version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2462 53.07 0 2843730..2845112 - 460 117624778 yfhK APECO1_3975 - putative sensor-like histidine kinase YfhK 2463 56.66 +1 2845733..2849620 - 1295 117624779 purL APECO1_3974 - phosphoribosylformylglycinamidine synthase 2464 50.46 0 2850019..2851437 + 472 117624780 yfhD APECO1_3973 - putative transglycosylase 2465 52.89 0 2851434..2851970 - 178 117624781 tadA APECO1_3972 - tRNA-specific adenosine deaminase 2466 50.81 0 2852767..2853687 + 306 117624782 yfhH APECO1_3970 - putative DNA-binding transcriptional regulator 2467 44.83 -1 2853743..2854003 + 86 117624783 yfhL APECO1_3969 - putative 4Fe-4S cluster-containing protein 2468 49.87 0 2854698..2855078 - 126 117624784 acpS APECO1_3968 - 4'-phosphopantetheinyl transferase 2469 55.42 0 2855078..2855824 - 248 117624785 pdxJ APECO1_3967 - pyridoxal phosphate biosynthetic protein PdxJ 2470 54.18 0 2855821..2856549 - 242 117624786 recO APECO1_3966 - DNA repair protein RecO 2471 51.99 0 2856561..2857466 - 301 117624787 era APECO1_3965 - GTP-binding protein Era 2472 51.25 0 2857463..2858143 - 226 117624788 rnc APECO1_3964 - ribonuclease III 2473 52.00 0 2858410..2859384 - 324 117624789 lepB APECO1_3963 - lsignal peptidase I 2474 53.28 0 2859400..2861199 - 599 117624790 lepA APECO1_3962 - GTP-binding protein LepA 2475 55.21 0 2861397..2861876 - 159 117624791 rseC APECO1_3961 - SoxR reducing system protein RseC 2476 51.31 0 2861873..2862829 - 318 117624792 rseB APECO1_3960 - periplasmic negative regulator of sigmaE 2477 51.77 0 2862829..2863479 - 216 117624793 rseA APECO1_3959 - anti-RNA polymerase sigma factor SigE 2478 48.77 0 2863512..2864120 - 202 117624794 rpoE APECO1_3958 - RNA polymerase sigma factor RpoE 2479 53.11 0 2864495..2866117 + 540 117624795 nadB APECO1_3957 - L-aspartate oxidase 2480 51.28 0 2866102..2866959 - 285 117624796 yfiC APECO1_3956 - hypothetical protein 2481 54.46 0 2866971..2868305 + 444 117624797 srmB APECO1_39552 - ATP-dependent RNA helicase SrmB 2482 48.33 0 2868338..2869264 - 308 117624798 yfiE APECO1_3955 - putative transcriptional regulator YfiE 2483 50.85 0 2869322..2869909 + 195 117624799 yfiK APECO1_3954 - neutral amino-acid efflux protein 2484 47.92 0 2869965..2870348 - 127 117624800 yfiD APECO1_3953 - autonomous glycyl radical cofactor GrcA 2485 52.03 0 2870653..2871342 + 229 117624801 ung APECO1_3952 - uracil-DNA glycosylase 2486 55.65 0 2871390..2871761 - 123 117624802 yfiF APECO1_39512 - tRNA/rRNA methyltransferase YfiF 2487 55.39 0 2871967..2872569 + 200 117624803 yfiF APECO1_3951 - tRNA/rRNA methyltransferase YfiF 2488 49.76 0 2872638..2873057 + 139 117624804 trxC APECO1_3950 - thioredoxin 2 2489 51.45 0 2873102..2873824 + 240 117624805 yfiP APECO1_3949 - hypothetical protein 2490 54.11 0 2873856..2876516 + 886 117624806 yfiQ APECO1_3948 - acyl-CoA synthetase (NDP forming) 2491 49.01 0 2876627..2877985 + 452 117624807 pssA APECO1_3947 - phosphatidylserine synthase 2492 56.04 +1 2878082..2878354 + 90 117624808 yfiM APECO1_3946 - hypothetical protein 2493 47.56 0 2878351..2879742 - 463 117624809 kgtP APECO1_3945 - alpha-ketoglutarate transporter 2494 48.21 0 2879972..2880307 - 111 117624810 - APECO1_3944 - ISEc12 putative ATP-binding protein 2495 48.12 0 2880735..2882276 - 513 117624811 - APECO1_3943 - transposase for ISEc12 2496 55.56 0 2882841..2883272 + 143 117624812 - APECO1_3942 - hypothetical protein 2497 49.10 0 2883791..2884513 - 240 117624813 - APECO1_3941 - putative transposase subunit 2498 48.46 0 2884618..2884941 - 107 117624814 - APECO1_3940 - putative transposase subunit 2499 51.31 0 2890825..2893410 - 861 117624816 clpB APECO1_3938 - protein disaggregation chaperone 2500 54.10 0 2893528..2894259 - 243 117624817 yfiH APECO1_3937 - hypothetical protein 2501 52.70 0 2894256..2895236 - 326 117624818 rluD APECO1_3936 - 23S rRNA pseudouridine synthase D 2502 50.54 0 2895371..2896108 + 245 117624819 yfiO APECO1_3935 - outer membrane protein assembly complex subunit YfiO 2503 48.84 0 2896969..2898129 + 386 117624820 pheA APECO1_3934 - bifunctional chorismate mutase/prephenate dehydratase 2504 52.32 0 2898172..2899293 - 373 117624821 tyrA APECO1_3933 - bifunctional chorismate mutase/prephenate dehydrogenase 2505 51.40 0 2899304..2900443 - 379 117624822 aroF APECO1_3932 - phospho-2-dehydro-3-deoxyheptonate aldolase 2506 45.36 -1 2900584..2900949 + 121 117624823 yfiL APECO1_3931 - hypothetical protein 2507 43.93 -1 2901098..2901616 + 172 117624824 yfiR APECO1_3930 - hypothetical protein 2508 48.00 0 2901606..2902832 + 408 117624825 yfiN APECO1_3929 - hypothetical protein 2509 51.14 0 2902848..2903330 + 160 117624826 yfiB APECO1_3928 - putative outer membrane lipoprotein 2510 48.28 0 2903407..2903754 - 115 117624827 rplS APECO1_3927 - 50S ribosomal protein L19 2511 52.55 0 2903796..2904128 - 110 117624828 trmD APECO1_39262 - tRNA (guanine-1-)-methyltransferase 2512 54.17 0 2904206..2904565 - 119 117624829 trmD APECO1_3926 - tRNA (guanine-1-)-methyltransferase 2513 48.73 0 2904596..2905147 - 183 117624830 rimM APECO1_3925 - 16S rRNA-processing protein 2514 51.13 0 2905163..2905471 - 102 117624831 rpsP APECO1_3924 - 30S ribosomal protein S16 2515 54.26 0 2905548..2906909 - 453 117624832 ffh APECO1_3923 - signal recognition particle protein 2516 51.56 0 2907001..2907867 + 288 117624833 ypjD APECO1_3922 - hypothetical protein 2517 51.29 0 2907933..2909174 + 413 117624834 - APECO1_3921 - hypothetical protein 2518 48.61 0 2909196..2909948 + 250 117624835 - APECO1_3920 - hypothetical protein 2519 50.28 0 2909945..2910823 + 292 117624836 ppnK APECO1_3919 - inorganic polyphosphate/ATP-NAD kinase 2520 51.99 0 2910909..2912570 + 553 117624837 recN APECO1_3918 - recombination and repair protein 2521 49.71 0 2912719..2913060 + 113 117624838 smpA APECO1_3917 - hypothetical protein 2522 46.33 0 2913402..2913878 - 158 117624839 yfjG APECO1_3916 - hypothetical protein 2523 51.55 0 2914010..2914492 + 160 117624840 smpB APECO1_3915 - SsrA-binding protein 2524 48.63 0 2915071..2915325 - 84 117624841 - APECO1_3914 - hypothetical protein 2525 43.22 -1 2915649..2916437 + 262 117624842 - APECO1_3913 - hypothetical protein 2526 42.18 -1 2916525..2916818 - 97 117624843 - APECO1_39122 - hypothetical protein 2527 45.35 -1 2917029..2917802 - 257 117624844 - APECO1_3912 - hypothetical protein 2528 