version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 312 49.26 0 377215..377886 - 223 117622611 yahN APECO1_1660 - putative cytochrome subunit of dehydrogenase 313 38.77 -2 378033..378308 + 91 117622612 yahO APECO1_1659 - hypothetical protein 314 55.64 0 378409..379995 - 528 117622613 prpR APECO1_1658 - DNA-binding transcriptional activator 315 56.00 +1 380234..381124 + 296 117622614 prpB APECO1_1657 - 2-methylisocitrate lyase 316 55.47 0 381169..382338 + 389 117622615 prpC APECO1_1656 - methylcitrate synthase 317 56.68 +1 382372..383823 + 483 117622616 prpD APECO1_1655 - 2-methylcitrate dehydratase 318 57.34 +1 383863..385749 + 628 117622617 prpE APECO1_1654 - propionyl-CoA synthetase 319 54.21 0 386074..387333 + 419 117622618 codB APECO1_1653 - cytosine permease 320 53.35 0 387308..388606 + 432 117622619 codA APECO1_1652 - cytosine deaminase 321 43.44 -1 388727..389389 - 220 117622620 lacA APECO1_1651 - galactoside O-acetyltransferase 322 46.01 -1 389404..390657 - 417 117622621 lacY APECO1_1650 - galactoside permease 323 57.04 +1 390709..393783 - 1024 117622622 lacZ APECO1_1649 - beta-D-galactosidase 324 56.14 +1 393907..394998 - 363 117622623 lacI APECO1_1648 - lac repressor 325 48.15 0 395191..395730 + 179 117622624 yaiL APECO1_1647 - nucleoprotein/polynucleotide-associated enzyme 326 48.32 0 395956..396789 - 277 117622625 yaiM APECO1_1646 - hypothetical protein 327 53.42 0 396882..397991 - 369 117622626 adhC APECO1_1645 - alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent 328 53.20 0 398026..398322 - 98 117622627 frmR APECO1_1644 - regulator protein FrmR 329 49.48 0 398490..399263 - 257 117622628 yaiO APECO1_1643 - hypothetical protein 330 45.99 -1 399265..399975 - 236 117622629 - APECO1_1642 - putative transferase 331 50.04 0 399824..401020 - 398 117622630 yaiP APECO1_1641 - putative glucosyltransferase 332 42.65 -1 401030..401716 - 228 117622631 - APECO1_1640 - hypothetical protein 333 54.90 0 402247..403266 + 339 117622632 tauA APECO1_1639 - taurine transporter substrate binding subunit 334 55.08 0 403279..404046 + 255 117622633 tauB APECO1_1638 - taurine transporter ATP-binding subunit 335 58.94 +1 404043..404870 + 275 117622634 tauC APECO1_1637 - taurine transporter subunit 336 54.58 0 404867..405718 + 283 117622635 tauD APECO1_1636 - taurine dioxygenase 337 53.97 0 405758..406765 - 335 117622636 hemB APECO1_1635 - delta-aminolevulinic acid dehydratase 338 45.92 -1 407258..410245 + 995 117622637 - APECO1_1634 - putative structural protein 339 40.21 -2 410286..410954 + 222 117622638 yaiV APECO1_1633 - putative DNA-binding transcriptional regulator 340 55.26 0 410955..412085 - 376 117622639 ampH APECO1_1632 - beta-lactamase/D-alanine carboxypeptidase 341 51.02 0 412458..413684 + 408 117622640 sbmA APECO1_1631 - transport protein 342 53.88 0 413697..414791 + 364 117622641 yaiW APECO1_1630 - hypothetical protein 343 51.46 0 414850..415158 - 102 117622642 - APECO1_1629 - hypothetical protein 344 44.35 -1 415286..415630 + 114 117622643 yaiZ APECO1_1628 - hypothetical protein 345 51.14 0 415654..416748 - 364 117622644 ddl APECO1_1627 - D-alanyl-alanine