IslandPath Analysis: Escherichia coli APEC O1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.94   STD DEV: 4.72
Escherichia coli APEC O1, complete genome - 1..5082025
4428 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3046	 55.65	0	3496028..3497461	-	477	117625365	rfaE	APECO1_3362	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
3047	 55.54	0	3497509..3500421	-	970	117625366	glnE	APECO1_3361	-	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
3048	 54.69	0	3500372..3501673	-	433	117625367	ygiF	APECO1_3360	-	putative adenylate cyclase
3049	 52.33	0	3501915..3502535	+	206	117625368	htrG	APECO1_3359	-	putative signal transduction protein
3050	 56.66	+1	3502599..3503837	+	412	117625369	cca	APECO1_3358	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
3051	 52.92	0	3504025..3504846	-	273	117625370	uppP	APECO1_3357	-	undecaprenyl pyrophosphate phosphatase
3052	 50.68	0	3504937..3505305	-	122	117625371	folB	APECO1_3356	-	bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase
3053	 53.56	0	3505410..3506027	+	205	117625372	ygiH	APECO1_3355	-	putative glycerol-3-phosphate acyltransferase PlsY
3054	 48.94	0	3506040..3507026	-	328	117625373	-	APECO1_3354	-	transcriptional activator TtdR
3055	 53.29	0	3507179..3508090	+	303	117625374	ttdA	APECO1_3353	-	tartrate dehydratase subunit alpha
3056	 53.80	0	3508087..3508692	+	201	117625375	ttdB	APECO1_3352	-	L(+)-tartrate dehydratase subunit beta
3057	 54.58	0	3508740..3510203	+	487	117625376	ygjE	APECO1_3351	-	putative tartrate:succinate antiporter
3058	 56.41	+1	3510246..3511259	-	337	117625377	ygjD	APECO1_3350	-	O-sialoglycoprotein endopeptidase
3059	 52.29	0	3511823..3513568	+	581	117625378	dnaG	APECO1_3349	-	DNA primase
3060	 53.04	0	3513763..3515604	+	613	117625379	rpoD	APECO1_3348	-	RNA polymerase sigma factor RpoD
3061	 53.06	0	3515683..3516189	-	168	117625380	ygjF	APECO1_3347	-	G/U mismatch-specific DNA glycosylase
3062	 56.47	+1	3516443..3517207	-	254	117625381	yqjH	APECO1_3346	-	putative siderophore interacting protein
3063	 53.85	0	3517484..3518107	+	207	117625382	yqjI	APECO1_3345	-	hypothetical protein
3064	 55.03	0	3518261..3519781	-	506	117625383	aer	APECO1_3344	-	aerotaxis sensor receptor, flavoprotein
3065	 54.19	0	3520088..3521578	+	496	117625384	ygjG	APECO1_3343	-	putrescine--2-oxoglutarate aminotransferase
3066	 51.32	0	3522171..3523154	+	327	117625386	ebgR	APECO1_3341	-	DNA-binding transcriptional repressor EbgR
3067	 53.76	0	3523302..3526430	+	1042	117625387	ebgA	APECO1_3340	-	cryptic beta-D-galactosidase subunit alpha
3068	 45.78	-1	3526427..3526876	+	149	117625388	ebgC	APECO1_3339	-	cryptic beta-D-galactosidase subunit beta
3069	 49.44	0	3526939..3528372	+	477	117625389	ygjI	APECO1_3338	-	putative oxidoreductase
3070	 52.10	0	3528506..3529576	+	356	117625390	ygjJ	APECO1_3337	-	hypothetical protein
3071	 54.51	0	3529593..3531944	+	783	117625391	ygjK	APECO1_3336	-	putative glycosyl hydrolase
3072	 56.76	+1	3532115..3534133	+	672	117625392	ygjL	APECO1_3335	-	NADPH 2,4-dienoyl-CoA reductase
3073	 53.91	0	3534251..3535387	-	378	117625393	ygjO	APECO1_3334	-	putative ribosomal RNA small subunit methyltransferase D
3074	 50.36	0	3536052..3536744	+	230	117625394	ygjQ	APECO1_3333	-	hypothetical protein
3075	 51.74	0	3536805..3537809	+	334	117625395	ygjR	APECO1_3332	-	putative oxidoreductase
3076	 53.21	0	3538092..3539057	+	321	117625396	ygjT	APECO1_3331	-	hypothetical protein