40.94 -2 2918794..2920608 + 604 117624845 - APECO1_3911 - hypothetical protein 2529 48.69 0 2920995..2921489 + 164 117624846 - APECO1_3910 - putative tail fiber protein 2530 47.93 0 2921489..2922091 + 200 117624847 - APECO1_3909 - putative tail fiber assembly protein 2531 45.05 -1 2922063..2922506 - 147 117624848 - APECO1_3908 - hypothetical protein 2532 58.12 +1 2923256..2923840 - 194 117624849 - APECO1_3907 - hypothetical protein 2533 57.70 +1 2923831..2924889 - 352 117624850 - APECO1_3906 - bacteriophage V tail protein 2534 57.58 +1 2924876..2925304 - 142 117624851 - APECO1_3905 - bacteriophage V tail protein 2535 57.19 +1 2925301..2925849 - 182 117624852 - APECO1_3904 - bacteriophage V tail protein 2536 58.70 +1 2925849..2926928 - 359 117624853 - APECO1_3903 - putative tail protein 2537 55.94 +1 2926925..2928295 - 456 117624854 - APECO1_3902 - bacteriophage V tail/DNA circulation protein 2538 52.18 0 2928314..2930149 - 611 117624855 - APECO1_3901 - bacteriophage V tail protein 2539 52.72 0 2930148..2930441 + 97 117624856 - APECO1_3900 - hypothetical protein 2540 53.50 0 2930560..2930916 - 118 117624857 - APECO1_3899 - hypothetical protein 2541 57.45 +1 2930916..2932412 - 498 117624858 - APECO1_3898 - bacteriophage V tail sheath pro 2542 54.90 0 2932575..2933135 - 186 117624859 - APECO1_3897 - hypothetical protein 2543 56.61 +1 2933132..2933638 - 168 117624860 - APECO1_3896 - hypothetical protein 2544 57.66 +1 2933613..2934023 - 136 117624861 - APECO1_3895 - bacteriophage head tail adaptor 2545 53.70 0 2934020..2934343 - 107 117624862 - APECO1_3894 - hypothetical protein 2546 54.31 0 2934596..2935801 - 401 117624863 - APECO1_3893 - major capsid protein precursor 2547 54.15 0 2935816..2936502 - 228 117624864 - APECO1_3892 - pro-head protease 2548 56.09 +1 2936444..2937559 - 371 117624865 - APECO1_3891 - phage portal protein 2549 54.44 0 2937879..2939612 - 577 117624866 - APECO1_3890 - bacteriophage V large terminase subunit 2550 58.59 +1 2939609..2940103 - 164 117624867 - APECO1_3889 - bacteriophage V small terminase subunit 2551 58.40 +1 2940229..2940579 - 116 117624868 - APECO1_3888 - putative phage endonuclease 2552 48.40 0 2941550..2941987 - 145 117624869 - APECO1_3887 - putative phage lysis protein 2553 49.06 0 2941984..2942460 - 158 117624870 - APECO1_3886 - putative muramidase 2554 44.69 -1 2942447..2942851 - 134 117624871 - APECO1_3885 - hypothetical protein 2555 33.04 -2 2942904..2943239 - 111 117624872 - APECO1_3884 - hypothetical protein 2556 47.14 0 2943425..2944177 - 250 117624873 - APECO1_3883 - Qin-like prophage; antitermination protein Q 2557 55.24 0 2944191..2945144 - 317 117624874 - APECO1_3882 - hypothetical protein 2558 50.63 0 2945188..2945985 - 265 117624875 - APECO1_3881 - hypothetical protein 2559 56.67 +1 2946005..2946394 - 129 117624876 - APECO1_3880 - bacteriophage V crossover junction endodeoxyribonuclease 2560 55.05 0 2946391..2946717 - 108 117624877 - APECO1_3879 - hypothetical protein 2561 53.98 0 2946714..2947367 - 217 117624878 - APECO1_3878 - DNA adenine methylase 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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