version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3007 55.84 +1 3452441..3453853 - 470 117625325 sufI APECO1_3402 - repressor protein for FtsI 3008 49.86 0 3453928..3454665 - 245 117625326 plsC APECO1_3401 - 1-acyl-sn-glycerol-3-phosphate acyltransferase 3009 55.07 0 3454900..3457158 - 752 117625327 parC APECO1_3400 - DNA topoisomerase IV subunit A 3010 52.24 0 3457296..3458903 - 535 117625328 ygiS APECO1_3399 - putative binding protein 3011 53.00 0 3459012..3459494 - 160 117625329 ygiV APECO1_3398 - putative transcriptional regulator 3012 51.40 0 3459547..3459939 - 130 117625330 ygiW APECO1_3397 - hypothetical protein 3013 52.58 0 3460091..3460750 + 219 117625331 ygiX APECO1_3396 - DNA-binding transcriptional regulator QseB 3014 52.81 0 3460747..3462096 + 449 117625332 qseC APECO1_3395 - sensor protein QseC 3015 33.63 -2 3462142..3462474 - 110 117625333 - APECO1_3394 - hypothetical protein 3016 35.02 -2 3462481..3463191 - 236 117625334 - APECO1_3393 - hypothetical protein 3017 32.50 -2 3463194..3463673 - 159 117625335 - APECO1_3392 - hypothetical protein 3018 49.83 0 3463923..3464504 + 193 117625336 mdaB APECO1_3391 - modulator of drug activity B 3019 52.03 0 3464894..3465781 - 295 117625338 - APECO1_3389 - putative phosphosugar isomerases 3020 49.01 0 3465778..3466785 - 335 117625339 - APECO1_3388 - iron ABC transporter substrate-binding protein 3021 50.95 0 3466736..3467785 - 349 117625340 - APECO1_3387 - iron ABC transporter permease 3022 54.37 0 3467782..3468765 - 327 117625341 - APECO1_3386 - iron ABC transporter permease 3023 49.26 0 3468762..3469571 - 269 117625342 fepC APECO1_3385 - ferric enterobactin transport ATP-binding protein FepC 3024 47.99 0 3469945..3472086 + 713 117625343 - APECO1_3384 - putative iron compound receptor 3025 53.67 0 3472150..3474042 - 630 117625344 parE APECO1_3383 - DNA topoisomerase IV subunit B 3026 53.95 0 3474071..3474652 - 193 117625345 yqiA APECO1_3382 - esterase YqiA 3027 57.61 +1 3474652..3475347 - 231 117625346 icc APECO1_3381 - cyclic 3',5'-adenosine monophosphate phosphodiesterase 3028 48.23 0 3475504..3475926 - 140 117625347 yqiB APECO1_3380 - hypothetical protein 3029 50.79 0 3475927..3476556 - 209 117625348 nudF APECO1_3379 - ADP-ribose pyrophosphatase NudF 3030 51.34 0 3476755..3478242 + 495 117625349 tolC APECO1_3378 - outer membrane channel protein 3031 55.74 +1 3478357..3479061 + 234 117625350 - APECO1_3377 - hypothetical protein 3032 50.99 0 3479067..3480227 + 386 117625351 ygiC APECO1_3376 - putative synthetase/amidase 3033 49.58 0 3480712..3482508 + 598 117625352 assT APECO1_3375 - arylsulfate sulfotransferase 3034 44.69 -1 3482526..3483194 + 222 117625353 - APECO1_3374 - putative disulfide isomerase 3035 48.51 0 3483209..3483880 + 223 117625354 - APECO1_3373 - putative disulfide oxidoreductase 3036 53.31 0 3483926..3484741 - 271 117625355 ygiD APECO1_3372 - hypothetical protein 3037 53.36 0 3484857..3485630 + 257 117625356 ygiE APECO1_3371 - zinc transporter ZupT 3038 44.33 -1 3486433..3486996 + 187 117625357 - APECO1_3370 - putative fimbrial protein 3039 46.89 0 3487083..3489605 + 840 117625358 yqiG APECO1_3369 - putative outer membrane usher protein YqiG precursor 3040 47.87 0 3489612..3490361 + 249 117625359 yqiH APECO1_3368 - putative