version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2486 55.65 0 2871390..2871761 - 123 117624802 yfiF APECO1_39512 - tRNA/rRNA methyltransferase YfiF 2487 55.39 0 2871967..2872569 + 200 117624803 yfiF APECO1_3951 - tRNA/rRNA methyltransferase YfiF 2488 49.76 0 2872638..2873057 + 139 117624804 trxC APECO1_3950 - thioredoxin 2 2489 51.45 0 2873102..2873824 + 240 117624805 yfiP APECO1_3949 - hypothetical protein 2490 54.11 0 2873856..2876516 + 886 117624806 yfiQ APECO1_3948 - acyl-CoA synthetase (NDP forming) 2491 49.01 0 2876627..2877985 + 452 117624807 pssA APECO1_3947 - phosphatidylserine synthase 2492 56.04 +1 2878082..2878354 + 90 117624808 yfiM APECO1_3946 - hypothetical protein 2493 47.56 0 2878351..2879742 - 463 117624809 kgtP APECO1_3945 - alpha-ketoglutarate transporter 2494 48.21 0 2879972..2880307 - 111 117624810 - APECO1_3944 - ISEc12 putative ATP-binding protein 2495 48.12 0 2880735..2882276 - 513 117624811 - APECO1_3943 - transposase for ISEc12 2496 55.56 0 2882841..2883272 + 143 117624812 - APECO1_3942 - hypothetical protein 2497 49.10 0 2883791..2884513 - 240 117624813 - APECO1_3941 - putative transposase subunit 2498 48.46 0 2884618..2884941 - 107 117624814 - APECO1_3940 - putative transposase subunit 2499 51.31 0 2890825..2893410 - 861 117624816 clpB APECO1_3938 - protein disaggregation chaperone 2500 54.10 0 2893528..2894259 - 243 117624817 yfiH APECO1_3937 - hypothetical protein 2501 52.70 0 2894256..2895236 - 326 117624818 rluD APECO1_3936 - 23S rRNA pseudouridine synthase D 2502 50.54 0 2895371..2896108 + 245 117624819 yfiO APECO1_3935 - outer membrane protein assembly complex subunit YfiO 2503 48.84 0 2896969..2898129 + 386 117624820 pheA APECO1_3934 - bifunctional chorismate mutase/prephenate dehydratase 2504 52.32 0 2898172..2899293 - 373 117624821 tyrA APECO1_3933 - bifunctional chorismate mutase/prephenate dehydrogenase 2505 51.40 0 2899304..2900443 - 379 117624822 aroF APECO1_3932 - phospho-2-dehydro-3-deoxyheptonate aldolase 2506 45.36 -1 2900584..2900949 + 121 117624823 yfiL APECO1_3931 - hypothetical protein 2507 43.93 -1 2901098..2901616 + 172 117624824 yfiR APECO1_3930 - hypothetical protein 2508 48.00 0 2901606..2902832 + 408 117624825 yfiN APECO1_3929 - hypothetical protein 2509 51.14 0 2902848..2903330 + 160 117624826 yfiB APECO1_3928 - putative outer membrane lipoprotein 2510 48.28 0 2903407..2903754 - 115 117624827 rplS APECO1_3927 - 50S ribosomal protein L19 2511 52.55 0 2903796..2904128 - 110 117624828 trmD APECO1_39262 - tRNA (guanine-1-)-methyltransferase 2512 54.17 0 2904206..2904565 - 119 117624829 trmD APECO1_3926 - tRNA (guanine-1-)-methyltransferase 2513 48.73 0 2904596..2905147 - 183 117624830 rimM APECO1_3925 - 16S rRNA-processing protein 2514 51.13 0 2905163..2905471 - 102 117624831 rpsP APECO1_3924 - 30S ribosomal protein S16 2515 54.26 0 2905548..2906909 - 453 117624832 ffh APECO1_3923 - signal recognition particle protein 2516 51.56 0 2907001..2907867 + 288 117624833 ypjD APECO1_3922 - hypothetical protein 2517 51.29 0 2907933..2909174 + 413 117624834 - APECO1_3921 - hypothetical protein 2518 48.61 0 2909196..2909948 + 250 117624835 - APECO1_3920 - hypothetical protein 2519 50.28 0 2909945..2910823 + 292 117624836 ppnK APECO1_3919 - inorganic polyphosphate/ATP-NAD kinase 2520 51.99 0 2910909..2912570 + 553 117624837 recN APECO1_3918 - recombination and repair protein 2521 49.71 0 2912719..2913060 + 113 117624838 smpA APECO1_3917 - hypothetical protein 2522 46.33 0 2913402..2913878 - 158 117624839 yfjG APECO1_3916 - hypothetical protein 2523 51.55 0 2914010..2914492 + 160 117624840 smpB APECO1_3915 - SsrA-binding protein 2524 48.63 0 2915071..2915325 - 84 117624841 - APECO1_3914 - hypothetical protein 2525 43.22 -1 2915649..2916437 + 262 117624842 - APECO1_3913 - hypothetical protein 2526 42.18 -1 2916525..2916818 - 97 117624843 - APECO1_39122 - hypothetical protein 2527 45.35 -1 2917029..2917802 - 257 117624844 - APECO1_3912 - hypothetical protein 2528 40.94 -2 2918794..2920608 + 604 117624845 - APECO1_3911 - hypothetical protein 2529 48.69 0 2920995..2921489 + 164 117624846 - APECO1_3910 - putative tail fiber protein 2530 47.93 0 2921489..2922091 + 200 117624847 - APECO1_3909 - putative tail fiber assembly protein 2531 45.05 -1 2922063..2922506 - 147 117624848 - APECO1_3908 - hypothetical protein 2532 58.12 +1 2923256..2923840 - 194 117624849 - APECO1_3907 - hypothetical protein 2533 57.70 +1 2923831..2924889 - 352 117624850 - APECO1_3906 - bacteriophage V tail protein 2534 57.58 +1 2924876..2925304 - 142 117624851 - APECO1_3905 - bacteriophage V tail protein 2535 57.19 +1 2925301..2925849 - 182 117624852 - APECO1_3904 - bacteriophage V tail protein 2536 58.70 +1 2925849..2926928 - 359 117624853 - APECO1_3903 - putative tail protein 2537 55.94 +1 2926925..2928295 - 456 117624854 - APECO1_3902 - bacteriophage V tail/DNA circulation protein 2538 52.18 0 2928314..2930149 - 611 117624855 - APECO1_3901 - bacteriophage V tail protein 2539 52.72 0 2930148..2930441 + 97 117624856 - APECO1_3900 - hypothetical protein 2540 53.50 0 2930560..2930916 - 118 117624857 - APECO1_3899 - hypothetical protein 2541 57.45 +1 2930916..2932412 - 498 117624858 - APECO1_3898 - bacteriophage V tail sheath pro 2542 54.90 0 2932575..2933135 - 186 117624859 - APECO1_3897 - hypothetical protein 2543 56.61 +1 2933132..2933638 - 168 117624860 - APECO1_3896 - hypothetical protein 2544 57.66 +1 2933613..2934023 - 136 117624861 - APECO1_3895 - bacteriophage head tail adaptor 2545 53.70 0 2934020..2934343 - 107 117624862 - APECO1_3894 - hypothetical protein 2546 54.31 0 2934596..2935801 - 401 117624863 - APECO1_3893 - major capsid protein precursor 2547 54.15 0 2935816..2936502 - 228 117624864 - APECO1_3892 - pro-head protease 2548 56.09 +1 2936444..2937559 - 371 117624865 - APECO1_3891 - phage portal protein 2549 54.44 0 2937879..2939612 - 577 117624866 - APECO1_3890 - bacteriophage V large terminase subunit 2550 58.59 +1 2939609..2940103 - 164 117624867 - APECO1_3889 - bacteriophage V small terminase subunit 2551 58.40 +1 2940229..2940579 - 116 117624868 - APECO1_3888 - putative phage endonuclease 2552 48.40 0 2941550..2941987 - 145 117624869 - APECO1_3887 - putative phage lysis protein 2553 49.06 0 2941984..2942460 - 158 117624870 - APECO1_3886 - putative muramidase 2554 44.69 -1 2942447..2942851 - 134 117624871 - APECO1_3885 - hypothetical protein 2555 33.04 -2 2942904..2943239 - 111 117624872 - APECO1_3884 - hypothetical protein 2556 47.14 0 2943425..2944177 - 250 117624873 - APECO1_3883 - Qin-like prophage; antitermination protein Q 2557 55.24 0 2944191..2945144 - 317 117624874 - APECO1_3882 - hypothetical protein 2558 50.63 0 2945188..2945985 - 265 117624875 - APECO1_3881 - hypothetical protein 2559 56.67 +1 2946005..2946394 - 129 117624876 - APECO1_3880 - bacteriophage V crossover junction endodeoxyribonuclease 2560 55.05 0 2946391..2946717 - 108 117624877 - APECO1_3879 - hypothetical protein 2561 53.98 0 2946714..2947367 - 217 117624878 - APECO1_3878 - DNA adenine methylase 2562 54.19 0 2947367..2947855 - 162 117624879 - APECO1_3877 - hypothetical protein 2563 53.08 0 2947858..2948799 - 313 117624880 - APECO1_3876 - hypothetical protein 2564 49.56 0 2948809..2949147 - 112 117624881 ymfM APECO1_3875 - hypothetical protein 2565 51.06 0 2949144..2949707 - 187 117624882 ymfL APECO1_3874 - e14 prophage; DNA-binding transcriptional regulator 2566 40.52 -2 2949739..2950044 - 101 117624883 - APECO1_3873 - hypothetical protein 2567 44.74 -1 2950030..2950704 + 224 117624884 - APECO1_3872 - putative phage repressor 2568 43.47 -1 2950907..2951419 - 170 117624885 - APECO1_3871 - hypothetical protein 2569 53.74 0 2951570..2952250 + 226 117624886 - APECO1_3870 - hypothetical protein 2570 46.06 -1 2952316..2953140 + 274 117624887 yfdQ APECO1_3869 - hypothetical protein 2571 45.90 -1 2953268..2953792 + 174 117624888 yfdR APECO1_3868 - hypothetical protein 2572 28.37 -2 2953901..2954767 + 288 117624889 - APECO1_3867 - hypothetical protein 2573 44.08 -1 2954976..2956148 + 390 117624890 - APECO1_3866 - hypothetical protein 2574 37.83 -2 2956140..2956739 - 199 117624891 - APECO1_3865 - hypothetical protein 2575 42.51 -1 2956768..2957094 - 108 117624892 - APECO1_3864 - hypothetical protein 2576 42.65 -1 2957099..2958010 - 303 117624893 - APECO1_3863 - hypothetical protein 2577 36.74 -2 2957976..2958239 + 87 117624894 - APECO1_3862 - hypothetical protein 2578 54.91 0 2958871..2959848 + 325 117624895 ygaT APECO1_3861 - hypothetical protein 2579 56.74 +1 2959868..2961136 + 422 117624896 ygaF APECO1_3860 - hypothetical protein 2580 56.73 +1 2961159..2962607 + 482 117624897 gabD APECO1_3859 - succinate-semialdehyde dehydrogenase I 2581 58.20 +1 2962615..2963901 + 428 117624898 gabT APECO1_3858 - 4-aminobutyrate aminotransferase 2582 51.50 0 2964076..2965539 + 487 117624899 gabP APECO1_3857 - gamma-aminobutyrate transporter 2583 53.30 0 2965542..2966222 + 226 117624900 ygaE APECO1_38572 - DNA-binding transcriptional regulator CsiR 2584 48.22 0 2966223..2966672 - 149 117624901 ygaU APECO1_3856 - hypothetical protein 2585 52.00 0 2967097..2967396 + 99 117624902 ygaV APECO1_3855 - DNA-binding transcriptional regulator 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0