3077	 54.78	0	3539381..3540625	+	414	117625397	ygjU	APECO1_3330	-	serine/threonine transporter SstT
3078	 50.36	0	3540629..3541180	-	183	117625398	ygjV	APECO1_3329	-	hypothetical protein
3079	 53.76	0	3541263..3542750	-	495	117625399	uxaA	APECO1_3328	-	altronate hydrolase UxaA
3080	 53.72	0	3542765..3544177	-	470	117625400	uxaC	APECO1_3327	-	glucuronate isomerase
3081	 54.33	0	3544540..3545958	+	472	117625401	exuT	APECO1_3326	-	hexuronate transporter ExuT
3082	 51.14	0	3546073..3546864	+	263	117625402	exuR	APECO1_3325	-	DNA-binding transcriptional repressor ExuR
3083	 50.98	0	3547209..3547871	+	220	117625403	-	APECO1_3324	-	hypothetical protein
3084	 53.65	0	3547875..3548258	+	127	117625404	yqjB	APECO1_3323	-	hypothetical protein
3085	 47.92	0	3548390..3548773	+	127	117625405	yqjC	APECO1_3322	-	hypothetical protein
3086	 55.70	+1	3549050..3549523	+	157	117625406	-	APECO1_3321	-	hypothetical protein
3087	 56.73	+1	3549471..3549812	+	113	117625407	yqjK	APECO1_3320	-	hypothetical protein
3088	 48.86	0	3549909..3550391	+	160	117625408	yqjF	APECO1_3319	-	hypothetical protein
3089	 51.67	0	3550461..3551447	+	328	117625409	yqjG	APECO1_3318	-	putative glutathione S-transferase
3090	 51.22	0	3551730..3552098	+	122	117625410	yhaH	APECO1_3317	-	putative cytochrome
3091	 56.08	+1	3552132..3553028	-	298	117625411	yhaJ	APECO1_3316	-	putative DNA-binding transcriptional regulator
3092	 51.99	0	3553133..3553834	+	233	117625412	-	APECO1_3315	-	putative pirin-related protein
3093	 56.06	+1	3554153..3555463	-	436	117625413	yhaM	APECO1_3314	-	hypothetical protein
3094	 50.60	0	3555491..3556822	-	443	117625414	-	APECO1_3313	-	putative amino acid permease
3095	 53.17	0	3557097..3558467	-	456	117625415	tdcG	APECO1_3312	-	L-serine dehydratase
3096	 52.05	0	3558533..3558970	-	145	117625416	tdcF	APECO1_3311	-	hypothetical protein
3097	 52.42	0	3558936..3561230	-	764	117625417	tdcE	APECO1_3310	-	putative formate acetyltransferase 3
3098	 48.08	0	3561264..3562484	-	406	117625418	tdcD	APECO1_3309	-	propionate/acetate kinase
3099	 48.95	0	3562498..3563829	-	443	117625419	tdcC	APECO1_3308	-	threonine/serine transporter TdcC
3100	 46.26	0	3563851..3564840	-	329	117625420	tdcB	APECO1_3307	-	threonine dehydratase
3101	 42.28	-1	3564933..3565871	-	312	117625421	tdcA	APECO1_3306	-	DNA-binding transcriptional activator TdcA
3102	 31.59	-2	3566061..3566405	+	114	117625422	tdcR	APECO1_3305	-	DNA-binding transcriptional activator TdcR
3103	 59.47	+1	3566924..3567451	+	175	117625423	-	APECO1_3304	-	hypothetical protein
3104	 53.46	0	3567379..3568605	-	408	117625424	garK	APECO1_3303	-	glycerate kinase I
3105	 53.11	0	3568621..3569520	-	299	117625425	garR	APECO1_3302	-	tartronate semialdehyde reductase
3106	 52.53	0	3569541..3570311	-	256	117625426	garL	APECO1_3301	-	alpha-dehydro-beta-deoxy-D-glucarate aldolase
3107	 51.01	0	3570327..3571661	-	444	117625427	garP	APECO1_3300	-	putative (D)-galactarate transporter
3108	 52.61	0	3572036..3573607	+	523	117625428	garD	APECO1_3299	-	putative D-galactarate dehydratase
3109	 52.00	0	3573659..3574483	-	274	117625429	agaR	APECO1_3298	-	DNA-binding transcriptional regulator AgaR
3110	 55.43	0	3574732..3576012	+	426	117625430	agaZ	APECO1_3297	-	putative tagatose 6-phosphate kinase 2
3111	 50.20	0	3575999..3576508	+	169	117625431	agaV	APECO1_3296	-	N-acetylgalactosamine-specific PTS system transporter subunit IIB
