version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3520 41.32 -2 4025570..4026007 - 145 117625845 yiaA APECO1_2887 - hypothetical protein 3521 41.53 -1 4026053..4026406 - 117 117625846 yiaB APECO1_2886 - hypothetical protein 3522 54.02 0 4026563..4028017 - 484 117625847 xylB APECO1_2885 - xylulokinase 3523 50.34 0 4028089..4029411 - 440 162317566 xylA APECO1_2884 - xylose isomerase 3524 43.30 -1 4029777..4030769 + 330 117625849 xylF APECO1_2883 - D-xylose transporter subunit XylF 3525 46.96 0 4030811..4032388 + 525 117625850 xylG APECO1_2882 - xylose transporter ATP-binding subunit 3526 53.89 0 4032366..4033547 + 393 117625851 xylH APECO1_28812 - DNA-binding transcriptional activator, xylose-binding 3527 48.69 0 4033625..4034803 + 392 117625852 xylR APECO1_2881 - DNA-binding transcriptional activator, xylose-binding 3528 47.52 0 4034911..4035735 - 274 117625853 bax APECO1_2880 - hypothetical protein 3529 52.63 0 4036055..4038085 + 676 117625854 malS APECO1_2879 - periplasmic alpha-amylase precursor 3530 52.23 0 4038263..4039516 + 417 117625855 avtA APECO1_2878 - valine--pyruvate transaminase 3531 53.33 0 4039668..4040147 - 159 117625856 ysaA APECO1_2877 - putative electron transport protein YsaA 3532 51.83 0 4040243..4041091 - 282 117625857 yiaJ APECO1_2876 - DNA-binding transcriptional repressor 3533 52.45 0 4041292..4042290 + 332 117625858 yiaK APECO1_2875 - 2,3-diketo-L-gulonate reductase 3534 46.24 0 4042302..4042766 + 154 117625859 yiaL APECO1_2874 - hypothetical protein 3535 49.84 0 4042789..4043709 + 306 117625860 - APECO1_2873 - hypothetical protein 3536 51.26 0 4044095..4045567 + 490 117625861 - APECO1_2872 - DedA family, membrane protein 3537 51.06 0 4045585..4046571 + 328 117625862 yiaO APECO1_2871 - putative extracellular solute-binding protein YiaO 3538 56.85 +1 4046575..4048071 + 498 117625863 lyxK APECO1_2870 - L-xylulose kinase 3539 60.18 +1 4048068..4048730 + 220 117625864 sgbH APECO1_2869 - 3-keto-L-gulonate-6-phosphate decarboxylase 3540 54.36 0 4048690..4049583 + 297 117625865 sgbU APECO1_2868 - putative L-xylulose 5-phosphate 3-epimerase 3541 57.72 +1 4049580..4050317 - 245 117625866 - APECO1_2867 - hypothetical protein 3542 54.39 0 4050319..4051947 - 542 117625867 aldB APECO1_2866 - aldehyde dehydrogenase B (lactaldehyde dehydrogenase) 3543 50.54 0 4051965..4053260 - 431 117625868 - APECO1_2865 - hypothetical protein 3544 50.17 0 4053390..4054541 - 383 117625869 yiaY APECO1_2864 - putative alcohol dehydrogenase 3545 56.75 +1 4054732..4056576 - 614 117625870 selB APECO1_2863 - selenocysteinyl-tRNA-specific translation factor 3546 55.96 +1 4056573..4057964 - 463 117625871 selA APECO1_2862 - selenocysteine synthase 3547 52.55 0 4058062..4058670 - 202 117625872 yibF APECO1_2861 - putative glutathione S-transferase 3548 53.12 0 4058741..4059877 - 378 117625873 yibH APECO1_2860 - hypothetical protein 3549 52.34 0 4059880..4060242 - 120 117625874 yibI APECO1_2859 - hypothetical protein 3550 53.76 0 4060778..4062691 + 637 117625875 mtlA APECO1_2858 - fused mannitol-specific PTS enzymes: IIA components/IIB components/IIC components 3551 52.97 0 4062830..4064158 + 442 117625876 mtlD APECO1_2857 - mannitol-1-phosphate 5-dehydrogenase 3552 49.83 0 4064158..4064745 + 195 117625877 mtlR APECO1_2856 - mannitol repressor protein 3553 