version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3574 33.89 -2 4090318..4091571 - 417 117625899 waaL APECO1_2834 - lipid A-core, surface polymer ligase 3575 32.52 -2 4091617..4092600 - 327 117625900 waaV APECO1_2833 - beta-1,3-glucosyltransferase 3576 37.03 -2 4092682..4093710 - 342 117625901 rfaJ APECO1_2832 - UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase 3577 36.22 -2 4093736..4094428 - 230 117625902 - APECO1_2831 - lipopolysaccharide core biosynthesis protein 3578 35.24 -2 4094438..4095433 - 331 117625903 rfaJ APECO1_2830 - lipopolysaccharide 1,2-glucosyltransferase 3579 38.15 -2 4095450..4096466 - 338 117625904 rafI APECO1_2829 - lipopolysaccharide 1,3-galactosyltransferase 3580 47.09 0 4096482..4097288 - 268 117625905 rfaP APECO1_2828 - lipopolysaccharide core biosynthesis protein RfaP 3581 48.18 0 4097272..4098396 - 374 117625906 rfaG APECO1_2827 - lipopolysaccharide core biosynthesis glucosyltransferase I 3582 46.55 0 4098393..4099451 - 352 117625907 rfaQ APECO1_2826 - lipopolysaccharide core biosynthesis protein 3583 54.07 0 4099864..4101141 + 425 117625908 kdtA APECO1_2825 - 3-deoxy-D-manno-octulosonic-acid transferase 3584 54.69 0 4101667..4102476 - 269 117625909 mutM APECO1_2824 - formamidopyrimidine-DNA glycosylase 3585 48.59 0 4103215..4103889 - 224 117625910 radC APECO1_2823 - DNA repair protein RadC 3586 52.82 0 4103983..4105275 + 430 117625911 dfp APECO1_2822 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3587 54.47 0 4105253..4105711 + 152 117625912 dut APECO1_2821 - deoxyuridine 5'-triphosphate nucleotidohydrolase 3588 52.90 0 4105776..4106414 + 212 117625913 slmA APECO1_2820 - nucleoid occlusion protein 3589 52.66 0 4106451..4107107 - 218 117625914 pyrE APECO1_2819 - orotate phosphoribosyltransferase 3590 56.49 +1 4107158..4107874 - 238 117625915 rph APECO1_2818 - ribonuclease PH 3591 53.59 0 4108001..4108864 + 287 117625916 yicC APECO1_2817 - hypothetical protein 3592 47.91 0 4109074..4109910 + 278 117625917 dinD APECO1_2816 - DNA-damage-inducible protein D 3593 52.53 0 4110148..4110819 + 223 117625918 - APECO1_2815 - hypothetical protein 3594 52.81 0 4110816..4112504 - 562 117625919 ligB APECO1_2814 - NAD-dependent DNA ligase LigB 3595 47.72 0 4112699..4113379 + 226 117625920 gmk APECO1_2813 - guanylate kinase 3596 53.26 0 4113434..4113709 + 91 117625921 rpoZ APECO1_2812 - DNA-directed RNA polymerase subunit omega 3597 54.03 0 4113875..4115836 + 653 117625922 spoT APECO1_2811 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3598 55.65 0 4115843..4116532 + 229 117625923 spoU APECO1_2810 - tRNA guanosine-2'-O-methyltransferase 3599 56.88 +1 4116505..4118619 + 704 117625924 recG APECO1_2809 - ATP-dependent DNA helicase RecG 3600 54.06 0 4118653..4119858 - 401 117625925 - APECO1_2808 - glutamate transport protein 3601 54.81 0 4120138..4121529 + 463 117625926 yicE APECO1_2807 - putative purine permease YicE 3602 53.81 0 4121626..4123359 + 577 117625927 yicH APECO1_2806 - hypothetical protein 3603 50.69 0 4123403..4124122 - 239 117625928 - APECO1_2805 - hypothetical protein 3604 53.11 0 4124064..4125029 - 321 117625929 yajF APECO1_2804 - hypothetical protein 3605 52.50 0 4125044..4125904 - 286 117625930 - APECO1_2803 - hypothetical protein 3606 56.34 +1 4125985..4126836 - 283 117625931 - APECO1_2802 - putative aldolase 3607 52.29 0 4126848..4127939 - 363 117625932 - APECO1_2801 - putative PTS enzyme-II fructose 3608 41.59 -1 4127964..4128278 - 104 117625933 - APECO1_2800 - PTS system, fructose-like-2 IIB component 1 3609 43.95 -1 4128296..4128766 - 156 117625934 - APECO1_2799 - putative phosphotransferase system (PTS), fructose-specific 3610 41.31 -2 4128793..4130346 - 517 117625935 - APECO1_2798 - putative transcriptional antiterminator 3611 51.36 0 4130641..4132959 - 772 117625936 yicI APECO1_2797 - alpha-xylosidase YicI 3612 49.38 0 4132969..4134408 - 479 117625937 yicJ APECO1_2796 - putative transporter 3613 50.99 0 4134662..4135828 + 388 117625938 - APECO1_2795 - hypothetical protein 3614 33.60 -2 4136398..4136766 + 122 117625939 - APECO1_2794 - hypothetical protein 3615 48.36 0 4137009..4137986 + 325 117625940 yicL APECO1_2793 - putative inner membrane protein 3616 47.01 0 4137990..4138808 - 272 117625941 nlpA APECO1_2792 - cytoplasmic membrane lipoprotein-28 3617 43.53 -1 4138961..4139323 + 120 117625942 yicS APECO1_2791 - hypothetical protein 3618 53.23 0 4139364..4140554 - 396 162317565 nepI APECO1_2790 - ribonucleoside transporter 3619 52.71 0 4140765..4141244 - 159 117625944 yicN APECO1_2789 - hypothetical protein 3620 47.28 0 4141270..4142682 - 470 117625945 yicO APECO1_2788 - xanthine/uracil permase YicO 3621 54.39 0 4142779..4144545 + 588 117625946 ade APECO1_2787 - cryptic adenine deaminase 3622 52.87 0 4144592..4145983 - 463 117625947 uhpT APECO1_2786 - sugar phosphate antiporter 3623 54.88 0 4146121..4147443 - 440 117625948 uhpC APECO1_2785 - regulatory protein UhpC 3624 56.42 +1 4147450..4148952 - 500 117625949 uhpB APECO1_2784 - sensory histidine kinase UhpB 3625 58.71 +1 4148952..4149542 - 196 117625950 uhpA APECO1_2783 - DNA-binding transcriptional activator UhpA 3626 48.45 0 4149615..4149905 - 96 117625951 ilvN APECO1_2782 - acetolactate synthase 1 regulatory subunit 3627 56.13 +1 4149909..4151597 - 562 117625952 ilvB APECO1_2781 - acetolactate synthase catalytic subunit 3628 50.75 0 4151581..4151913 + 110 117625953 - APECO1_2780 - hypothetical protein 3629 56.09 +1 4152196..4153386 + 396 117625954 emrD APECO1_2779 - multidrug resistance protein D 3630 51.61 0 4153394..4153891 - 165 117625955 yidF APECO1_2778 - hypothetical protein 3631 50.69 0 4153888..4154250 - 120 117625956 yidG APECO1_2777 - hypothetical protein 3632 51.23 0 4154240..4154647 - 135 117625957 yidH APECO1_2776 - hypothetical protein 3633 51.41 0 4154647..4156140 - 497 117625958 yidJ APECO1_2775 - sulfatase/phosphatase YidJ 3634 53.38 0 4156137..4157852 - 571 117625959 yidK APECO1_2774 - putative symporter YidK 3635 43.37 -1 4157989..4158885 + 298 117625960 yidL APECO1_2773 - DNA-binding transcriptional regulator YidL 3636 52.49 0 4158975..4160660 - 561 117625961 yidE APECO1_2772 - hypothetical protein 3637 48.51 0 4160833..4161267 - 144 117625962 ibpB APECO1_2771 - heat shock chaperone IbpB 3638 47.10 0 4161373..4161786 - 137 117625963 ibpA APECO1_2770 - heat shock protein IbpA 3639 49.26 0 4162017..4162424 + 135 117625964 yidQ APECO1_2769 - hypothetical protein 3640 53.45 0 4162428..4163675 - 415 117625965 yidR APECO1_2768 - hypothetical protein 3641 51.87 0 4163722..4164843 + 373 117625966 yidS APECO1_2767 - putative