version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 243 50.25 0 290706..291107 + 133 117622542 crl APECO1_1729 - DNA-binding transcriptional regulator Crl 244 44.82 -1 291217..292278 - 353 117622543 phoE APECO1_1728 - outer membrane phosphoporin protein E 245 55.16 0 292561..293664 + 367 117622544 proB APECO1_1727 - gamma-glutamyl kinase 246 54.94 0 293676..294929 + 417 117622545 proA APECO1_1726 - gamma-glutamyl phosphate reductase 247 46.35 0 295178..295492 - 104 117622546 - APECO1_1725 - hypothetical protein 248 40.10 -2 296225..296608 + 127 117622547 - APECO1_1724 - hypothetical protein 249 35.65 -2 299152..299841 + 229 117622548 - APECO1_1723 - hypothetical protein 250 34.41 -2 299853..300131 + 92 117622549 - APECO1_1722 - hypothetical protein 251 37.04 -2 300264..300668 + 134 117622550 - APECO1_1721 - hypothetical protein 252 40.83 -2 300646..301005 + 119 117622551 - APECO1_1720 - hypothetical protein 253 40.22 -2 301550..301912 + 120 117622552 - APECO1_1719 - hypothetical protein 254 44.51 -1 301931..302959 + 342 117622553 - APECO1_1718 - hypothetical protein 255 40.60 -2 303266..305095 + 609 117622554 - APECO1_1717 - hypothetical protein 256 38.94 -2 305130..305843 + 237 117622555 - APECO1_1716 - hypothetical protein 257 44.19 -1 305925..307259 - 444 117622556 - APECO1_1715 - integrase 258 40.97 -2 307569..307961 - 130 117622557 - APECO1_1714 - integrase 259 30.48 -2 308292..308816 - 174 117622558 - APECO1_1713 - hypothetical protein 260 48.37 0 308942..313072 - 1376 117622559 vat APECO1_1712 - vacuolating autotransporter 261 51.81 0 314071..314346 - 91 117622560 - APECO1_1711 - hypothetical protein 262 43.90 -1 315182..315796 + 204 117622561 yagU APECO1_1710 - hypothetical protein 263 48.79 0 316045..316374 - 109 117622562 ykgJ APECO1_1709 - putative ferredoxin 264 52.91 0 316681..317436 - 251 117622563 yagV APECO1_1708 - hypothetical protein 265 51.64 0 317360..319003 - 547 117622564 yagW APECO1_1707 - hypothetical protein 266 55.11 0 318993..321518 - 841 117622565 yagX APECO1_1706 - hypothetical protein 267 55.09 0 321544..322260 - 238 117622566 yagY APECO1_1705 - hypothetical protein 268 52.38 0 322269..322856 - 195 117622567 matB APECO1_1704 - hypothetical protein 269 39.76 -2 322930..323520 - 196 117622568 ykgK APECO1_1703 - hypothetical protein 270 47.08 0 323944..324234 + 96 117622569 - APECO1_1702 - hypothetical protein 271 46.07 -1 324696..324962 - 88 117622570 rpmE2 APECO1_1701 - 50S ribosomal protein L31 type B 272 44.18 -1 325899..327041 - 380 117622571 - APECO1_1700 - putative NADH-dependent flavin oxidoreductase 273 45.49 -1 327213..328133 - 306 117622572 ycjY APECO1_1699 - hypothetical protein 274 42.53 -1 328227..329216 + 329 117622573 - APECO1_1698 - putative LysR-like transcriptional regulator 275 50.26 0 329341..330309 + 322 117622574 ycjZ APECO1_1697 - putative transcriptional regulator 276 50.61 0 330340..331329 - 329 117622575 - APECO1_1696 - putative aldo/keto reductase 277 50.70 0 331356..332207 - 283 117622576 - APECO1_1695 - 2,5-diketo-D-gluconic acid reductase A 278 51.92 0 332773..337023 + 1416 117622577 eaeH APECO1_1694 - attaching and effacing protein, pathogenesis factor EaeH 279 43.21 -1 337148..338038 - 296 117622578 ykgA APECO1_1693 - putative transcriptional regulator 280 43.16 -1 338238..339122 + 294 117622579 - APECO1_1692 - 2,5-diketo-D-gluconic acid reductase A 281 44.78 -1 339282..339884 - 200 117622580 ykgB APECO1_1691 - hypothetical protein 282 45.45 -1 340232..341584 - 450 117622581 ykgC APECO1_1690 - pyridine nucleotide-disulfide oxidoreductase 283 50.88 0 341784..342638 + 284 117622582 ykgD APECO1_1689 - putative DNA-binding transcriptional regulator 284 50.56 0 343165..343884 + 239 117622583 ykgE APECO1_1688 - hypothetical protein 285 50.31 0 344022..345323 + 433 117622584 ykgG APECO1_1687 - hypothetical protein 286 51.47 0 345163..346011 + 282 117622585 ykgG APECO1_1686 - hypothetical protein 287 37.07 -2 346254..346922 - 222 117622586 ykgH APECO1_1685 - hypothetical protein 288 46.26 0 347106..349418 - 770 117622587 - APECO1_1684 - hypothetical protein 289 47.64 0 349445..350206 - 253 117622588 - APECO1_1683 - hypothetical protein 290 48.93 0 350360..351154 - 264 117622589 - APECO1_1682 - hypothetical protein 291 42.45 -1 351484..352086 - 200 117622590 - APECO1_1681 - hypothetical protein 292 41.49 -2 352811..353092 + 93 117622591 - APECO1_1680 - hypothetical protein 293 58.26 +1 353117..354721 - 534 117622592 betA APECO1_1679 - choline dehydrogenase 294 57.52 +1 354819..356294 - 491 