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Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3487 51.52 0 3981574..3982860 - 428 117625811 dctA APECO1_2920 - C4-dicarboxylate transporter DctA 3488 52.25 0 3983043..3984998 - 651 117625812 yhjK APECO1_2919 - putative phosphodiesterase 3489 57.28 +1 3985113..3988586 - 1157 117625813 yhjL APECO1_2918 - cellulose synthase subunit BcsC 3490 54.92 0 3988568..3989674 - 368 117625814 bcsZ APECO1_2917 - endo-1,4-D-glucanase 3491 54.91 0 3989681..3992020 - 779 117625815 bcsB APECO1_2916 - cellulose synthase regulator protein 3492 55.01 0 3992031..3994697 - 888 117625816 bcsA APECO1_29152 - cellulose synthase catalytic subunit 3493 52.99 0 3994646..3995398 - 250 117625817 yhjQ APECO1_2915 - cell division protein 3494 48.92 0 3995871..3997442 + 523 117625818 yhjS APECO1_2914 - hypothetical protein 3495 51.96 0 3997627..3999306 + 559 117625819 yhjU APECO1_2913 - hypothetical protein 3496 55.00 0 3999571..3999870 + 99 117625820 - APECO1_2912 - hypothetical protein 3497 54.55 0 4000045..4000341 + 98 117625821 - APECO1_2911 - hypothetical protein 3498 53.62 0 4000357..4000632 - 91 117625822 - APECO1_2910 - hypothetical protein 3499 45.28 -1 4000940..4002211 + 423 117625823 yhjV APECO1_2909 - hypothetical protein 3500 55.92 +1 4002241..4003245 - 334 117625824 dppF APECO1_2908 - dipeptide transporter ATP-binding subunit 3501 55.89 +1 4003242..4004225 - 327 117625825 dppD APECO1_2907 - dipeptide transporter ATP-binding subunit 3502 58.47 +1 4004236..4005138 - 300 117625826 dppC APECO1_2906 - dipeptide transporter 3503 56.08 +1 4005148..4006167 - 339 117625827 dppB APECO1_2905 - dipeptide transporter permease DppB 3504 51.31 0 4006318..4007925 - 535 117625828 dppA APECO1_2904 - dipeptide transporter protein DppA 3505 49.53 0 4008834..4010525 - 563 117625830 yhjW APECO1_2902 - phosphoethanolamine transferase 3506 50.62 0 4010849..4012057 - 402 117625831 yhjX APECO1_2901 - putative transporter 3507 50.36 0 4012286..4012984 - 232 117625832 yhjY APECO1_2900 - hypothetical protein 3508 49.47 0 4013142..4013705 + 187 162317567 tag APECO1_2899 - 3-methyl-adenine DNA glycosylase I 3509 51.93 0 4013702..4014142 + 146 117625834 yiaC APECO1_2898 - hypothetical protein 3510 54.52 0 4014111..4016390 - 759 117625835 bisC APECO1_2897 - biotin sulfoxide reductase 3511 56.97 +1 4016597..4017256 + 219 117625836 yiaD APECO1_2896 - putative outer membrane lipoprotein 3512 51.67 0 4017348..4018334 + 328 117625837 tkrA APECO1_2895 - 2-ketoaldonate reductase/glyoxylate reductase B 3513 49.82 0 4018384..4019214 - 276 117625838 yiaF APECO1_2894 - hypothetical protein 3514 43.64 -1 4019528..4019818 + 96 117625839 yiaG APECO1_2893 - putative transcriptional regulator 3515 42.02 -1 4020036..4020461 - 141 117625840 - APECO1_2892 - hypothetical protein 3516 55.60 0 4020974..4023043 - 689 117625841 glyS APECO1_2891 - glycyl-tRNA synthetase subunit beta 3517 56.03 +1 4023053..4023964 - 303 117625842 glyQ APECO1_2890 - glycyl-tRNA synthetase subunit alpha 3518 48.00 0 4024059..4024358 - 99 117625843 ysaB APECO1_2889 - hypothetical protein 3519 45.78 -1 4024533..4025528 + 331 117625844 yiaH APECO1_2888 - hypothetical protein 3520 41.32 -2 4025570..4026007 - 145 117625845 yiaA APECO1_2887 - hypothetical protein 3521 41.53 -1 4026053..4026406 - 117 117625846 yiaB APECO1_2886 - hypothetical protein 3522 54.02 0 4026563..4028017 - 484 117625847 xylB APECO1_2885 - xylulokinase 3523 50.34 0 4028089..4029411 - 440 162317566 xylA APECO1_2884 - xylose isomerase 3524 43.30 -1 4029777..4030769 + 330 117625849 xylF APECO1_2883 - D-xylose transporter subunit XylF 3525 46.96 0 4030811..4032388 + 525 117625850 xylG APECO1_2882 - xylose transporter ATP-binding subunit 3526 53.89 0 4032366..4033547 + 393 117625851 xylH APECO1_28812 - DNA-binding transcriptional activator, xylose-binding 3527 48.69 0 4033625..4034803 + 392 117625852 xylR APECO1_2881 - DNA-binding transcriptional activator, xylose-binding 3528 47.52 0 4034911..4035735 - 274 117625853 bax APECO1_2880 - hypothetical protein 3529 52.63 0 4036055..4038085 + 676 117625854 malS APECO1_2879 - periplasmic alpha-amylase precursor 3530 52.23 0 4038263..4039516 + 417 117625855 avtA APECO1_2878 - valine--pyruvate transaminase 3531 53.33 0 4039668..4040147 - 159 117625856 ysaA APECO1_2877 - putative electron transport protein YsaA 3532 51.83 0 4040243..4041091 - 282 117625857 yiaJ APECO1_2876 - DNA-binding transcriptional repressor 3533 52.45 0 4041292..4042290 + 332 117625858 yiaK APECO1_2875 - 2,3-diketo-L-gulonate reductase 3534 46.24 0 4042302..4042766 + 154 117625859 yiaL APECO1_2874 - hypothetical protein 3535 49.84 0 4042789..4043709 + 306 117625860 - APECO1_2873 - hypothetical protein 3536 51.26 0 4044095..4045567 + 490 117625861 - APECO1_2872 - DedA family, membrane protein 3537 51.06 0 4045585..4046571 + 328 117625862 yiaO APECO1_2871 - putative extracellular solute-binding protein YiaO 3538 56.85 +1 4046575..4048071 + 498 117625863 lyxK APECO1_2870 - L-xylulose kinase 3539 60.18 +1 4048068..4048730 + 220 117625864 sgbH APECO1_2869 - 3-keto-L-gulonate-6-phosphate decarboxylase 3540 54.36 0 4048690..4049583 + 297 117625865 sgbU APECO1_2868 - putative L-xylulose 5-phosphate 3-epimerase 3541 57.72 +1 4049580..4050317 - 245 117625866 - APECO1_2867 - hypothetical protein 3542 54.39 0 4050319..4051947 - 542 117625867 aldB APECO1_2866 - aldehyde dehydrogenase B (lactaldehyde dehydrogenase) 3543 50.54 0 4051965..4053260 - 431 117625868 - APECO1_2865 - hypothetical protein 3544 50.17 0 4053390..4054541 - 383 117625869 yiaY APECO1_2864 - putative alcohol dehydrogenase 3545 56.75 +1 4054732..4056576 - 614 117625870 selB APECO1_2863 - selenocysteinyl-tRNA-specific translation factor 3546 55.96 +1 4056573..4057964 - 463 117625871 selA APECO1_2862 - selenocysteine synthase 3547 52.55 0 4058062..4058670 - 202 117625872 yibF APECO1_2861 - putative glutathione S-transferase 3548 53.12 0 4058741..4059877 - 378 117625873 yibH APECO1_2860 - hypothetical protein 3549 52.34 0 4059880..4060242 - 120 117625874 yibI APECO1_2859 - hypothetical protein 3550 53.76 0 4060778..4062691 + 637 117625875 mtlA APECO1_2858 - fused mannitol-specific PTS enzymes: IIA components/IIB components/IIC components 3551 52.97 0 4062830..4064158 + 442 117625876 mtlD APECO1_2857 - mannitol-1-phosphate 5-dehydrogenase 3552 49.83 0 4064158..4064745 + 195 117625877 mtlR APECO1_2856 - mannitol repressor protein 3553 50.41 0 4065249..4065611 + 120 117625878 - APECO1_2855 - hypothetical protein 3554 40.44 -2 4066404..4066853 + 149 117625879 - APECO1_2854 - hypothetical protein 3555 51.62 