version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3156 52.86 0 3621693..3623126 + 477 117625476 dacB APECO1_3250 - D-alanyl-D-alanine carboxypeptidase/endopeptidase 3157 52.94 0 3623167..3624339 - 390 117625477 obgE APECO1_3249 - GTPase ObgE 3158 52.48 0 3624355..3625320 - 321 117625478 yhbE APECO1_32482 - hypothetical protein 3159 52.57 0 3626295..3627266 + 323 117625480 ispB APECO1_3247 - octaprenyl diphosphate synthase 3160 49.46 0 3627499..3627777 + 92 117625481 nlp APECO1_3246 - DNA-binding transcriptional regulator Nlp 3161 53.41 0 3627825..3629084 - 419 117625482 murA APECO1_3245 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3162 50.37 0 3629139..3629408 - 89 117625483 yrbA APECO1_3244 - putative DNA-binding transcriptional regulator 3163 52.20 0 3629846..3630481 - 211 117625484 yrbC APECO1_3243 - hypothetical protein 3164 49.28 0 3630500..3631051 - 183 117625485 yrbD APECO1_3242 - putative ABC-type organic solvent transporter 3165 55.04 0 3631056..3631838 - 260 117625486 yrbE APECO1_3241 - putative toluene transporter subunit: permease component 3166 54.57 0 3631846..3632655 - 269 117625487 yrbF APECO1_3240 - putative ABC transporter ATP-binding protein YrbF 3167 51.23 0 3632865..3633842 + 325 117625488 yrbG APECO1_3239 - putative calcium/sodium:proton antiporter 3168 52.08 0 3633856..3634842 + 328 117625489 kdsD APECO1_3238 - D-arabinose 5-phosphate isomerase 3169 52.73 0 3634863..3635429 + 188 117625490 yrbI APECO1_3237 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3170 46.53 0 3635426..3636001 + 191 117625491 - APECO1_3236 - hypothetical protein 3171 49.64 0 3635970..3636527 + 185 117625492 yhbN APECO1_3235 - hypothetical protein 3172 54.55 0 3636534..3637259 + 241 117625493 yhbG APECO1_3234 - putative ABC transporter ATP-binding protein YhbG 3173 52.44 0 3637307..3638740 + 477 117625494 rpoN APECO1_3233 - RNA polymerase factor sigma-54 3174 45.14 -1 3638763..3639050 + 95 117625495 yhbH APECO1_3232 - putative sigma(54) modulation protein 3175 51.55 0 3639144..3639659 + 171 117625496 ptsN APECO1_3231 - sugar-specific enzyme IIA component of PTS 3176 52.16 0 3639705..3640559 + 284 117625497 - APECO1_3230 - hypothetical protein 3177 49.45 0 3640556..3640828 + 90 117625498 ptsO APECO1_3229 - phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3178 51.50 0 3641042..3641674 + 210 117625499 yrbL APECO1_3228 - hypothetical protein 3179 52.13 0 3641671..3642399 - 242 117625500 mtgA APECO1_3227 - monofunctional biosynthetic peptidoglycan transglycosylase 3180 52.14 0 3642396..3643049 - 217 117625501 yhbL APECO1_3226 - isoprenoid biosynthesis protein 3181 50.66 0 3643279..3645615 - 778 117625502 arcB APECO1_3225 - aerobic respiration control sensor protein ArcB 3182 55.91 +1 3645711..3646640 - 309 117625503 yhcC APECO1_3224 - putative Fe-S oxidoreductase 3183 57.10 +1 3647207..3651775 + 1522 117625504 gltB APECO1_32232 - glutamate synthase subunit alpha 3184 55.74 +1 3651788..3653206 + 472 117625505 gltD APECO1_3223 - glutamate synthase subunit beta 3185 45.81 -1 3653274..3653738 - 154 117625506 yhcH APECO1_3222 - hypothetical protein 3186 58.11 +1 3653735..3654610 - 291 117625507 nanK APECO1_3221 - N-acetylmannosamine kinase 3187 58.12 +1 3654607..3655296 - 229 117625508 nanE APECO1_3220 - N-acetylmannosamine-6-phosphate 2-epimerase 3188 55.82 +1 3655344..3656864 - 506 117625509 nanT APECO1_3219 - putative sialic acid transporter 3189 52.68 0 3656943..3657836 - 297 117625510 nanA APECO1_3218 - N-acetylneuraminate lyase 3190 53.54 0 3657958..3658749 - 263 117625511 nanR APECO1_3217 - transcriptional regulator NanR 3191 54.82 0 3658857..3659354 - 165 117625512 sspB APECO1_3216 - ClpXP protease specificity-enhancing factor 3192 53.68 0 3659360..3659998 - 212 117625513 sspA APECO1_3215 - stringent starvation protein A 3193 52.42 0 3660393..3660785 - 130 117625514 rpsI APECO1_3214 - 30S ribosomal protein S9 3194 50.58 0 3660801..3661229 - 142 117625515 rplM APECO1_3213 - 50S ribosomal protein L13 3195 52.13 0 3661449..3662576 - 375 117625516 yhcM APECO1_3212 - hypothetical protein 3196 55.23 0 3662819..3663229 + 136 117625517 - APECO1_3211 - hypothetical protein 3197 52.27 0 3663322..3664689 + 455 117625518 degQ APECO1_3210 - serine endoprotease 3198 52.34 0 3664779..3665846 + 355 117625519 degS APECO1_3209 - serine endoprotease 3199 51.86 0 3665909..3666847 - 312 117625520 mdh APECO1_3208 - malate dehydrogenase 3200 47.98 0 3667282..3667752 + 156 117625521 argR APECO1_3207 - arginine repressor 3201 46.98 0 3668065..3668379 + 104 117625522 - APECO1_3206 - hypothetical protein 3202 42.49 -1 3668434..3668706 - 90 117625523 yhcO APECO1_3205 - hypothetical protein 3203 51.52 0 3668798..3670765 - 655 117625524 yhcP APECO1_3204 - p-hydroxybenzoic acid efflux subunit AaeB 3204 53.27 0 3670771..3671703 - 310 117625525 yhcQ APECO1_3203 - p-hydroxybenzoic acid efflux subunit AaeA 3205 47.25 0 3671711..3671983 - 90 117625526 - APECO1_3202 - hypothetical protein 3206 52.15 0 3672097..3673026 + 309 117625527 aaeR APECO1_3201 - putative DNA-binding transcriptional regulator 3207 54.84 0 3673154..3674599 - 481 117625528 tldD APECO1_3200 - protease TldD 3208 53.46 0 3674755..3678555 - 1266 117625529 yhdP APECO1_3199 - hypothetical protein 3209 52.18 0 3678623..3680092 - 489 117625530 rng APECO1_3198 - ribonuclease G 3210 54.21 0 3680082..3680675 - 197 117625531 maf APECO1_3197 - Maf-like protein 3211 51.12 0 3680684..3681172 - 162 117625532 mreD APECO1_3196 - rod shape-determining protein MreD 3212 55.80 +1 3681172..3682275 - 367 117625533 mreC APECO1_3195 - cell wall structural complex MreBCD transmembrane component MreC 3213 54.41 0 3682341..3683384 - 347 117625534 mreB APECO1_3194 - cell wall structural complex MreBCD, actin-like component MreB 3214 50.39 0 3683689..3685629 - 646 117625535 yhdA APECO1_3193 - regulatory protein CsrD 3215 55.08 0 3685781..3686755 + 324 117625536 yhdH APECO1_3192 - putative oxidoreductase, Zn-dependent and NAD(P)-binding 3216 51.59 0 3687733..3688203 + 156 117625537 accB APECO1_3191 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3217 52.96 0 3688214..3689563 + 449 117625538 accC APECO1_3190 - acetyl-CoA carboxylase biotin carboxylase subunit 3218 50.33 0 3689655..3690701 - 348 117625539 - APECO1_3189 - hypothetical protein 3219 48.29 0 3690698..3691660 - 320 117625540 - APECO1_3188 - ribokinase family sugar kinase 3220 41.92 -1 3691682..3692671 - 329 117625541 rbsC APECO1_3187 - putative ribose transport system permease protein RbsC 3221 45.33 -1 3692672..3694171 - 499 117625542 rbsA APECO1_3186 - putative ribose transport ATP-binding protein RbsA 3222 44.33 -1 3694232..3695122 - 296 117625543 - APECO1_3185 - putative ribose ABC transporter 3223 47.95 0 3695158..3696012 - 284 117625544 gatY APECO1_3184 - tagatose-bisphosphate aldolase 3224 48.38 0 3696353..3697183 + 276 117625545 - APECO1_3183 - DeoR family transcriptional regulator 3225 47.16 0 3697140..3697790 + 216 117625546 - APECO1_31822 - hypothetical protein 3226 52.48 0 3697869..3698150 + 93 117625547 - APECO1_3182 - hypothetical protein 3227 56.32 +1 3698225..3698485 + 86 117625548 yhdT APECO1_3181 - hypothetical protein 3228 54.53 0 3698469..3699926 + 485 117625549 panF APECO1_3180 - sodium/panthothenate symporter 3229 54.54 0 3699938..3700819 + 293 117625550 prmA APECO1_3179 - ribosomal protein L11 methyltransferase 3230 51.97 0 3701148..3702113 + 321 117625551 dusB APECO1_3178 - tRNA-dihydrouridine synthase B 3231 46.80 0 3702139..3702435 + 98 117625552 fis APECO1_3177 - DNA-binding protein Fis 3232 48.02 0 3702523..3703407 + 294 117625553 yhdJ APECO1_3176 - putative methyltransferase 3233 43.74 -1 3703673..3704335 - 220 117625554 envR APECO1_3175 - DNA-binding transcriptional regulator EnvR 3234 52.59 0 3704734..3705891 + 385 117625555 acrE APECO1_3174 - acriflavine resistance protein E 3235 51.05 0 3705903..3709007 + 1034 117625556 acrF APECO1_3173 - acriflavine resistance protein F 3236 49.51 0 3709912..3710937 + 341 117625557 yhdW APECO1_3172 - putative periplasmic amino-acid ABC transporter binding protein 3237 49.83 0 3710987..3712186 + 399 117625558 yhdX APECO1_3171 - putative amino-acid ABC transporter permease protein yhdX 3238 51.49 0 3712193..3713299 + 368 117625559 yhdY APECO1_3170 - putative transport system permease protein 3239 47.04 0 3713307..3714065 + 252 117625560 yhdZ APECO1_3169 - putative amino-acid ABC transporter ATP-binding protein yhdZ 3240 45.91 -1 3719736..3720506 + 256 117625563 - APECO1_3166 - hypothetical protein 3241 48.11 0 3720736..3721554 - 272 117625564 aroE APECO1_3165 - shikimate 5-dehydrogenase 3242 52.27 0 3721559..3722176 - 205 117625565 yrdC APECO1_3164 - putative ribosome maturation factor 3243 49.72 0 3722136..3722678 - 180 117625566 yrdD APECO1_3163 - DNA topoisomerase 3244 45.57 -1 3722707..3723180 - 157 117625567 - APECO1_3162 - hypothetical protein 3245 50.58 0 3723152..3724276 - 374 117625568 - APECO1_3161 - hypothetical protein 3246 46.67 0 3724406..3724915 + 169 117625569 def APECO1_3160 - peptide deformylase 3247 51.48 0 3724930..3725877 + 315 117625570 fmt APECO1_3159 - methionyl-tRNA formyltransferase 3248 49.69 0 3725929..3727218 + 429 117625571 sun APECO1_3158 - 16S rRNA methyltransferase B 3249 49.89 0 3727240..3728616 + 458 117625572 trkA APECO1_3157 - potassium transporter peripheral membrane component 3250 44.20 -1 3728746..3729159 + 137 117625573 mscL APECO1_3156 - large-conductance mechanosensitive channel 3251 50.00 0 3729430..3729855 - 141 117625574 zntR APECO1_3155 - zinc-responsive transcriptional regulator 3252 46.07 -1 3729866..3730234 - 122 117625575 yhdN APECO1_3154 - hypothetical protein 3253 53.39 0 3730341..3730724 - 127 117625576 rplQ APECO1_3153 - 50S ribosomal protein L17 3254 52.22 0 3730765..3731754 - 329 117625577 rpoA APECO1_3152 - DNA-directed RNA polymerase subunit alpha 3255 50.72 0 3731780..3732400 - 206 117625578 rpsD APECO1_3151 - 30S ribosomal protein S4 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0