version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3460 52.57 0 3949568..3950482 + 304 117625784 chuT APECO1_2947 - putative periplasmic binding protein ChuT 3461 52.17 0 3950502..3951839 + 445 117625785 chuW APECO1_2946 - coproporphyrinogen III oxidase 3462 49.70 0 3951852..3952346 + 164 117625786 - APECO1_2945 - hypothetical protein 3463 56.25 +1 3952346..3952969 + 207 117625787 - APECO1_2944 - hypothetical protein 3464 52.87 0 3953054..3954010 + 318 117625788 chuU APECO1_2943 - putative permease of iron compound ABC transport system 3465 48.90 0 3954007..3954777 + 256 117625789 - APECO1_2942 - hemin importer ATP-binding subunit 3466 45.37 -1 3954829..3955476 - 215 117625790 yhiD APECO1_2941 - putative Mg(2+) transport ATPase 3467 40.41 -2 3955540..3955878 - 112 117625791 hdeB APECO1_2940 - acid-resistance protein 3468 42.64 -1 3955982..3956314 - 110 117625792 hdeA APECO1_2939 - acid-resistance protein 3469 46.42 0 3956569..3957141 + 190 117625793 hdeD APECO1_2938 - acid-resistance membrane protein 3470 34.40 -2 3957907..3958467 + 186 117625794 gadE APECO1_2937 - putative DNA-binding transcriptional activator 3471 46.60 0 3958511..3958804 + 97 117625795 - APECO1_2936 - hypothetical protein 3472 54.49 0 3958806..3959963 + 385 117625796 mdtE APECO1_2935 - multidrug resistance efflux protein MdtE 3473 53.05 0 3959988..3963101 + 1037 117625797 mdtF APECO1_2934 - putative multidrug transporter MdtF, RpoS-dependent 3474 41.02 -2 3963464..3964192 - 242 117625798 yhiW APECO1_2933 - DNA-binding transcriptional activator YhiW 3475 41.09 -2 3964560..3965384 - 274 117625799 gadX APECO1_2932 - DNA-binding transcriptional regulator GadX 3476 52.20 0 3965752..3967182 - 476 117625800 gadB APECO1_2931 - glutamate decarboxylase B, PLP-dependent 3477 48.28 0 3967363..3968760 - 465 117625801 yhjA APECO1_2930 - putative cytochrome C peroxidase 3478 54.36 0 3969165..3970814 + 549 117625802 treF APECO1_2929 - trehalase 3479 47.43 0 3970865..3971467 - 200 117625803 yhjB APECO1_2928 - putative DNA-binding response regulator in two-component regulatory system 3480 51.75 0 3971915..3972886 + 323 117625804 yhjC APECO1_2927 - putative DNA-binding transcriptional regulator YhjC 3481 52.76 0 3972935..3973948 + 337 117625805 yhjD APECO1_2926 - hypothetical protein 3482 55.40 0 3974341..3975663 + 440 117625806 yhjE APECO1_2925 - putative metabolite transport protein YhjE 3483 53.23 0 3975704..3977779 - 691 117625807 yhjG APECO1_2924 - putative outer membrane biogenesis protein YhjG 3484 52.47 0 3977834..3978601 - 255 117625808 yhjJ APECO1_2923 - EAL domain-containing protein 3485 54.31 0 3978614..3979762 + 382 117625809 kdgK APECO1_2922 - 2-dehydro-3-deoxygluconokinase 3486 53.84 0 3979858..3981354 - 498 117625810 yhjJ APECO1_2921 - putative zinc-dependent peptidase 3487 51.52 0 3981574..3982860 - 428 117625811 dctA APECO1_2920 - C4-dicarboxylate transporter DctA 3488 52.25 0 3983043..3984998 - 651 117625812 yhjK APECO1_2919 - putative phosphodiesterase 3489 57.28 +1 3985113..3988586 - 1157 117625813 yhjL APECO1_2918 - cellulose synthase subunit BcsC 3490 54.92 0 3988568..3989674 - 368 117625814 bcsZ APECO1_2917 - endo-1,4-D-glucanase 3491 54.91 0 3989681..3992020 - 779 117625815 bcsB APECO1_2916 - cellulose synthase regulator protein 3492 55.01 0 3992031..3994697 - 888 117625816 bcsA APECO1_29152 - cellulose synthase catalytic subunit 3493 52.99 0 3994646..3995398 - 250 117625817 yhjQ APECO1_2915 - cell division protein 3494 48.92 0 3995871..3997442 + 523 117625818 yhjS APECO1_2914 - hypothetical protein 3495 51.96 0 3997627..3999306 + 559 117625819 yhjU APECO1_2913 - hypothetical protein 3496 55.00 0 3999571..3999870 + 99 117625820 - APECO1_2912 - hypothetical protein 3497 54.55 0 4000045..4000341 + 98 117625821 - APECO1_2911 - hypothetical protein 3498 53.62 0 4000357..4000632 - 91 117625822 - APECO1_2910 - hypothetical protein 3499 45.28 -1 4000940..4002211 + 423 117625823 yhjV APECO1_2909 - hypothetical protein 3500 55.92 +1 4002241..4003245 - 334 117625824 dppF APECO1_2908 - dipeptide transporter ATP-binding subunit 3501 55.89 +1 4003242..4004225 - 327 117625825 dppD APECO1_2907 - dipeptide transporter ATP-binding subunit 3502 58.47 +1 4004236..4005138 - 300 117625826 dppC APECO1_2906 - dipeptide transporter 3503 56.08 +1 4005148..4006167 - 339 117625827 dppB APECO1_2905 - dipeptide transporter permease DppB 3504 51.31 0 4006318..4007925 - 535 117625828 dppA APECO1_2904 - dipeptide transporter protein DppA 3505 49.53 0 4008834..4010525 - 563 117625830 yhjW APECO1_2902 - phosphoethanolamine transferase 3506 50.62 0 4010849..4012057 - 402 117625831 yhjX APECO1_2901 - putative transporter 3507 50.36 0 4012286..4012984 - 232 117625832 yhjY APECO1_2900 - hypothetical protein 3508 49.47 0 4013142..4013705 + 187 162317567 tag APECO1_2899 - 3-methyl-adenine DNA glycosylase I 3509 51.93 0 4013702..4014142 + 146 117625834 yiaC APECO1_2898 - hypothetical protein 3510 54.52 0 4014111..4016390 - 759 117625835 bisC APECO1_2897 - biotin sulfoxide reductase 3511 56.97 +1 4016597..4017256 + 219 117625836 yiaD APECO1_2896 - putative outer membrane lipoprotein 3512 51.67 0 4017348..4018334 + 328 117625837 tkrA APECO1_2895 - 2-ketoaldonate reductase/glyoxylate reductase B 3513 49.82 0 4018384..4019214 - 276 117625838 yiaF APECO1_2894 - hypothetical protein 3514 43.64 -1 4019528..4019818 + 96 117625839 yiaG APECO1_2893 - putative transcriptional regulator 3515 42.02 -1 4020036..4020461 - 141 117625840 - APECO1_2892 - hypothetical protein 3516 55.60 0 4020974..4023043 - 689 117625841 glyS APECO1_2891 - glycyl-tRNA synthetase subunit beta 3517 56.03 +1 4023053..4023964 - 303 117625842 glyQ APECO1_2890 - glycyl-tRNA synthetase subunit alpha 3518 48.00 0 4024059..4024358 - 99 117625843 ysaB APECO1_2889 - hypothetical protein 3519 45.78 -1 4024533..4025528 + 331 117625844 yiaH APECO1_2888 - hypothetical protein 3520 41.32 -2 4025570..4026007 - 145 117625845 yiaA APECO1_2887 - hypothetical protein 3521 41.53 -1 4026053..4026406 - 117 117625846 yiaB APECO1_2886 - hypothetical protein 3522 54.02 0 4026563..4028017 - 484 117625847 xylB APECO1_2885 - xylulokinase 3523 50.34 0 4028089..4029411 - 440 162317566 xylA APECO1_2884 - xylose isomerase 3524 43.30 -1 4029777..4030769 + 330 117625849 xylF APECO1_2883 - D-xylose transporter subunit XylF 3525 46.96 0 4030811..4032388 + 525 117625850 xylG APECO1_2882 - xylose transporter ATP-binding subunit 3526 53.89 0 4032366..4033547 + 393 117625851 xylH APECO1_28812 - DNA-binding transcriptional activator, xylose-binding 3527 48.69 0 4033625..4034803 + 392 117625852 xylR