3112	 56.54	+1	3576519..3577298	+	259	117625432	-	APECO1_3295	-	putative phosphotransferase system enzyme subunit
3113	 53.13	0	3577288..3578166	+	292	117625433	-	APECO1_3294	-	PTS system, N-acetylgalactosamine-specific IID component
3114	 53.33	0	3578184..3578618	+	144	117625434	agaF	APECO1_3293	-	putative phosphotransferase system enzyme subunit
3115	 57.92	+1	3578594..3579748	+	384	117625435	-	APECO1_3292	-	N-acetylgalactosamine-6-phosphate deacetylase
3116	 56.88	+1	3580097..3581251	+	384	117625436	agaS	APECO1_3291	-	tagatose-6-phosphate ketose/aldose isomerase
3117	 52.61	0	3581264..3582124	+	286	117625437	kbaY	APECO1_3290	-	tagatose-bisphosphate aldolase
3118	 43.19	-1	3582291..3582767	+	158	117625438	agaB	APECO1_3289	-	N-acetylgalactosamine-specific PTS system transporter subunit IIB
3119	 51.00	0	3582806..3583609	+	267	117625439	agaC	APECO1_3288	-	N-acetylgalactosamine-specific PTS system transporter subunit IIC
3120	 48.45	0	3583518..3584390	+	290	117625440	agaD	APECO1_3287	-	N-acetylgalactosamine-specific PTS system transporter subunit IID
3121	 50.26	0	3584391..3585158	+	255	117625441	agaI	APECO1_3286	-	galactosamine-6-phosphate isomerase
3122	 54.40	0	3585208..3586071	-	287	117625442	yraL	APECO1_3284	-	putative methyltransferase
3123	 54.30	0	3586136..3588172	+	678	117625443	yraM	APECO1_3283	-	hypothetical protein
3124	 54.80	0	3588130..3588525	+	131	117625444	yraN	APECO1_3282	-	hypothetical protein
3125	 49.92	0	3588545..3589135	+	196	117625445	-	APECO1_3281	-	DnaA initiator-associating protein DiaA
3126	 53.82	0	3589145..3589720	+	191	117625446	yraP	APECO1_3280	-	hypothetical protein
3127	 57.35	+1	3589833..3590873	-	346	117625447	yraQ	APECO1_3279	-	hypothetical protein
3128	 55.07	0	3590946..3591626	-	226	117625448	-	APECO1_3278	-	hypothetical protein
3129	 51.06	0	3591709..3592227	+	172	117625449	-	APECO1_3277	-	hypothetical protein
3130	 53.38	0	3592207..3592650	-	147	117625450	yhbP	APECO1_3276	-	hypothetical protein
3131	 54.13	0	3592701..3593003	+	100	117625451	yhbQ	APECO1_3275	-	GIY-YIG nuclease superfamily protein
3132	 55.16	0	3592990..3593493	-	167	117625452	yhbS	APECO1_3274	-	acyltransferase
3133	 51.43	0	3593487..3594011	-	174	117625453	yhbT	APECO1_3273	-	putative lipid carrier protein
3134	 56.93	+1	3594220..3595215	+	331	117625454	yhbU	APECO1_3272	-	putative collagenase
3135	 56.30	+1	3595206..3596102	+	298	117625455	yhbV	APECO1_3271	-	putative protease
3136	 56.45	+1	3596183..3597190	+	335	117625456	yhbW	APECO1_3270	-	hypothetical protein
3137	 52.85	0	3597308..3598552	-	414	117625457	mtr	APECO1_3269	-	tryptophan permease
3138	 55.23	0	3598706..3600646	-	646	117625458	deaD	APECO1_3268	-	ATP-dependent RNA helicase DeaD
3139	 48.25	0	3600775..3601659	-	294	117625459	nlpI	APECO1_3267	-	lipoprotein NlpI
3140	 53.06	0	3601768..3603972	-	734	117625460	pnp	APECO1_3266	-	polynucleotide phosphorylase/polyadenylase
3141	 51.85	0	3604150..3604419	-	89	117625461	rpsO	APECO1_3265	-	30S ribosomal protein S15
3142	 52.70	0	3604568..3605512	-	314	117625462	truB	APECO1_3264	-	tRNA pseudouridine synthase B
3143	 52.99	0	3605512..3605913	-	133	117625463	rbfA	APECO1_3263	-	ribosome-binding factor A
3144	 53.09	0	3606077..3608749	-	890	117625464	infB	APECO1_3262	-	translation initiation factor IF-2
3145	 52.69	0	3608774..3610261	-	495	117625465	nusA	APECO1_3261	-	transcription elongation factor NusA
50.94	MEAN

4.72	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.