version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2434 50.35 0 2812172..2813176 + 334 117624750 sseA APECO1_4003 - 3-mercaptopyruvate sulfurtransferase 2435 47.07 0 2813669..2814454 - 261 117624751 sseB APECO1_4002 - enhanced serine sensitivity protein SseB 2436 56.31 +1 2814587..2815870 - 427 117624752 pepB APECO1_4001 - aminopeptidase B 2437 52.38 0 2816141..2816476 - 111 117624753 fdx APECO1_4000 - [2Fe-2S] ferredoxin 2438 57.38 +1 2816478..2818382 - 634 117624754 hscA APECO1_3999 - chaperone protein HscA 2439 51.74 0 2818345..2818860 - 171 117624755 hscB APECO1_3998 - co-chaperone HscB 2440 51.23 0 2818956..2819279 - 107 117624756 iscA APECO1_3997 - iron-sulfur cluster assembly protein 2441 49.35 0 2819296..2819682 - 128 117624757 iscU APECO1_3996 - scaffold protein 2442 52.54 0 2819710..2820948 - 412 117624758 iscS APECO1_3995 - cysteine desulfurase 2443 53.37 0 2821036..2821524 - 162 117624759 iscR APECO1_3994 - DNA-binding transcriptional regulator IscR 2444 54.79 0 2821794..2822534 - 246 117624760 yfhQ APECO1_3993 - putative methyltransferase 2445 54.23 0 2822653..2823456 + 267 117624761 suhB APECO1_3992 - inositol monophosphatase 2446 50.00 0 2823574..2824455 + 293 117624762 yfhR APECO1_3991 - putative peptidase 2447 51.84 0 2824625..2825926 + 433 117624763 csiE APECO1_3990 - stationary phase inducible protein CsiE 2448 56.75 +1 2825918..2827057 - 379 117624764 hcaT APECO1_3989 - putative 3-phenylpropionic acid transporter 2449 48.93 0 2827381..2827848 + 155 117624765 yphA APECO1_3988 - hypothetical protein 2450 54.30 0 2828008..2828880 - 290 117624766 yphB APECO1_3987 - hypothetical protein 2451 54.06 0 2828892..2829986 - 364 117624767 yphC APECO1_3986 - putative oxidoreductase, Zn-dependent and NAD(P)-binding 2452 55.26 0 2830019..2831017 - 332 117624768 yphD APECO1_3985 - ABC-type sugar transport system permease component YphD 2453 55.82 +1 2831042..2832553 - 503 117624769 yphE APECO1_3984 - ABC-type sugar transport system, ATP-binding component YphE 2454 45.63 -1 2832576..2833559 - 327 117624770 yphF APECO1_3983 - ABC-type sugar transport system, periplasmic component YphF 2455 54.84 0 2833656..2836937 - 1093 117624771 yphG APECO1_3982 - hypothetical protein 2456 51.42 0 2837055..2838248 + 397 117624772 ychA APECO1_3981 - putative transcriptional regulator YchA 2457 52.70 0 2838312..2839571 - 419 117624773 glyA APECO1_3980 - serine hydroxymethyltransferase 2458 52.23 0 2839894..2841084 + 396 117624774 hmpA APECO1_3979 - nitric oxide dioxygenase 2459 50.44 0 2841129..2841467 - 112 117624775 glnB APECO1_3978 - nitrogen regulatory protein P-II 1 2460 54.95 0 2841528..2842901 - 457 117624776 yfhA APECO1_3977 - putative DNA-binding response regulator in two-component system 2461 54.58 0 2842852..2843571 - 239 117624777 yfhG APECO1_3976 - hypothetical protein 2462 53.07 0 2843730..2845112 - 460 117624778 yfhK APECO1_3975 - putative sensor-like histidine kinase YfhK 2463 56.66 +1 2845733..2849620 - 1295 117624779 purL APECO1_3974 - phosphoribosylformylglycinamidine synthase 2464 50.46 0 2850019..2851437 + 472 117624780 yfhD APECO1_3973 - putative transglycosylase 2465 52.89 0 2851434..2851970 - 178 117624781 tadA APECO1_3972 - tRNA-specific adenosine deaminase 2466 