version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 274 42.53 -1 328227..329216 + 329 117622573 - APECO1_1698 - putative LysR-like transcriptional regulator 275 50.26 0 329341..330309 + 322 117622574 ycjZ APECO1_1697 - putative transcriptional regulator 276 50.61 0 330340..331329 - 329 117622575 - APECO1_1696 - putative aldo/keto reductase 277 50.70 0 331356..332207 - 283 117622576 - APECO1_1695 - 2,5-diketo-D-gluconic acid reductase A 278 51.92 0 332773..337023 + 1416 117622577 eaeH APECO1_1694 - attaching and effacing protein, pathogenesis factor EaeH 279 43.21 -1 337148..338038 - 296 117622578 ykgA APECO1_1693 - putative transcriptional regulator 280 43.16 -1 338238..339122 + 294 117622579 - APECO1_1692 - 2,5-diketo-D-gluconic acid reductase A 281 44.78 -1 339282..339884 - 200 117622580 ykgB APECO1_1691 - hypothetical protein 282 45.45 -1 340232..341584 - 450 117622581 ykgC APECO1_1690 - pyridine nucleotide-disulfide oxidoreductase 283 50.88 0 341784..342638 + 284 117622582 ykgD APECO1_1689 - putative DNA-binding transcriptional regulator 284 50.56 0 343165..343884 + 239 117622583 ykgE APECO1_1688 - hypothetical protein 285 50.31 0 344022..345323 + 433 117622584 ykgG APECO1_1687 - hypothetical protein 286 51.47 0 345163..346011 + 282 117622585 ykgG APECO1_1686 - hypothetical protein 287 37.07 -2 346254..346922 - 222 117622586 ykgH APECO1_1685 - hypothetical protein 288 46.26 0 347106..349418 - 770 117622587 - APECO1_1684 - hypothetical protein 289 47.64 0 349445..350206 - 253 117622588 - APECO1_1683 - hypothetical protein 290 48.93 0 350360..351154 - 264 117622589 - APECO1_1682 - hypothetical protein 291 42.45 -1 351484..352086 - 200 117622590 - APECO1_1681 - hypothetical protein 292 41.49 -2 352811..353092 + 93 117622591 - APECO1_1680 - hypothetical protein 293 58.26 +1 353117..354721 - 534 117622592 betA APECO1_1679 - choline dehydrogenase 294 57.52 +1 354819..356294 - 491 117622593 betB APECO1_1678 - betaine aldehyde dehydrogenase 295 56.28 +1 356305..356901 - 198 117622594 betI APECO1_1677 - transcriptional regulator BetI 296 55.01 0 357021..359054 + 677 117622595 betT APECO1_1676 - choline transport protein BetT 297 45.48 -1 359926..361020 + 364 117622596 yahA APECO1_1675 - putative DNA-binding transcriptional regulator 298 50.16 0 361062..361994 - 310 117622597 yahB APECO1_1674 - putative DNA-bindng transcriptional regulator 299 54.02 0 362086..362583 - 165 117622598 yahC APECO1_1673 - hypothetical protein 300 45.38 -1 362841..363446 + 201 117622599 yahD APECO1_1672 - putative transcription factor 301 47.34 0 363486..364349 + 287 117622600 yahE APECO1_1671 - hypothetical protein 302 54.84 0 364339..365886 + 515 117622601 yahF APECO1_1670 - acyl-CoA synthetase 303 58.28 +1 365886..367304 + 472 117622602 - APECO1_1669 - hypothetical protein 304 56.26 +1 367458..368408 + 316 117622603 yahI APECO1_1668 - putative carbamate kinase 305 56.11 +1 368418..369800 + 460 117622604 yahJ APECO1_1667 - deaminase 306 45.26 -1 370098..370508 + 136 117622605 - APECO1_1666 - hypothetical protein 307 47.82 0 370759..371745 + 328 117622606 - APECO1_1665 - putative periplasmic binding protein, substrate ribose 308 51.45 0 371794..373278 + 494 117622607 - APECO1_1664 - sugar ABC transporter ATP-binding protein 309 50.82 0 373271..374242 + 323 117622608 - APECO1_1663 - ribose ABC transporter permease 310 51.47 0 374209..375195 + 328 117622609 - APECO1_1662 - putative permease component of transport system 311 52.76 0 375282..376331 + 349 117622610 yahK APECO1_1661 - putative zinc-type alcohol dehydrogenase-like protein YahK 312 49.26 0 377215..377886 - 223 117622611 yahN APECO1_1660 - putative cytochrome subunit of dehydrogenase 313 38.77 -2 378033..378308 + 91 117622612 yahO APECO1_1659 - hypothetical protein 314 55.64 0 378409..379995 - 528 117622613 prpR APECO1_1658 - DNA-binding transcriptional activator 315 56.00 +1 380234..381124 + 296 117622614 prpB APECO1_1657 - 2-methylisocitrate lyase 316 55.47 0 381169..382338 + 389 117622615 prpC APECO1_1656 - methylcitrate synthase 317 56.68 +1 382372..383823 + 483 117622616 prpD APECO1_1655 - 2-methylcitrate dehydratase 318 57.34 +1 383863..385749 + 628 117622617 prpE APECO1_1654 - propionyl-CoA synthetase 319 54.21 0 386074..387333 + 419 117622618 codB APECO1_1653 - cytosine permease 320 53.35 0 387308..388606 + 432 117622619 codA APECO1_1652 - cytosine deaminase 321 43.44 -1 388727..389389 - 220 117622620 lacA APECO1_1651 - galactoside O-acetyltransferase 322 46.01 -1 389404..390657 - 417 117622621 lacY APECO1_1650 - galactoside permease 323 57.04 +1 390709..393783 - 1024 117622622 lacZ APECO1_1649 - beta-D-galactosidase 324 56.14 +1 393907..394998 - 363 117622623 lacI APECO1_1648 - lac repressor 325 48.15 0 395191..395730 + 179 117622624 yaiL APECO1_1647 - nucleoprotein/polynucleotide-associated enzyme 326 48.32 0 395956..396789 - 277 117622625 yaiM APECO1_1646 - hypothetical protein 327 53.42 0 396882..397991 - 369 117622626 adhC APECO1_1645 - alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent 328 53.20 0 398026..398322 - 98 117622627 frmR APECO1_1644 - regulator protein FrmR 329 49.48 0 398490..399263 - 257 117622628 yaiO APECO1_1643 - hypothetical protein 330 45.99 -1 399265..399975 - 236 117622629 - APECO1_1642 - putative transferase 331 50.04 0 399824..401020 - 398 117622630 yaiP APECO1_1641 - putative glucosyltransferase 332 42.65 -1 401030..401716 - 228 117622631 - APECO1_1640 - hypothetical protein 333 54.90 0 402247..403266 + 339 117622632 tauA APECO1_1639 - taurine transporter substrate binding subunit 334 55.08 0 403279..404046 + 255 117622633 tauB APECO1_1638 - taurine transporter ATP-binding subunit 335 58.94 +1 404043..404870 + 275 117622634 tauC APECO1_1637 - taurine transporter subunit 336 54.58 0 404867..405718 + 283 117622635 tauD APECO1_1636 - taurine dioxygenase 337 53.97 0 405758..406765 - 335 117622636 hemB APECO1_1635 - delta-aminolevulinic acid dehydratase 338 45.92 -1 407258..410245 + 995 117622637 - APECO1_1634 - putative structural protein 339 40.21 -2 410286..410954 + 222 117622638 yaiV APECO1_1633 - putative DNA-binding transcriptional regulator 340 55.26 0 410955..412085 - 376 117622639 ampH APECO1_1632 - beta-lactamase/D-alanine carboxypeptidase 341 51.02 0 412458..413684 + 408 117622640 sbmA APECO1_1631 - transport protein 342 53.88 0 413697..414791 + 364 117622641 yaiW APECO1_1630 - hypothetical protein 343 51.46 0 414850..415158 - 102 117622642 - APECO1_1629 - hypothetical protein 344 44.35 -1 415286..415630 + 114 117622643 yaiZ APECO1_1628 - hypothetical protein 345 51.14 0 415654..416748 - 364 117622644 ddl APECO1_1627 - D-alanyl-alanine synthetase A 346 46.74 0 417211..417471 + 86 117622645 yaiB APECO1_1626 - hypothetical protein 347 53.04 0 417572..418987 + 471 117622646 phoA APECO1_1625 - alkaline phosphatase 348 47.49 0 419088..419426 + 112 117622647 psiF APECO1_1624 - hypothetical protein 349 53.76 0 419528..420643 + 371 117622648 - APECO1_1623 - diguanylate cyclase AdrA 350 54.69 0 420660..421469 - 269 117622649 proC APECO1_1622 - pyrroline-5-carboxylate reductase 351 55.34 0 421589..422047 + 152 117622650 - APECO1_1621 - hypothetical protein 352 52.19 0 422230..422754 + 174 117622651 aroL APECO1_1620 - shikimate kinase II 353 47.53 0 422744..423067 - 107 117622652 - APECO1_1619 - hypothetical protein 354 46.61 0 423253..423930 + 225 117622653 aroM APECO1_1618 - hypothetical protein 355 51.58 0 424002..424286 + 94 117622654 - APECO1_1617 - hypothetical protein 356 52.45 0 424933..425790 - 285 117622655 rdgC APECO1_1616 - recombination associated protein 357 53.91 0 425844..426878 + 344 117622656 yajF APECO1_1615 - fructokinase 358 50.37 0 427147..428367 - 406 117622657 araJ APECO1_1614 - protein AraJ 359 53.69 0 428457..431600 - 1047 117622658 sbcC APECO1_1613 - exonuclease subunit SbcC 360 53.06 0 431597..432823 - 408 117622659 sbcD APECO1_1612 - exonuclease subunit SbcD 361 53.91 0 432989..433678 + 229 117622660 phoB APECO1_1611 - transcriptional regulator PhoB 362 53.16 0 433736..435031 + 431 117622661 phoR APECO1_1610 - phosphate regulon sensor protein 363 55.53 0 435438..436757 + 439 117622662 brnQ APECO1_1609 - branched-chain amino-acid transport system II carrier protein 364 52.47 0 436833..438206 + 457 117622663 proY APECO1_1608 - putative proline-specific permease 365 54.57 0 438362..440179 + 605 117622664 malZ APECO1_1607 - maltodextrin glucosidase 366 52.43 0 440184..440822 - 212 117622665 yajB APECO1_1606 - acyl carrier protein phosphodiesterase 367 53.41 0 440984..442054 + 356 117622666 queA APECO1_1605 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 368 51.33 0 442109..443236 + 375 117622667 tgt APECO1_1604 - queuine tRNA-ribosyltransferase 369 49.55 0 443259..443591 + 110 117622668 yajC APECO1_1603 - preprotein translocase subunit YajC 370 53.19 0 443619..445466 + 615 117622669 secD APECO1_1602 - preprotein translocase subunit SecD 371 51.92 0 445432..446448 + 338 117622670 secF APECO1_1601 - preprotein translocase subunit SecF 372 46.04 -1 446509..446925 + 138 117622671 yajD APECO1_1600 - hypothetical protein 373 50.85 0 446963..447847 - 294 117622672 tsx APECO1_1599 - nucleoside-specific channel-forming protein Tsx 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0