oxidoreductase 3642 52.62 0 4164804..4166141 - 445 117625967 dgoT APECO1_2766 - D-galactonate transporter 3643 52.83 0 4166216..4167364 - 382 117625968 dgoD APECO1_2765 - bifunctional 2-oxo-3-deoxygalactonate 6-phosphate aldolase/galactonate dehydratase 3644 58.41 +1 4167361..4167978 - 205 117625969 dgoA APECO1_2764 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 3645 54.04 0 4167962..4168840 - 292 117625970 dgoK APECO1_2763 - 2-oxo-3-deoxygalactonate kinase DgoK 3646 54.93 0 4168837..4169526 - 229 117625971 dgoR APECO1_2762 - putative galactonate operon transcriptional repressor DgoR 3647 44.75 -1 4169805..4170461 + 218 117625972 - APECO1_2761 - hypothetical protein 3648 50.68 0 4170505..4171317 - 270 117625973 yidA APECO1_2760 - sugar phosphatase 3649 50.74 0 4171432..4171839 - 135 117625974 yidB APECO1_2759 - hypothetical protein 3650 54.74 0 4172070..4174484 - 804 117625975 gyrB APECO1_2758 - DNA gyrase subunit B 3651 54.84 0 4174513..4175586 - 357 117625976 recF APECO1_2757 - recombination protein F 3652 54.68 0 4175586..4176686 - 366 117625977 dnaN APECO1_2756 - DNA polymerase III subunit beta 3653 54.03 0 4176691..4178106 - 471 117625978 dnaA APECO1_2755 - chromosomal replication initiation protein 3654 55.83 +1 4178858..4179217 + 119 117625979 rnpA APECO1_27542 - ribonuclease P 3655 53.55 0 4179441..4181087 + 548 117625980 yidC APECO1_2754 - putative inner membrane protein translocase component YidC 3656 57.29 +1 4181193..4182557 + 454 117625981 trmE APECO1_2753 - tRNA modification GTPase TrmE 3657 50.45 0 4183079..4184509 + 476 117625982 tnaA APECO1_2752 - tryptophanase 3658 45.83 -1 4184601..4185848 + 415 117625983 tnaB APECO1_2751 - tryptophan permease TnaB 3659 53.40 0 4185980..4187155 + 391 117625984 mdtL APECO1_2750 - multidrug efflux system protein MdtL 3660 52.08 0 4187130..4188089 + 319 117625985 yidZ APECO1_2749 - DNA-binding transcriptional regulator YidZ 3661 52.10 0 4188234..4188995 + 253 117625986 yieE APECO1_2748 - hypothetical protein 3662 52.20 0 4189017..4189583 + 188 117625987 yieF APECO1_2747 - hypothetical protein 3663 53.96 0 4189636..4190973 - 445 117625988 yieG APECO1_2746 - putative membrane/transport protein 3664 50.45 0 4191140..4191805 + 221 117625989 yieH APECO1_2745 - 6-phosphogluconate phosphatase 3665 43.67 -1 4191872..4192345 + 157 117625990 yieI APECO1_2744 - putative inner membrane protein 3666 49.10 0 4192427..4193149 - 240 117625991 yieK APECO1_2743 - putative 6-phosphogluconolactonase 3667 49.37 0 4193164..4194360 - 398 117625992 yieL APECO1_2742 - putative xylanase 3668 44.84 -1 4194360..4195976 - 538 117625993 bglH APECO1_2741 - carbohydrate-specific outer membrane porin, cryptic 3669 47.89 0 4196062..4197456 - 464 117625994 bglB APECO1_2740 - 6-phospho-beta-glucosidase BglB 3670 50.08 0 4197475..4199349 - 624 117625995 bglF APECO1_2739 - beta-glucoside-specific PTS system components IIABC 3671 43.61 -1 4199483..4200319 - 278 117625996 bglG APECO1_2738 - transcriptional antiterminator BglG 3672 51.79 0 4200605..4201330 - 241 117625997 phoU APECO1_2737 - transcriptional regulator PhoU 3673 52.71 0 4201345..4202118 - 257 117625998 pstB APECO1_2736 - phosphate transporter subunit 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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