periplasmic chaperone YqiH precursor 3041 39.43 -2 3490358..3491407 + 349 117625360 - APECO1_3367 - putative Yqi fimbrial adhesin 3042 53.06 0 3491461..3492114 - 217 117625361 ribB APECO1_3366 - 3,4-dihydroxy-2-butanone 4-phosphate synthase 3043 48.61 0 3492428..3492787 + 119 117625362 yqiC APECO1_3365 - hypothetical protein 3044 43.17 -1 3493292..3493921 + 209 117625363 yqiJ APECO1_3364 - hypothetical protein 3045 50.60 0 3493948..3495609 + 553 117625364 yqiK APECO1_3363 - hypothetical protein 3046 55.65 0 3496028..3497461 - 477 117625365 rfaE APECO1_3362 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3047 55.54 0 3497509..3500421 - 970 117625366 glnE APECO1_3361 - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3048 54.69 0 3500372..3501673 - 433 117625367 ygiF APECO1_3360 - putative adenylate cyclase 3049 52.33 0 3501915..3502535 + 206 117625368 htrG APECO1_3359 - putative signal transduction protein 3050 56.66 +1 3502599..3503837 + 412 117625369 cca APECO1_3358 - multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3051 52.92 0 3504025..3504846 - 273 117625370 uppP APECO1_3357 - undecaprenyl pyrophosphate phosphatase 3052 50.68 0 3504937..3505305 - 122 117625371 folB APECO1_3356 - bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 3053 53.56 0 3505410..3506027 + 205 117625372 ygiH APECO1_3355 - putative glycerol-3-phosphate acyltransferase PlsY 3054 48.94 0 3506040..3507026 - 328 117625373 - APECO1_3354 - transcriptional activator TtdR 3055 53.29 0 3507179..3508090 + 303 117625374 ttdA APECO1_3353 - tartrate dehydratase subunit alpha 3056 53.80 0 3508087..3508692 + 201 117625375 ttdB APECO1_3352 - L(+)-tartrate dehydratase subunit beta 3057 54.58 0 3508740..3510203 + 487 117625376 ygjE APECO1_3351 - putative tartrate:succinate antiporter 3058 56.41 +1 3510246..3511259 - 337 117625377 ygjD APECO1_3350 - O-sialoglycoprotein endopeptidase 3059 52.29 0 3511823..3513568 + 581 117625378 dnaG APECO1_3349 - DNA primase 3060 53.04 0 3513763..3515604 + 613 117625379 rpoD APECO1_3348 - RNA polymerase sigma factor RpoD 3061 53.06 0 3515683..3516189 - 168 117625380 ygjF APECO1_3347 - G/U mismatch-specific DNA glycosylase 3062 56.47 +1 3516443..3517207 - 254 117625381 yqjH APECO1_3346 - putative siderophore interacting protein 3063 53.85 0 3517484..3518107 + 207 117625382 yqjI APECO1_3345 - hypothetical protein 3064 55.03 0 3518261..3519781 - 506 117625383 aer APECO1_3344 - aerotaxis sensor receptor, flavoprotein 3065 54.19 0 3520088..3521578 + 496 117625384 ygjG APECO1_3343 - putrescine--2-oxoglutarate aminotransferase 3066 51.32 0 3522171..3523154 + 327 117625386 ebgR APECO1_3341 - DNA-binding transcriptional repressor EbgR 3067 53.76 0 3523302..3526430 + 1042 117625387 ebgA APECO1_3340 - cryptic beta-D-galactosidase subunit alpha 3068 45.78 -1 3526427..3526876 + 149 117625388 ebgC APECO1_3339 - cryptic beta-D-galactosidase subunit beta 3069 49.44 0 3526939..3528372 + 477 117625389 ygjI APECO1_3338 - putative oxidoreductase 3070 52.10 0 3528506..3529576 + 356 117625390 ygjJ APECO1_3337 - hypothetical protein 3071 54.51 0 3529593..3531944 + 783 117625391 ygjK APECO1_3336 - putative glycosyl hydrolase 3072 56.76 +1 3532115..3534133 + 672 117625392 ygjL APECO1_3335 - NADPH 2,4-dienoyl-CoA reductase 3073 53.91 