0 4066897..4071648 + 1583 117625880 yadA APECO1_2853 - putative autotransporter/adhesin 3556 54.89 0 4072058..4073713 + 551 117625881 lldP APECO1_2852 - L-lactate permease 3557 53.67 0 4073713..4074489 + 258 117625882 lldR APECO1_2851 - DNA-binding transcriptional repressor LldR 3558 55.58 0 4074486..4075676 + 396 117625883 lldD APECO1_2850 - L-lactate dehydrogenase 3559 55.06 0 4075724..4076197 + 157 117625884 yibK APECO1_2849 - putative tRNA/rRNA methyltransferase YibK 3560 53.77 0 4076252..4077073 - 273 117625885 cysE APECO1_2848 - serine acetyltransferase 3561 57.06 +1 4077153..4078172 - 339 117625886 gpsA APECO1_2847 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3562 49.81 0 4078172..4078699 - 175 117625887 secB APECO1_2846 - preprotein translocase subunit SecB 3563 47.04 0 4078769..4079038 + 89 117625888 - APECO1_2845 - hypothetical protein 3564 49.77 0 4079095..4079526 - 143 117625889 yibN APECO1_2844 - rhodanese-related sulfurtransferase 3565 53.07 0 4079771..4081315 + 514 117625890 yibO APECO1_2843 - phosphoglyceromutase 3566 57.01 +1 4081325..4082608 + 427 117625891 envC APECO1_2842 - hypothetical protein 3567 51.92 0 4082738..4083571 + 277 117625892 yibQ APECO1_2841 - polysaccharide deacetylase 3568 45.22 -1 4083558..4084592 - 344 117625893 yibD APECO1_2840 - putative glycosyl transferase 3569 52.24 0 4084831..4085856 - 341 117625894 tdh APECO1_2839 - L-threonine 3-dehydrogenase 3570 54.30 0 4085866..4087062 - 398 117625895 kbl APECO1_2838 - 2-amino-3-ketobutyrate coenzyme A ligase 3571 50.38 0 4087276..4088208 + 310 117625896 rfaD APECO1_2837 - ADP-L-glycero-D-mannoheptose-6-epimerase 3572 53.68 0 4088218..4089264 + 348 117625897 rfaF APECO1_2836 - ADP-heptose:LPS heptosyltransferase II 3573 51.17 0 4089268..4090248 + 326 117625898 rfaC APECO1_2835 - ADP-heptose:LPS heptosyl transferase I 3574 33.89 -2 4090318..4091571 - 417 117625899 waaL APECO1_2834 - lipid A-core, surface polymer ligase 3575 32.52 -2 4091617..4092600 - 327 117625900 waaV APECO1_2833 - beta-1,3-glucosyltransferase 3576 37.03 -2 4092682..4093710 - 342 117625901 rfaJ APECO1_2832 - UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase 3577 36.22 -2 4093736..4094428 - 230 117625902 - APECO1_2831 - lipopolysaccharide core biosynthesis protein 3578 35.24 -2 4094438..4095433 - 331 117625903 rfaJ APECO1_2830 - lipopolysaccharide 1,2-glucosyltransferase 3579 38.15 -2 4095450..4096466 - 338 117625904 rafI APECO1_2829 - lipopolysaccharide 1,3-galactosyltransferase 3580 47.09 0 4096482..4097288 - 268 117625905 rfaP APECO1_2828 - lipopolysaccharide core biosynthesis protein RfaP 3581 48.18 0 4097272..4098396 - 374 117625906 rfaG APECO1_2827 - lipopolysaccharide core biosynthesis glucosyltransferase I 3582 46.55 0 4098393..4099451 - 352 117625907 rfaQ APECO1_2826 - lipopolysaccharide core biosynthesis protein 3583 54.07 0 4099864..4101141 + 425 117625908 kdtA APECO1_2825 - 3-deoxy-D-manno-octulosonic-acid transferase 3584 54.69 0 4101667..4102476 - 269 117625909 mutM APECO1_2824 - formamidopyrimidine-DNA glycosylase 3585 48.59 0 4103215..4103889 - 224 117625910 radC APECO1_2823 - DNA repair protein RadC 3586 52.82 0 4103983..4105275 + 430 117625911 dfp APECO1_2822 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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