APECO1_2881 - DNA-binding transcriptional activator, xylose-binding 3528 47.52 0 4034911..4035735 - 274 117625853 bax APECO1_2880 - hypothetical protein 3529 52.63 0 4036055..4038085 + 676 117625854 malS APECO1_2879 - periplasmic alpha-amylase precursor 3530 52.23 0 4038263..4039516 + 417 117625855 avtA APECO1_2878 - valine--pyruvate transaminase 3531 53.33 0 4039668..4040147 - 159 117625856 ysaA APECO1_2877 - putative electron transport protein YsaA 3532 51.83 0 4040243..4041091 - 282 117625857 yiaJ APECO1_2876 - DNA-binding transcriptional repressor 3533 52.45 0 4041292..4042290 + 332 117625858 yiaK APECO1_2875 - 2,3-diketo-L-gulonate reductase 3534 46.24 0 4042302..4042766 + 154 117625859 yiaL APECO1_2874 - hypothetical protein 3535 49.84 0 4042789..4043709 + 306 117625860 - APECO1_2873 - hypothetical protein 3536 51.26 0 4044095..4045567 + 490 117625861 - APECO1_2872 - DedA family, membrane protein 3537 51.06 0 4045585..4046571 + 328 117625862 yiaO APECO1_2871 - putative extracellular solute-binding protein YiaO 3538 56.85 +1 4046575..4048071 + 498 117625863 lyxK APECO1_2870 - L-xylulose kinase 3539 60.18 +1 4048068..4048730 + 220 117625864 sgbH APECO1_2869 - 3-keto-L-gulonate-6-phosphate decarboxylase 3540 54.36 0 4048690..4049583 + 297 117625865 sgbU APECO1_2868 - putative L-xylulose 5-phosphate 3-epimerase 3541 57.72 +1 4049580..4050317 - 245 117625866 - APECO1_2867 - hypothetical protein 3542 54.39 0 4050319..4051947 - 542 117625867 aldB APECO1_2866 - aldehyde dehydrogenase B (lactaldehyde dehydrogenase) 3543 50.54 0 4051965..4053260 - 431 117625868 - APECO1_2865 - hypothetical protein 3544 50.17 0 4053390..4054541 - 383 117625869 yiaY APECO1_2864 - putative alcohol dehydrogenase 3545 56.75 +1 4054732..4056576 - 614 117625870 selB APECO1_2863 - selenocysteinyl-tRNA-specific translation factor 3546 55.96 +1 4056573..4057964 - 463 117625871 selA APECO1_2862 - selenocysteine synthase 3547 52.55 0 4058062..4058670 - 202 117625872 yibF APECO1_2861 - putative glutathione S-transferase 3548 53.12 0 4058741..4059877 - 378 117625873 yibH APECO1_2860 - hypothetical protein 3549 52.34 0 4059880..4060242 - 120 117625874 yibI APECO1_2859 - hypothetical protein 3550 53.76 0 4060778..4062691 + 637 117625875 mtlA APECO1_2858 - fused mannitol-specific PTS enzymes: IIA components/IIB components/IIC components 3551 52.97 0 4062830..4064158 + 442 117625876 mtlD APECO1_2857 - mannitol-1-phosphate 5-dehydrogenase 3552 49.83 0 4064158..4064745 + 195 117625877 mtlR APECO1_2856 - mannitol repressor protein 3553 50.41 0 4065249..4065611 + 120 117625878 - APECO1_2855 - hypothetical protein 3554 40.44 -2 4066404..4066853 + 149 117625879 - APECO1_2854 - hypothetical protein 3555 51.62 0 4066897..4071648 + 1583 117625880 yadA APECO1_2853 - putative autotransporter/adhesin 3556 54.89 0 4072058..4073713 + 551 117625881 lldP APECO1_2852 - L-lactate permease 3557 53.67 0 4073713..4074489 + 258 117625882 lldR APECO1_2851 - DNA-binding transcriptional repressor LldR 3558 55.58 0 4074486..4075676 + 396 117625883 lldD APECO1_2850 - L-lactate dehydrogenase 3559 55.06 0 4075724..4076197 + 157 117625884 yibK APECO1_2849 - putative tRNA/rRNA methyltransferase YibK 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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