50.81 0 2852767..2853687 + 306 117624782 yfhH APECO1_3970 - putative DNA-binding transcriptional regulator 2467 44.83 -1 2853743..2854003 + 86 117624783 yfhL APECO1_3969 - putative 4Fe-4S cluster-containing protein 2468 49.87 0 2854698..2855078 - 126 117624784 acpS APECO1_3968 - 4'-phosphopantetheinyl transferase 2469 55.42 0 2855078..2855824 - 248 117624785 pdxJ APECO1_3967 - pyridoxal phosphate biosynthetic protein PdxJ 2470 54.18 0 2855821..2856549 - 242 117624786 recO APECO1_3966 - DNA repair protein RecO 2471 51.99 0 2856561..2857466 - 301 117624787 era APECO1_3965 - GTP-binding protein Era 2472 51.25 0 2857463..2858143 - 226 117624788 rnc APECO1_3964 - ribonuclease III 2473 52.00 0 2858410..2859384 - 324 117624789 lepB APECO1_3963 - lsignal peptidase I 2474 53.28 0 2859400..2861199 - 599 117624790 lepA APECO1_3962 - GTP-binding protein LepA 2475 55.21 0 2861397..2861876 - 159 117624791 rseC APECO1_3961 - SoxR reducing system protein RseC 2476 51.31 0 2861873..2862829 - 318 117624792 rseB APECO1_3960 - periplasmic negative regulator of sigmaE 2477 51.77 0 2862829..2863479 - 216 117624793 rseA APECO1_3959 - anti-RNA polymerase sigma factor SigE 2478 48.77 0 2863512..2864120 - 202 117624794 rpoE APECO1_3958 - RNA polymerase sigma factor RpoE 2479 53.11 0 2864495..2866117 + 540 117624795 nadB APECO1_3957 - L-aspartate oxidase 2480 51.28 0 2866102..2866959 - 285 117624796 yfiC APECO1_3956 - hypothetical protein 2481 54.46 0 2866971..2868305 + 444 117624797 srmB APECO1_39552 - ATP-dependent RNA helicase SrmB 2482 48.33 0 2868338..2869264 - 308 117624798 yfiE APECO1_3955 - putative transcriptional regulator YfiE 2483 50.85 0 2869322..2869909 + 195 117624799 yfiK APECO1_3954 - neutral amino-acid efflux protein 2484 47.92 0 2869965..2870348 - 127 117624800 yfiD APECO1_3953 - autonomous glycyl radical cofactor GrcA 2485 52.03 0 2870653..2871342 + 229 117624801 ung APECO1_3952 - uracil-DNA glycosylase 2486 55.65 0 2871390..2871761 - 123 117624802 yfiF APECO1_39512 - tRNA/rRNA methyltransferase YfiF 2487 55.39 0 2871967..2872569 + 200 117624803 yfiF APECO1_3951 - tRNA/rRNA methyltransferase YfiF 2488 49.76 0 2872638..2873057 + 139 117624804 trxC APECO1_3950 - thioredoxin 2 2489 51.45 0 2873102..2873824 + 240 117624805 yfiP APECO1_3949 - hypothetical protein 2490 54.11 0 2873856..2876516 + 886 117624806 yfiQ APECO1_3948 - acyl-CoA synthetase (NDP forming) 2491 49.01 0 2876627..2877985 + 452 117624807 pssA APECO1_3947 - phosphatidylserine synthase 2492 56.04 +1 2878082..2878354 + 90 117624808 yfiM APECO1_3946 - hypothetical protein 2493 47.56 0 2878351..2879742 - 463 117624809 kgtP APECO1_3945 - alpha-ketoglutarate transporter 2494 48.21 0 2879972..2880307 - 111 117624810 - APECO1_3944 - ISEc12 putative ATP-binding protein 2495 48.12 0 2880735..2882276 - 513 117624811 - APECO1_3943 - transposase for ISEc12 2496 55.56 0 2882841..2883272 + 143 117624812 - APECO1_3942 - hypothetical protein 2497 49.10 0 2883791..2884513 - 240 117624813 - APECO1_3941 - putative transposase subunit 2498 48.46 0 2884618..2884941 - 107 117624814 - APECO1_3940 - putative transposase subunit 2499 51.31 0 2890825..2893410 - 861 117624816 clpB APECO1_3938 - protein disaggregation chaperone 2500 54.10 0 2893528..2894259 - 