version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2546 54.31 0 2934596..2935801 - 401 117624863 - APECO1_3893 - major capsid protein precursor 2547 54.15 0 2935816..2936502 - 228 117624864 - APECO1_3892 - pro-head protease 2548 56.09 +1 2936444..2937559 - 371 117624865 - APECO1_3891 - phage portal protein 2549 54.44 0 2937879..2939612 - 577 117624866 - APECO1_3890 - bacteriophage V large terminase subunit 2550 58.59 +1 2939609..2940103 - 164 117624867 - APECO1_3889 - bacteriophage V small terminase subunit 2551 58.40 +1 2940229..2940579 - 116 117624868 - APECO1_3888 - putative phage endonuclease 2552 48.40 0 2941550..2941987 - 145 117624869 - APECO1_3887 - putative phage lysis protein 2553 49.06 0 2941984..2942460 - 158 117624870 - APECO1_3886 - putative muramidase 2554 44.69 -1 2942447..2942851 - 134 117624871 - APECO1_3885 - hypothetical protein 2555 33.04 -2 2942904..2943239 - 111 117624872 - APECO1_3884 - hypothetical protein 2556 47.14 0 2943425..2944177 - 250 117624873 - APECO1_3883 - Qin-like prophage; antitermination protein Q 2557 55.24 0 2944191..2945144 - 317 117624874 - APECO1_3882 - hypothetical protein 2558 50.63 0 2945188..2945985 - 265 117624875 - APECO1_3881 - hypothetical protein 2559 56.67 +1 2946005..2946394 - 129 117624876 - APECO1_3880 - bacteriophage V crossover junction endodeoxyribonuclease 2560 55.05 0 2946391..2946717 - 108 117624877 - APECO1_3879 - hypothetical protein 2561 53.98 0 2946714..2947367 - 217 117624878 - APECO1_3878 - DNA adenine methylase 2562 54.19 0 2947367..2947855 - 162 117624879 - APECO1_3877 - hypothetical protein 2563 53.08 0 2947858..2948799 - 313 117624880 - APECO1_3876 - hypothetical protein 2564 49.56 0 2948809..2949147 - 112 117624881 ymfM APECO1_3875 - hypothetical protein 2565 51.06 0 2949144..2949707 - 187 117624882 ymfL APECO1_3874 - e14 prophage; DNA-binding transcriptional regulator 2566 40.52 -2 2949739..2950044 - 101 117624883 - APECO1_3873 - hypothetical protein 2567 44.74 -1 2950030..2950704 + 224 117624884 - APECO1_3872 - putative phage repressor 2568 43.47 -1 2950907..2951419 - 170 117624885 - APECO1_3871 - hypothetical protein 2569 53.74 0 2951570..2952250 + 226 117624886 - APECO1_3870 - hypothetical protein 2570 46.06 -1 2952316..2953140 + 274 117624887 yfdQ APECO1_3869 - hypothetical protein 2571 45.90 -1 2953268..2953792 + 174 117624888 yfdR APECO1_3868 - hypothetical protein 2572 28.37 -2 2953901..2954767 + 288 117624889 - APECO1_3867 - hypothetical protein 2573 44.08 -1 2954976..2956148 + 390 117624890 - APECO1_3866 - hypothetical protein 2574 37.83 -2 2956140..2956739 - 199 117624891 - APECO1_3865 - hypothetical protein 2575 42.51 -1 2956768..2957094 - 108 117624892 - APECO1_3864 - hypothetical protein 2576 42.65 -1 2957099..2958010 - 303 117624893 - APECO1_3863 - hypothetical protein 2577 36.74 -2 2957976..2958239 + 87 117624894 - APECO1_3862 - hypothetical protein 2578 54.91 0 2958871..2959848 + 325 117624895 ygaT APECO1_3861 - hypothetical protein 2579 56.74 +1 2959868..2961136 + 422 117624896 ygaF APECO1_3860 - hypothetical protein 2580 56.73 +1 2961159..2962607 + 482 117624897 gabD APECO1_3859 - succinate-semialdehyde dehydrogenase I 2581 58.20 +1 2962615..2963901 + 428 117624898 gabT APECO1_3858 - 4-aminobutyrate aminotransferase 2582 51.50 0 