator IlvY 3711 53.39 0 4251579..4253054 + 491 117626037 ilvC APECO1_2697 - ketol-acid reductoisomerase 3712 51.06 0 4253100..4253381 - 93 117626038 ppiC APECO1_2696 - peptidyl-prolyl cis-trans isomerase C (rotamase C) 3713 54.40 0 4253468..4255489 + 673 117626039 rep APECO1_2695 - ATP-dependent DNA helicase Rep 3714 53.48 0 4255536..4257029 - 497 117626040 gppA APECO1_2694 - guanosine pentaphosphate phosphohydrolase 3715 52.13 0 4257156..4258421 - 421 117626041 rhlB APECO1_2693 - ATP-dependent RNA helicase RhlB 3716 51.40 0 4258546..4258938 - 130 117626042 - APECO1_2692 - hypothetical protein 3717 50.15 0 4259136..4260467 + 443 117626043 rho APECO1_2691 - transcription termination factor Rho 3718 49.28 0 4260707..4261810 + 367 117626044 rfe APECO1_2690 - UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase 3719 52.24 0 4261822..4262868 + 348 117626045 wzzE APECO1_2689 - lipopolysaccharide biosynthesis protein WzzE 3720 52.60 0 4262882..4264054 + 390 117626046 rffE APECO1_26882 - UDP-N-acetylglucosamine 2-epimerase 3721 53.60 0 4264051..4265313 + 420 117626047 wecC APECO1_2688 - UDP-N-acetyl-D-mannosamine dehydrogenase 3722 54.12 0 4265313..4266380 + 355 117626048 rffG APECO1_2687 - dTDP-glucose 4,6-dehydratase 3723 54.76 0 4266399..4267280 + 293 117626049 rffH APECO1_2686 - lipopolysaccharide biosynthesis protein RffH 3724 55.11 0 4267258..4267932 + 224 117626050 rffC APECO1_2685 - TDP-fucosamine acetyltransferase 3725 54.64 0 4267937..4269067 + 376 117626051 rffA APECO1_2684 - TDP-4-oxo-6-deoxy-D-glucose transaminase 3726 52.68 0 4269069..4270319 + 416 117626052 wzxE APECO1_2683 - O-antigen translocase 3727 52.50 0 4270316..4271395 + 359 117626053 rffT APECO1_2682 - 4-alpha-L-fucosyltransferase 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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