243 117624817 yfiH APECO1_3937 - hypothetical protein 2501 52.70 0 2894256..2895236 - 326 117624818 rluD APECO1_3936 - 23S rRNA pseudouridine synthase D 2502 50.54 0 2895371..2896108 + 245 117624819 yfiO APECO1_3935 - outer membrane protein assembly complex subunit YfiO 2503 48.84 0 2896969..2898129 + 386 117624820 pheA APECO1_3934 - bifunctional chorismate mutase/prephenate dehydratase 2504 52.32 0 2898172..2899293 - 373 117624821 tyrA APECO1_3933 - bifunctional chorismate mutase/prephenate dehydrogenase 2505 51.40 0 2899304..2900443 - 379 117624822 aroF APECO1_3932 - phospho-2-dehydro-3-deoxyheptonate aldolase 2506 45.36 -1 2900584..2900949 + 121 117624823 yfiL APECO1_3931 - hypothetical protein 2507 43.93 -1 2901098..2901616 + 172 117624824 yfiR APECO1_3930 - hypothetical protein 2508 48.00 0 2901606..2902832 + 408 117624825 yfiN APECO1_3929 - hypothetical protein 2509 51.14 0 2902848..2903330 + 160 117624826 yfiB APECO1_3928 - putative outer membrane lipoprotein 2510 48.28 0 2903407..2903754 - 115 117624827 rplS APECO1_3927 - 50S ribosomal protein L19 2511 52.55 0 2903796..2904128 - 110 117624828 trmD APECO1_39262 - tRNA (guanine-1-)-methyltransferase 2512 54.17 0 2904206..2904565 - 119 117624829 trmD APECO1_3926 - tRNA (guanine-1-)-methyltransferase 2513 48.73 0 2904596..2905147 - 183 117624830 rimM APECO1_3925 - 16S rRNA-processing protein 2514 51.13 0 2905163..2905471 - 102 117624831 rpsP APECO1_3924 - 30S ribosomal protein S16 2515 54.26 0 2905548..2906909 - 453 117624832 ffh APECO1_3923 - signal recognition particle protein 2516 51.56 0 2907001..2907867 + 288 117624833 ypjD APECO1_3922 - hypothetical protein 2517 51.29 0 2907933..2909174 + 413 117624834 - APECO1_3921 - hypothetical protein 2518 48.61 0 2909196..2909948 + 250 117624835 - APECO1_3920 - hypothetical protein 2519 50.28 0 2909945..2910823 + 292 117624836 ppnK APECO1_3919 - inorganic polyphosphate/ATP-NAD kinase 2520 51.99 0 2910909..2912570 + 553 117624837 recN APECO1_3918 - recombination and repair protein 2521 49.71 0 2912719..2913060 + 113 117624838 smpA APECO1_3917 - hypothetical protein 2522 46.33 0 2913402..2913878 - 158 117624839 yfjG APECO1_3916 - hypothetical protein 2523 51.55 0 2914010..2914492 + 160 117624840 smpB APECO1_3915 - SsrA-binding protein 2524 48.63 0 2915071..2915325 - 84 117624841 - APECO1_3914 - hypothetical protein 2525 43.22 -1 2915649..2916437 + 262 117624842 - APECO1_3913 - hypothetical protein 2526 42.18 -1 2916525..2916818 - 97 117624843 - APECO1_39122 - hypothetical protein 2527 45.35 -1 2917029..2917802 - 257 117624844 - APECO1_3912 - hypothetical protein 2528 40.94 -2 2918794..2920608 + 604 117624845 - APECO1_3911 - hypothetical protein 2529 48.69 0 2920995..2921489 + 164 117624846 - APECO1_3910 - putative tail fiber protein 2530 47.93 0 2921489..2922091 + 200 117624847 - APECO1_3909 - putative tail fiber assembly protein 2531 45.05 -1 2922063..2922506 - 147 117624848 - APECO1_3908 - hypothetical protein 2532 58.12 +1 2923256..2923840 - 194 117624849 - APECO1_3907 - hypothetical protein 2533 57.70 +1 2923831..2924889 - 352 117624850 - APECO1_3906 - bacteriophage V tail protein 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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