synthetase A 346 46.74 0 417211..417471 + 86 117622645 yaiB APECO1_1626 - hypothetical protein 347 53.04 0 417572..418987 + 471 117622646 phoA APECO1_1625 - alkaline phosphatase 348 47.49 0 419088..419426 + 112 117622647 psiF APECO1_1624 - hypothetical protein 349 53.76 0 419528..420643 + 371 117622648 - APECO1_1623 - diguanylate cyclase AdrA 350 54.69 0 420660..421469 - 269 117622649 proC APECO1_1622 - pyrroline-5-carboxylate reductase 351 55.34 0 421589..422047 + 152 117622650 - APECO1_1621 - hypothetical protein 352 52.19 0 422230..422754 + 174 117622651 aroL APECO1_1620 - shikimate kinase II 353 47.53 0 422744..423067 - 107 117622652 - APECO1_1619 - hypothetical protein 354 46.61 0 423253..423930 + 225 117622653 aroM APECO1_1618 - hypothetical protein 355 51.58 0 424002..424286 + 94 117622654 - APECO1_1617 - hypothetical protein 356 52.45 0 424933..425790 - 285 117622655 rdgC APECO1_1616 - recombination associated protein 357 53.91 0 425844..426878 + 344 117622656 yajF APECO1_1615 - fructokinase 358 50.37 0 427147..428367 - 406 117622657 araJ APECO1_1614 - protein AraJ 359 53.69 0 428457..431600 - 1047 117622658 sbcC APECO1_1613 - exonuclease subunit SbcC 360 53.06 0 431597..432823 - 408 117622659 sbcD APECO1_1612 - exonuclease subunit SbcD 361 53.91 0 432989..433678 + 229 117622660 phoB APECO1_1611 - transcriptional regulator PhoB 362 53.16 0 433736..435031 + 431 117622661 phoR APECO1_1610 - phosphate regulon sensor protein 363 55.53 0 435438..436757 + 439 117622662 brnQ APECO1_1609 - branched-chain amino-acid transport system II carrier protein 364 52.47 0 436833..438206 + 457 117622663 proY APECO1_1608 - putative proline-specific permease 365 54.57 0 438362..440179 + 605 117622664 malZ APECO1_1607 - maltodextrin glucosidase 366 52.43 0 440184..440822 - 212 117622665 yajB APECO1_1606 - acyl carrier protein phosphodiesterase 367 53.41 0 440984..442054 + 356 117622666 queA APECO1_1605 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 368 51.33 0 442109..443236 + 375 117622667 tgt APECO1_1604 - queuine tRNA-ribosyltransferase 369 49.55 0 443259..443591 + 110 117622668 yajC APECO1_1603 - preprotein translocase subunit YajC 370 53.19 0 443619..445466 + 615 117622669 secD APECO1_1602 - preprotein translocase subunit SecD 371 51.92 0 445432..446448 + 338 117622670 secF APECO1_1601 - preprotein translocase subunit SecF 372 46.04 -1 446509..446925 + 138 117622671 yajD APECO1_1600 - hypothetical protein 373 50.85 0 446963..447847 - 294 117622672 tsx APECO1_1599 - nucleoside-specific channel-forming protein Tsx 374 47.33 0 448145..448744 - 199 117622673 yajI APECO1_1598 - hypothetical protein 375 51.11 0 448835..449284 + 149 117622674 nrdR APECO1_1597 - transcriptional regulator NrdR 376 54.71 0 449288..450391 + 367 117622675 ribD APECO1_1596 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 377 52.38 0 450384..450950 + 188 117622676 ribH APECO1_1595 - riboflavin synthase subunit beta 378 55.01 0 451467..452444 + 325 117622678 thiL APECO1_1593 - thiamine monophosphate kinase 379 52.22 0 452422..452940 + 172 117622679 pgpA APECO1_1592 - phosphatidylglycerophosphatase A 