50.41 0 4065249..4065611 + 120 117625878 - APECO1_2855 - hypothetical protein 3554 40.44 -2 4066404..4066853 + 149 117625879 - APECO1_2854 - hypothetical protein 3555 51.62 0 4066897..4071648 + 1583 117625880 yadA APECO1_2853 - putative autotransporter/adhesin 3556 54.89 0 4072058..4073713 + 551 117625881 lldP APECO1_2852 - L-lactate permease 3557 53.67 0 4073713..4074489 + 258 117625882 lldR APECO1_2851 - DNA-binding transcriptional repressor LldR 3558 55.58 0 4074486..4075676 + 396 117625883 lldD APECO1_2850 - L-lactate dehydrogenase 3559 55.06 0 4075724..4076197 + 157 117625884 yibK APECO1_2849 - putative tRNA/rRNA methyltransferase YibK 3560 53.77 0 4076252..4077073 - 273 117625885 cysE APECO1_2848 - serine acetyltransferase 3561 57.06 +1 4077153..4078172 - 339 117625886 gpsA APECO1_2847 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3562 49.81 0 4078172..4078699 - 175 117625887 secB APECO1_2846 - preprotein translocase subunit SecB 3563 47.04 0 4078769..4079038 + 89 117625888 - APECO1_2845 - hypothetical protein 3564 49.77 0 4079095..4079526 - 143 117625889 yibN APECO1_2844 - rhodanese-related sulfurtransferase 3565 53.07 0 4079771..4081315 + 514 117625890 yibO APECO1_2843 - phosphoglyceromutase 3566 57.01 +1 4081325..4082608 + 427 117625891 envC APECO1_2842 - hypothetical protein 3567 51.92 0 4082738..4083571 + 277 117625892 yibQ APECO1_2841 - polysaccharide deacetylase 3568 45.22 -1 4083558..4084592 - 344 117625893 yibD APECO1_2840 - putative glycosyl transferase 3569 52.24 0 4084831..4085856 - 341 117625894 tdh APECO1_2839 - L-threonine 3-dehydrogenase 3570 54.30 0 4085866..4087062 - 398 117625895 kbl APECO1_2838 - 2-amino-3-ketobutyrate coenzyme A ligase 3571 50.38 0 4087276..4088208 + 310 117625896 rfaD APECO1_2837 - ADP-L-glycero-D-mannoheptose-6-epimerase 3572 53.68 0 4088218..4089264 + 348 117625897 rfaF APECO1_2836 - ADP-heptose:LPS heptosyltransferase II 3573 51.17 0 4089268..4090248 + 326 117625898 rfaC APECO1_2835 - ADP-heptose:LPS heptosyl transferase I 3574 33.89 -2 4090318..4091571 - 417 117625899 waaL APECO1_2834 - lipid A-core, surface polymer ligase 3575 32.52 -2 4091617..4092600 - 327 117625900 waaV APECO1_2833 - beta-1,3-glucosyltransferase 3576 37.03 -2 4092682..4093710 - 342 117625901 rfaJ APECO1_2832 - UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase 3577 36.22 -2 4093736..4094428 - 230 117625902 - APECO1_2831 - lipopolysaccharide core biosynthesis protein 3578 35.24 -2 4094438..4095433 - 331 117625903 rfaJ APECO1_2830 - lipopolysaccharide 1,2-glucosyltransferase 3579 38.15 -2 4095450..4096466 - 338 117625904 rafI APECO1_2829 - lipopolysaccharide 1,3-galactosyltransferase 3580 47.09 0 4096482..4097288 - 268 117625905 rfaP APECO1_2828 - lipopolysaccharide core biosynthesis protein RfaP 3581 48.18 0 4097272..4098396 - 374 117625906 rfaG APECO1_2827 - lipopolysaccharide core biosynthesis glucosyltransferase I 3582 46.55 0 4098393..4099451 - 352 117625907 rfaQ APECO1_2826 - lipopolysaccharide core biosynthesis protein 3583 54.07 0 4099864..4101141 + 425 117625908 kdtA APECO1_2825 - 3-deoxy-D-manno-octulosonic-acid transferase 3584 54.69 0 4101667..4102476 - 269 117625909 mutM APECO1_2824 - formamidopyrimidine-DNA glycosylase 3585 48.59 0 4103215..4103889 - 224 117625910 radC APECO1_2823 - DNA repair protein