0 3534251..3535387 - 378 117625393 ygjO APECO1_3334 - putative ribosomal RNA small subunit methyltransferase D 3074 50.36 0 3536052..3536744 + 230 117625394 ygjQ APECO1_3333 - hypothetical protein 3075 51.74 0 3536805..3537809 + 334 117625395 ygjR APECO1_3332 - putative oxidoreductase 3076 53.21 0 3538092..3539057 + 321 117625396 ygjT APECO1_3331 - hypothetical protein 3077 54.78 0 3539381..3540625 + 414 117625397 ygjU APECO1_3330 - serine/threonine transporter SstT 3078 50.36 0 3540629..3541180 - 183 117625398 ygjV APECO1_3329 - hypothetical protein 3079 53.76 0 3541263..3542750 - 495 117625399 uxaA APECO1_3328 - altronate hydrolase UxaA 3080 53.72 0 3542765..3544177 - 470 117625400 uxaC APECO1_3327 - glucuronate isomerase 3081 54.33 0 3544540..3545958 + 472 117625401 exuT APECO1_3326 - hexuronate transporter ExuT 3082 51.14 0 3546073..3546864 + 263 117625402 exuR APECO1_3325 - DNA-binding transcriptional repressor ExuR 3083 50.98 0 3547209..3547871 + 220 117625403 - APECO1_3324 - hypothetical protein 3084 53.65 0 3547875..3548258 + 127 117625404 yqjB APECO1_3323 - hypothetical protein 3085 47.92 0 3548390..3548773 + 127 117625405 yqjC APECO1_3322 - hypothetical protein 3086 55.70 +1 3549050..3549523 + 157 117625406 - APECO1_3321 - hypothetical protein 3087 56.73 +1 3549471..3549812 + 113 117625407 yqjK APECO1_3320 - hypothetical protein 3088 48.86 0 3549909..3550391 + 160 117625408 yqjF APECO1_3319 - hypothetical protein 3089 51.67 0 3550461..3551447 + 328 117625409 yqjG APECO1_3318 - putative glutathione S-transferase 3090 51.22 0 3551730..3552098 + 122 117625410 yhaH APECO1_3317 - putative cytochrome 3091 56.08 +1 3552132..3553028 - 298 117625411 yhaJ APECO1_3316 - putative DNA-binding transcriptional regulator 3092 51.99 0 3553133..3553834 + 233 117625412 - APECO1_3315 - putative pirin-related protein 3093 56.06 +1 3554153..3555463 - 436 117625413 yhaM APECO1_3314 - hypothetical protein 3094 50.60 0 3555491..3556822 - 443 117625414 - APECO1_3313 - putative amino acid permease 3095 53.17 0 3557097..3558467 - 456 117625415 tdcG APECO1_3312 - L-serine dehydratase 3096 52.05 0 3558533..3558970 - 145 117625416 tdcF APECO1_3311 - hypothetical protein 3097 52.42 0 3558936..3561230 - 764 117625417 tdcE APECO1_3310 - putative formate acetyltransferase 3 3098 48.08 0 3561264..3562484 - 406 117625418 tdcD APECO1_3309 - propionate/acetate kinase 3099 48.95 0 3562498..3563829 - 443 117625419 tdcC APECO1_3308 - threonine/serine transporter TdcC 3100 46.26 0 3563851..3564840 - 329 117625420 tdcB APECO1_3307 - threonine dehydratase 3101 42.28 -1 3564933..3565871 - 312 117625421 tdcA APECO1_3306 - DNA-binding transcriptional activator TdcA 3102 31.59 -2 3566061..3566405 + 114 117625422 tdcR APECO1_3305 - DNA-binding transcriptional activator TdcR 3103 59.47 +1 3566924..3567451 + 175 117625423 - APECO1_3304 - hypothetical protein 3104 53.46 0 3567379..3568605 - 408 117625424 garK APECO1_3303 - glycerate kinase I 3105 53.11 0 3568621..3569520 - 299 117625425 garR APECO1_3302 - tartronate semialdehyde reductase 3106 52.53 0 3569541..3570311 - 256 117625426 garL APECO1_3301 - alpha-dehydro-beta-deoxy-D-glucarate aldolase 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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