117622593 betB APECO1_1678 - betaine aldehyde dehydrogenase 295 56.28 +1 356305..356901 - 198 117622594 betI APECO1_1677 - transcriptional regulator BetI 296 55.01 0 357021..359054 + 677 117622595 betT APECO1_1676 - choline transport protein BetT 297 45.48 -1 359926..361020 + 364 117622596 yahA APECO1_1675 - putative DNA-binding transcriptional regulator 298 50.16 0 361062..361994 - 310 117622597 yahB APECO1_1674 - putative DNA-bindng transcriptional regulator 299 54.02 0 362086..362583 - 165 117622598 yahC APECO1_1673 - hypothetical protein 300 45.38 -1 362841..363446 + 201 117622599 yahD APECO1_1672 - putative transcription factor 301 47.34 0 363486..364349 + 287 117622600 yahE APECO1_1671 - hypothetical protein 302 54.84 0 364339..365886 + 515 117622601 yahF APECO1_1670 - acyl-CoA synthetase 303 58.28 +1 365886..367304 + 472 117622602 - APECO1_1669 - hypothetical protein 304 56.26 +1 367458..368408 + 316 117622603 yahI APECO1_1668 - putative carbamate kinase 305 56.11 +1 368418..369800 + 460 117622604 yahJ APECO1_1667 - deaminase 306 45.26 -1 370098..370508 + 136 117622605 - APECO1_1666 - hypothetical protein 307 47.82 0 370759..371745 + 328 117622606 - APECO1_1665 - putative periplasmic binding protein, substrate ribose 308 51.45 0 371794..373278 + 494 117622607 - APECO1_1664 - sugar ABC transporter ATP-binding protein 309 50.82 0 373271..374242 + 323 117622608 - APECO1_1663 - ribose ABC transporter permease 310 51.47 0 374209..375195 + 328 117622609 - APECO1_1662 - putative permease component of transport system 311 52.76 0 375282..376331 + 349 117622610 yahK APECO1_1661 - putative zinc-type alcohol dehydrogenase-like protein YahK 312 49.26 0 377215..377886 - 223 117622611 yahN APECO1_1660 - putative cytochrome subunit of dehydrogenase 313 38.77 -2 378033..378308 + 91 117622612 yahO APECO1_1659 - hypothetical protein 314 55.64 0 378409..379995 - 528 117622613 prpR APECO1_1658 - DNA-binding transcriptional activator 315 56.00 +1 380234..381124 + 296 117622614 prpB APECO1_1657 - 2-methylisocitrate lyase 316 55.47 0 381169..382338 + 389 117622615 prpC APECO1_1656 - methylcitrate synthase 317 56.68 +1 382372..383823 + 483 117622616 prpD APECO1_1655 - 2-methylcitrate dehydratase 318 57.34 +1 383863..385749 + 628 117622617 prpE APECO1_1654 - propionyl-CoA synthetase 319 54.21 0 386074..387333 + 419 117622618 codB APECO1_1653 - cytosine permease 320 53.35 0 387308..388606 + 432 117622619 codA APECO1_1652 - cytosine deaminase 321 43.44 -1 388727..389389 - 220 117622620 lacA APECO1_1651 - galactoside O-acetyltransferase 322 46.01 -1 389404..390657 - 417 117622621 lacY APECO1_1650 - galactoside permease 323 57.04 +1 390709..393783 - 1024 117622622 lacZ APECO1_1649 - beta-D-galactosidase 324 56.14 +1 393907..394998 - 363 117622623 lacI APECO1_1648 - lac repressor 325 48.15 0 395191..395730 + 179 117622624 yaiL APECO1_1647 - nucleoprotein/polynucleotide-associated enzyme 326 48.32 0 395956..396789 - 277 117622625 yaiM APECO1_1646 - hypothetical protein 327 53.42 0 396882..397991 - 369 117622626 adhC APECO1_1645 - alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent 328 53.20 0 398026..398322 - 98 117622627 frmR APECO1_1644 - regulator protein FrmR 329 49.48 0 398490..399263 - 257 117622628 yaiO APECO1_1643 - hypothetical protein 330 45.99 -1 399265..399975 - 236 117622629 - APECO1_1642 - putative transferase 331 50.04 0 399824..401020 - 398 117622630 yaiP APECO1_1641 - putative glucosyltransferase 332 42.65 -1 401030..401716 - 228 117622631 - APECO1_1640 - hypothetical protein 333 54.90 0 402247..403266 + 339 117622632 tauA APECO1_1639 - taurine transporter substrate binding subunit 334 55.08 0 403279..404046 + 255 117622633 tauB APECO1_1638 - taurine transporter ATP-binding subunit 335 58.94 +1 404043..404870 + 275 117622634 tauC APECO1_1637 - taurine transporter subunit 336 54.58 0 404867..405718 + 283 117622635 tauD APECO1_1636 - taurine dioxygenase 337 53.97 0 405758..406765 - 335 117622636 hemB APECO1_1635 - delta-aminolevulinic acid dehydratase 338 45.92 -1 407258..410245 + 995 117622637 - APECO1_1634 - putative structural protein 339 40.21 -2 410286..410954 + 222 117622638 yaiV APECO1_1633 - putative DNA-binding transcriptional regulator 340 55.26 0 410955..412085 - 376 117622639 ampH APECO1_1632 - beta-lactamase/D-alanine carboxypeptidase 341 51.02 0 412458..413684 + 408 117622640 sbmA APECO1_1631 - transport protein 342 53.88 0 413697..414791 + 364 117622641 yaiW APECO1_1630 - hypothetical protein 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0