RadC 3586 52.82 0 4103983..4105275 + 430 117625911 dfp APECO1_2822 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3587 54.47 0 4105253..4105711 + 152 117625912 dut APECO1_2821 - deoxyuridine 5'-triphosphate nucleotidohydrolase 3588 52.90 0 4105776..4106414 + 212 117625913 slmA APECO1_2820 - nucleoid occlusion protein 3589 52.66 0 4106451..4107107 - 218 117625914 pyrE APECO1_2819 - orotate phosphoribosyltransferase 3590 56.49 +1 4107158..4107874 - 238 117625915 rph APECO1_2818 - ribonuclease PH 3591 53.59 0 4108001..4108864 + 287 117625916 yicC APECO1_2817 - hypothetical protein 3592 47.91 0 4109074..4109910 + 278 117625917 dinD APECO1_2816 - DNA-damage-inducible protein D 3593 52.53 0 4110148..4110819 + 223 117625918 - APECO1_2815 - hypothetical protein 3594 52.81 0 4110816..4112504 - 562 117625919 ligB APECO1_2814 - NAD-dependent DNA ligase LigB 3595 47.72 0 4112699..4113379 + 226 117625920 gmk APECO1_2813 - guanylate kinase 3596 53.26 0 4113434..4113709 + 91 117625921 rpoZ APECO1_2812 - DNA-directed RNA polymerase subunit omega 3597 54.03 0 4113875..4115836 + 653 117625922 spoT APECO1_2811 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3598 55.65 0 4115843..4116532 + 229 117625923 spoU APECO1_2810 - tRNA guanosine-2'-O-methyltransferase 3599 56.88 +1 4116505..4118619 + 704 117625924 recG APECO1_2809 - ATP-dependent DNA helicase RecG 3600 54.06 0 4118653..4119858 - 401 117625925 - APECO1_2808 - glutamate transport protein 3601 54.81 0 4120138..4121529 + 463 117625926 yicE APECO1_2807 - putative purine permease YicE 3602 53.81 0 4121626..4123359 + 577 117625927 yicH APECO1_2806 - hypothetical protein 3603 50.69 0 4123403..4124122 - 239 117625928 - APECO1_2805 - hypothetical protein 3604 53.11 0 4124064..4125029 - 321 117625929 yajF APECO1_2804 - hypothetical protein 3605 52.50 0 4125044..4125904 - 286 117625930 - APECO1_2803 - hypothetical protein 3606 56.34 +1 4125985..4126836 - 283 117625931 - APECO1_2802 - putative aldolase 3607 52.29 0 4126848..4127939 - 363 117625932 - APECO1_2801 - putative PTS enzyme-II fructose 3608 41.59 -1 4127964..4128278 - 104 117625933 - APECO1_2800 - PTS system, fructose-like-2 IIB component 1 3609 43.95 -1 4128296..4128766 - 156 117625934 - APECO1_2799 - putative phosphotransferase system (PTS), fructose-specific 3610 41.31 -2 4128793..4130346 - 517 117625935 - APECO1_2798 - putative transcriptional antiterminator 3611 51.36 0 4130641..4132959 - 772 117625936 yicI APECO1_2797 - alpha-xylosidase YicI 3612 49.38 0 4132969..4134408 - 479 117625937 yicJ APECO1_2796 - putative transporter 3613 50.99 0 4134662..4135828 + 388 117625938 - APECO1_2795 - hypothetical protein 3614 33.60 -2 4136398..4136766 + 122 117625939 - APECO1_2794 - hypothetical protein 3615 48.36 0 4137009..4137986 + 325 117625940 yicL APECO1_2793 - putative inner membrane protein 3616 47.01 0 4137990..4138808 - 272 117625941 nlpA APECO1_2792 - cytoplasmic membrane lipoprotein-28 3617 43.53 -1 4138961..4139323 + 120 117625942 yicS APECO1_2791 - hypothetical protein 3618 53.23 0 4139364..4140554 - 396 162317565 nepI APECO1_2790 - ribonucleoside transporter 3619 52.71 0 4140765..4141244 - 159 117625944 yicN APECO1_2789 - hypothetical protein 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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