2964076..2965539 + 487 117624899 gabP APECO1_3857 - gamma-aminobutyrate transporter 2583 53.30 0 2965542..2966222 + 226 117624900 ygaE APECO1_38572 - DNA-binding transcriptional regulator CsiR 2584 48.22 0 2966223..2966672 - 149 117624901 ygaU APECO1_3856 - hypothetical protein 2585 52.00 0 2967097..2967396 + 99 117624902 ygaV APECO1_3855 - DNA-binding transcriptional regulator 2586 46.10 -1 2967406..2967930 + 174 117624903 ygaP APECO1_3854 - inner membrane protein with hydrolase activity 2587 48.40 0 2967977..2968381 - 134 117624904 stpA APECO1_3853 - DNA binding protein, nucleoid-associated 2588 48.67 0 2969048..2969497 + 149 117624905 ygaW APECO1_3852 - hypothetical protein 2589 47.25 0 2969534..2969878 - 114 117624906 ygaC APECO1_3851 - hypothetical protein 2590 53.51 0 2970018..2970359 + 113 117624907 ygaM APECO1_3850 - hypothetical protein 2591 52.51 0 2970416..2971750 - 444 117624908 - APECO1_3849 - GntR family transcriptional regulator 2592 52.31 0 2971838..2972269 + 143 117624909 - APECO1_3848 - hypothetical protein 2593 56.20 +1 2972720..2973130 + 136 117624910 nrdI APECO1_3847 - ribonucleotide reductase stimulatory protein 2594 51.95 0 2973142..2975247 + 701 117624911 nrdE APECO1_3846 - ribonucleotide-diphosphate reductase subunit alpha 2595 48.44 0 2975257..2976216 + 319 117624912 nrdF APECO1_3845 - ribonucleotide-diphosphate reductase subunit beta 2596 49.13 0 2976572..2977774 + 400 117624913 proV APECO1_3844 - glycine betaine transporter ATP-binding subunit 2597 58.31 +1 2977767..2978831 + 354 117624914 proW APECO1_3843 - glycine betaine transporter membrane protein 2598 52.37 0 2978889..2979881 + 330 117624915 proX APECO1_3842 - glycine betaine transporter periplasmic subunit 2599 54.85 0 2980073..2981257 + 394 117624916 ygaY APECO1_3841 - putative transport protein 2600 52.57 0 2981381..2982118 + 245 117624917 ygaZ APECO1_3840 - hypothetical protein 2601 54.17 0 2982108..2982443 + 111 117624918 ygaH APECO1_3839 - hypothetical protein 2602 49.53 0 2982534..2983064 + 176 117624919 mprA APECO1_3838 - transcriptional repressor MprA 2603 56.27 +1 2984380..2985918 + 512 117624920 emrB APECO1_3837 - multidrug resistance protein B 2604 52.26 0 2986176..2986883 + 235 117624921 - APECO1_3836 - hypothetical protein 2605 53.01 0 2986880..2987992 + 370 117624922 - APECO1_3835 - hypothetical protein 2606 51.94 0 2988043..2988558 - 171 117624923 luxS APECO1_3834 - S-ribosylhomocysteinase 2607 51.93 0 2988709..2990031 - 440 117624924 gshA APECO1_3833 - glutamate--cysteine ligase 2608 48.81 0 2990338..2990673 - 111 117624925 yqaA APECO1_3832 - hypothetical protein 2609 54.32 0 2990763..2991329 - 188 117624926 yqaB APECO1_3831 - fructose-1-phosphatase 2610 53.90 0 2992939..2995569 - 876 117624928 alaS APECO1_3829 - alanyl-tRNA synthetase 2611 51.90 0 2995697..2996197 - 166 117624929 recX APECO1_3828 - recombination regulator RecX 2612 53.48 0 2996266..2997342 - 358 117624930 recA APECO1_3827 - recombinase A 2613 55.22 0 2997407..2997904 - 165 117624931 ygaD APECO1_3826 - competence damage-inducible protein A 2614 54.76 0 2998049..2999182 - 377 117624932 mltB APECO1_3825 - murein hydrolase B 2615 49.29 0 2999391..2999954 + 187 117624933 srlA APECO1_3824 - PTS system, glucitol/sorbitol-specific IIC2 component 2616 55.73 +1 2999951..3000910 + 319 117624934 srlE APECO1_3823 - PTS system, glucitol/sorbitol-specific IIBC component 2617 55.38 0 3000921..3001292 + 123 117624935 srlB APECO1_3822 - glucitol/sorbitol-specific PTS system component IIA 2618 53.21 0 3001296..3002075 + 259 117624936 srlD APECO1_3821 - sorbitol-6-phosphate dehydrogenase 2619 54.17 0 3002181..3002540 + 119 117624937 gutM APECO1_3820 - DNA-binding transcriptional activator GutM 2620 48.71 0 3002607..3003380 + 257 117624938 srlR APECO1_3819 - DNA-bindng transcriptional repressor SrlR 2621 56.73 +1 3003373..3004338 + 321 117624939 gutQ APECO1_3818 - D-arabinose 5-phosphate isomerase 2622 56.63 +1 3004335..3005849 - 504 117624940 ygaA APECO1_3817 - anaerobic nitric oxide reductase transcription regulator 2623 53.54 0 3006036..3007475 + 479 117624941 norV APECO1_3816 - anaerobic nitric oxide reductase flavorubredoxin 2624 54.41 0 3007472..3008605 + 377 117624942 ygbD APECO1_3815 - nitric oxide reductase 2625 57.83 +1 3008829..3011081 - 750 117624943 hypF APECO1_3814 - hydrogenase maturation protein HypF 2626 52.46 0 3011234..3011761 - 175 117624944 hydN APECO1_3813 - electron transport protein HydN 2627 52.45 0 3011910..3012929 - 339 117624945 ascG APECO1_3812 - ascBF operon repressor 2628 56.04 +1 3013180..3014637 + 485 117624946 ascF APECO1_3811 - cellobiose/arbutin/salicin-specific PTS system components IIBC 2629 52.34 0 3014640..3016070 + 476 117624947 ascB APECO1_3810 - cryptic 6-phospho-beta-glucosidase 2630 45.48 -1 3016168..3016587 - 139 117624948 - APECO1_3809 - hypothetical protein 2631 53.50 0 3016823..3017293 - 156 117624949 hycI APECO1_3808 - hydrogenase 3 maturation protease 2632 53.04 0 3017286..3017696 - 136 117624950 hycH APECO1_3807 - formate hydrogenlyase maturation protein HycH 2633 57.42 +1 3017693..3018460 - 255 117624951 hycG APECO1_3806 - hydrogenase 3 and formate hydrogenase complex, HycG subunit 2634 55.43 0 3018460..3019002 - 180 117624952 hycF APECO1_3805 - formate hydrogenlyase complex iron-sulfur subunit 2635 56.49 +1 3019012..3020721 - 569 117624953 hycE APECO1_3804 - hydrogenase 3, large subunit 2636 58.01 +1 3020739..3021662 - 307 117624954 hycD APECO1_3803 - membrane-spanning protein of formate hydrogenase 2637 57.69 +1 3021665..3023491 - 608 117624955 hycC APECO1_3802 - formate hydrogenlyase subunit 3 2638 55.56 0 3023488..3024099 - 203 117624956 hycB APECO1_3801 - hydrogenase 3, Fe-S subunit 2639 50.65 0 3024224..3024685 - 153 117624957 hycA APECO1_3800 - formate hydrogenlyase regulatory protein HycA 2640 52.89 0 3024885..3025247 + 120 117624958 hypA APECO1_3799 - hydrogenase nickel incorporation protein 2641 55.90 +1 3025251..3026123 + 290 117624959 hypB APECO1_3798 - hydrogenase nickel incorporation protein HypB 2642 54.21 0 3026114..3026386 + 90 117624960 hypC APECO1_3797 - hydrogenase isoenzymes formation protein 2643 54.28 0 3026386..3027507 + 373 117624961 hypD APECO1_3796 - protein required for maturation of hydrogenases 2644 57.48 +1 3027546..3028514 + 322 117624962 hypE APECO1_3795 - carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein 2645 51.80 0 3028588..3030666 + 692 117624963 fhlA APECO1_3794 - formate hydrogenlyase transcriptional activator 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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