380 53.64 0 452994..453968 - 324 117622680 yajO APECO1_1591 - oxidoreductase, NAD(P)-binding 381 54.05 0 454023..455885 - 620 117622681 dxs APECO1_1590 - 1-deoxy-D-xylulose-5-phosphate synthase 382 53.78 0 455910..456809 - 299 117622682 ispA APECO1_1589 - geranyltranstransferase 383 52.24 0 457257..458705 + 482 117622683 thiI APECO1_1588 - thiamine biosynthesis protein ThiI 384 56.62 +1 458759..459355 - 198 117622684 thiJ APECO1_1587 - hypothetical protein 385 51.86 0 459312..460223 - 303 117622685 apbA APECO1_1586 - 2-dehydropantoate 2-reductase 386 48.43 0 460373..460882 + 169 117622686 yajQ APECO1_1585 - nucleotide-binding protein 387 52.66 0 461010..462380 - 456 117622687 yajR APECO1_1584 - hypothetical protein 388 53.31 0 462523..463458 - 311 117622688 cyoE APECO1_1583 - protoheme IX farnesyltransferase 389 49.39 0 463425..463835 - 136 117622689 cyoD APECO1_1582 - cytochrome o ubiquinol oxidase subunit IV 390 53.33 0 463754..464368 - 204 117622690 cyoC APECO1_1581 - cytochrome o ubiquinol oxidase subunit III 391 53.06 0 464358..466349 - 663 117622691 cyoB APECO1_1580 - cytochrome o ubiquinol oxidase subunit I 392 50.68 0 466371..467327 - 318 117622692 cyoA APECO1_1579 - cytochrome o ubiquinol oxidase subunit II 393 53.66 0 467786..469261 - 491 117622693 ampG APECO1_1578 - muropeptide transporter 394 50.37 0 469305..469985 - 226 117622694 yajG APECO1_1577 - hypothetical protein 395 48.43 0 470188..470505 + 105 162317585 bolA APECO1_1576 - transcriptional regulator BolA 396 51.32 0 470849..472138 + 429 117622696 tig APECO1_1575 - trigger factor 397 50.16 0 472393..473016 + 207 117622697 clpP APECO1_1574 - ATP-dependent Clp protease proteolytic subunit 398 51.92 0 473142..474416 + 424 117622698 clpX APECO1_1573 - ATP-dependent protease ATP-binding subunit 399 52.38 0 474559..476958 + 799 117622699 lon APECO1_1572 - DNA-binding ATP-dependent protease La 400 49.08 0 477167..477439 + 90 117622700 hupB APECO1_1571 - transcriptional regulator HU subunit beta 401 52.14 0 477631..479502 + 623 117622701 ppiD APECO1_1570 - peptidyl-prolyl cis-trans isomerase (rotamase D) 402 54.03 0 479653..480024 + 123 117622702 ybaV APECO1_1569 - hypothetical protein 403 46.12 -1 480130..480528 + 132 117622703 ybaW APECO1_1568 - hypothetical protein 404 51.58 0 480580..481275 - 231 117622704 - APECO1_1567 - queuosine biosynthesis protein QueC 405 52.85 0 481340..483040 - 566 117622705 ybaE APECO1_1566 - hypothetical protein 406 50.54 0 483128..483958 + 276 117622706 cof APECO1_1565 - hypothetical protein 407 48.53 0 483958..484569 + 203 117622707 ybaO APECO1_1564 - putative transcriptional regulator YbaO 408 53.07 0 484599..486371 + 590 117622708 mdlA APECO1_1563 - putative multidrug transporter membrane\ATP-binding components 409 56.01 +1 486250..488145 + 631 117622709 mdlB APECO1_1562 - putative multidrug transporter membrane\ATP-binding components 410 48.85 0 488188..488664 + 158 117622710 glnK APECO1_1561 - glutamine synthetase activity regulation protein 411 55.94 +1 488694..489980 + 428 117622711 amtB APECO1_1560 - ammonium transporter 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0